Wall clock time and date at job start Sat Apr 11 2020 06:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.69781 * 2 1 4 4 C 1.53190 * 109.58861 * 239.64538 * 2 1 3 5 5 H 1.08996 * 109.49897 * 305.52943 * 4 2 1 6 6 C 1.53008 * 109.49788 * 65.58890 * 4 2 1 7 7 O 1.42896 * 109.47275 * 185.00089 * 6 4 2 8 8 C 1.53039 * 109.31730 * 185.57387 * 4 2 1 9 9 C 1.53044 * 109.53249 * 61.36254 * 8 4 2 10 10 C 1.53619 * 109.24330 * 298.51185 * 9 8 4 11 11 N 1.46925 * 109.58794 * 120.35298 * 2 1 3 12 12 C 1.34768 * 120.63014 * 353.37339 * 11 2 1 13 13 O 1.21352 * 120.00462 * 7.23469 * 12 11 2 14 14 C 1.49454 * 119.99737 * 187.22749 * 12 11 2 15 15 O 1.21348 * 120.00168 * 6.73466 * 14 12 11 16 16 N 1.34778 * 119.99968 * 186.72956 * 14 12 11 17 17 C 1.47026 * 125.64969 * 359.97438 * 16 14 12 18 18 C 1.54327 * 107.27435 * 178.98528 * 17 16 14 19 19 C 1.55154 * 102.93785 * 337.81064 * 18 17 16 20 20 O 1.42902 * 111.00599 * 277.38494 * 19 18 17 21 21 C 1.50701 * 111.00163 * 153.57809 * 19 18 17 22 22 H 1.08000 * 120.00347 * 4.76451 * 21 19 18 23 23 C 1.37882 * 120.00243 * 184.77112 * 21 19 18 24 24 N 1.31519 * 119.99733 * 4.89854 * 23 21 19 25 25 Si 1.86799 * 120.00232 * 184.89935 * 23 21 19 26 26 H 1.48504 * 109.46967 * 269.99520 * 25 23 21 27 27 H 1.48499 * 109.47052 * 29.99607 * 25 23 21 28 28 H 1.48503 * 109.46884 * 149.99844 * 25 23 21 29 29 C 1.47420 * 125.65137 * 180.02562 * 16 14 12 30 30 H 1.09000 * 109.46879 * 304.35016 * 1 2 3 31 31 H 1.08999 * 109.47145 * 64.35107 * 1 2 3 32 32 H 1.09004 * 109.46739 * 184.35303 * 1 2 3 33 33 H 1.09002 * 109.47171 * 305.00366 * 6 4 2 34 34 H 1.09001 * 109.46889 * 64.99853 * 6 4 2 35 35 H 0.96690 * 114.00261 * 180.02562 * 7 6 4 36 36 H 1.08991 * 109.46049 * 181.38594 * 8 4 2 37 37 H 1.09000 * 109.45925 * 301.34891 * 8 4 2 38 38 H 1.08996 * 109.49635 * 58.59183 * 9 8 4 39 39 H 1.09005 * 109.48944 * 178.68619 * 9 8 4 40 40 H 1.08999 * 109.74409 * 295.11998 * 10 9 8 41 41 H 1.08999 * 109.66436 * 174.55257 * 10 9 8 42 42 H 1.09008 * 109.87819 * 59.56844 * 17 16 14 43 43 H 1.09005 * 109.88214 * 298.40640 * 17 16 14 44 44 H 1.09000 * 110.71843 * 219.44493 * 18 17 16 45 45 H 1.09003 * 110.71589 * 96.16913 * 18 17 16 46 46 H 0.96701 * 114.00378 * 171.81338 * 20 19 18 47 47 H 0.97001 * 119.99756 * 354.90905 * 24 23 21 48 48 H 1.08996 * 110.36974 * 85.24193 * 29 16 14 49 49 H 1.09003 * 110.36620 * 322.91863 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2454 5 1 1.6031 -1.7252 -1.2914 6 6 1.6532 0.0599 -2.4968 7 8 2.0295 -0.6774 -3.6616 8 6 3.5676 -0.8479 -1.1702 9 6 3.9570 -1.6656 0.0635 10 6 3.4657 -0.9418 1.3263 11 7 2.0226 -0.6995 1.1945 12 6 1.1676 -1.1060 2.1536 13 8 -0.0297 -1.0146 1.9777 14 6 1.6938 -1.6698 3.4338 15 8 2.8857 -1.6494 3.6612 16 7 0.8447 -2.2007 4.3358 17 6 -0.6155 -2.2892 4.1894 18 6 -1.1609 -2.9909 5.4511 19 6 0.0754 -3.7652 5.9797 20 8 0.2335 -5.0082 5.2927 21 6 -0.0191 -3.9823 7.4680 22 1 -0.9078 -3.6807 8.0024 23 6 1.0291 -4.5660 8.1475 24 7 2.1482 -4.8451 7.5157 25 14 0.8596 -4.9603 9.9656 26 1 1.3127 -3.7963 10.7688 27 1 -0.5622 -5.2540 10.2779 28 1 1.6936 -6.1439 10.2952 29 6 1.2262 -2.7880 5.6330 30 1 -0.3633 0.5799 0.8485 31 1 -0.3633 0.4448 -0.9264 32 1 -0.3633 -1.0248 0.0780 33 1 0.5755 0.2226 -2.5022 34 1 2.1659 1.0218 -2.4942 35 1 1.8122 -0.2358 -4.4938 36 1 3.9378 -1.3447 -2.0669 37 1 4.0061 0.1475 -1.0994 38 1 3.4984 -2.6527 0.0052 39 1 5.0413 -1.7694 0.1036 40 1 3.9878 0.0091 1.4323 41 1 3.6533 -1.5635 2.2018 42 1 -0.8645 -2.8735 3.3034 43 1 -1.0413 -1.2890 4.1082 44 1 -1.9654 -3.6792 5.1923 45 1 -1.4993 -2.2583 6.1839 46 1 1.0584 -5.4691 5.4981 47 1 2.2109 -4.7091 6.5573 48 1 1.3054 -2.0106 6.3928 49 1 2.1684 -3.3286 5.5424 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326545590.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:54 Heat of formation + Delta-G solvation = -158.193856 kcal Electronic energy + Delta-G solvation = -31809.165336 eV Core-core repulsion = 27543.510183 eV Total energy + Delta-G solvation = -4265.655154 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.39258 -40.83088 -39.37567 -39.03588 -37.44016 -36.44409 -34.34974 -34.17366 -33.83751 -32.13698 -29.78831 -29.26834 -27.56207 -26.89011 -26.01240 -24.51584 -23.21191 -22.62075 -21.76078 -21.31605 -20.42570 -19.76852 -18.46121 -18.31644 -17.81174 -17.49142 -17.03833 -16.89373 -16.33751 -16.15297 -15.99982 -15.69509 -15.53906 -15.35492 -14.99190 -14.84392 -14.78029 -14.40301 -14.26413 -14.03389 -13.77816 -13.67926 -13.48337 -13.30661 -13.13495 -12.89282 -12.72006 -12.62501 -12.41669 -12.31393 -12.20736 -12.12454 -11.92328 -11.81226 -11.62548 -11.39871 -11.16549 -10.79256 -10.68711 -10.32869 -10.03121 -9.80292 -9.69148 -8.66975 -6.52692 0.24107 1.10068 1.56227 1.62996 1.81500 2.00034 2.22194 2.52592 2.95935 3.03133 3.25480 3.54006 3.60013 3.71410 3.82511 3.86389 3.93805 4.08246 4.13365 4.17595 4.20127 4.34561 4.36581 4.44357 4.45826 4.53260 4.66417 4.69410 4.72590 4.74528 4.85270 4.86073 4.97810 4.99739 5.05228 5.07605 5.08849 5.20851 5.21504 5.26587 5.34464 5.53996 5.77350 5.94436 6.06712 6.18399 6.43363 6.54338 6.83419 6.88107 6.93503 7.27374 8.63022 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024900 B = 0.002748 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.224697 B =10185.426496 C =10736.892774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.146 3.854 3 H 0.100 0.900 4 C -0.097 4.097 5 H 0.057 0.943 6 C 0.086 3.914 7 O -0.592 6.592 8 C -0.105 4.105 9 C -0.130 4.130 10 C 0.062 3.938 11 N -0.574 5.574 12 C 0.514 3.486 13 O -0.517 6.517 14 C 0.499 3.501 15 O -0.544 6.544 16 N -0.581 5.581 17 C 0.120 3.880 18 C -0.108 4.108 19 C 0.213 3.787 20 O -0.585 6.585 21 C -0.623 4.623 22 H 0.063 0.937 23 C -0.015 4.015 24 N -0.925 5.925 25 Si 1.120 2.880 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.285 1.285 29 C 0.095 3.905 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.399 0.601 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.119 0.881 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.364 0.636 47 H 0.260 0.740 48 H 0.062 0.938 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.279 12.722 -19.092 22.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.045 3.955 3 H 0.118 0.882 4 C -0.117 4.117 5 H 0.075 0.925 6 C 0.008 3.992 7 O -0.400 6.400 8 C -0.143 4.143 9 C -0.169 4.169 10 C -0.059 4.059 11 N -0.307 5.307 12 C 0.296 3.704 13 O -0.394 6.394 14 C 0.284 3.716 15 O -0.425 6.425 16 N -0.312 5.312 17 C -0.001 4.001 18 C -0.146 4.146 19 C 0.173 3.827 20 O -0.392 6.392 21 C -0.661 4.661 22 H 0.082 0.918 23 C -0.215 4.215 24 N -0.565 5.565 25 Si 0.941 3.059 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.210 1.210 29 C -0.028 4.028 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.249 0.751 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.136 0.864 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.212 0.788 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.164 12.009 -17.665 21.361 hybrid contribution -0.172 0.459 -1.272 1.363 sum -0.009 12.468 -18.937 22.673 Atomic orbital electron populations 1.22215 0.92437 1.02903 1.01748 1.21522 0.95910 0.95760 0.82345 0.88178 1.21509 0.97285 0.99642 0.93231 0.92461 1.22149 0.99299 0.93772 0.83987 1.86421 1.85787 1.50569 1.17255 1.21506 0.94060 1.01143 0.97575 1.21994 1.02211 0.98539 0.94108 1.23043 0.77859 1.03139 1.01817 1.48013 1.08447 1.55366 1.18839 1.19722 0.86550 0.79779 0.84342 1.90789 1.15132 1.54402 1.79074 1.20542 0.85771 0.79692 0.85594 1.90439 1.15528 1.58990 1.77547 1.48663 1.09333 1.55170 1.18062 1.22173 0.77871 1.01565 0.98537 1.22651 0.97303 0.98576 0.96072 1.20151 0.90975 0.80648 0.90930 1.86293 1.44720 1.36849 1.71298 1.22611 1.05922 1.44802 0.92810 0.91832 1.27294 0.91394 0.92122 1.10684 1.71058 1.26766 1.47659 1.11036 0.82877 0.76370 0.77112 0.69507 1.19932 1.19565 1.21049 1.23315 1.00262 0.96886 0.82333 0.92315 0.90575 0.92868 0.92112 0.91385 0.75130 0.90927 0.90153 0.93438 0.88828 0.89643 0.86412 0.91262 0.89250 0.89594 0.88901 0.78765 0.92611 0.91989 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 7.45 71.98 0.54 -2.35 16 2 C 0.15 2.93 2.95 44.97 0.13 3.06 16 3 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.10 -1.76 2.04 -10.71 -0.02 -1.79 16 5 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 6 C 0.09 1.08 6.31 71.98 0.45 1.53 16 7 O -0.59 -8.31 13.18 -148.98 -1.96 -10.28 16 8 C -0.11 -1.80 5.08 30.62 0.16 -1.64 16 9 C -0.13 -2.70 6.10 30.82 0.19 -2.52 16 10 C 0.06 1.56 6.05 86.51 0.52 2.09 16 11 N -0.57 -15.33 2.97 -795.77 -2.36 -17.70 16 12 C 0.51 17.08 7.61 87.27 0.66 17.75 16 13 O -0.52 -17.35 9.59 -3.25 -0.03 -17.38 16 14 C 0.50 19.75 7.78 87.27 0.68 20.43 16 15 O -0.54 -23.01 13.39 -3.24 -0.04 -23.06 16 16 N -0.58 -24.20 3.33 -813.35 -2.71 -26.91 16 17 C 0.12 4.47 5.49 86.73 0.48 4.95 16 18 C -0.11 -4.32 6.13 31.78 0.19 -4.12 16 19 C 0.21 10.31 0.83 -10.15 -0.01 10.30 16 20 O -0.58 -29.71 13.15 -148.98 -1.96 -31.67 16 21 C -0.62 -32.66 8.26 25.60 0.21 -32.45 16 22 H 0.06 3.25 7.79 -2.91 -0.02 3.23 16 23 C -0.01 -0.79 5.30 84.66 0.45 -0.34 16 24 N -0.92 -52.15 13.06 21.45 0.28 -51.87 16 25 Si 1.12 47.37 29.91 68.60 2.05 49.42 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 27 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 28 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 29 C 0.09 4.52 5.32 86.85 0.46 4.98 16 30 H 0.06 1.43 6.86 -2.39 -0.02 1.41 16 31 H 0.08 1.15 6.33 -2.39 -0.02 1.13 16 32 H 0.05 1.42 6.64 -2.39 -0.02 1.40 16 33 H 0.06 0.66 6.31 -2.39 -0.02 0.64 16 34 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.40 1.80 9.12 -74.06 -0.68 1.13 16 36 H 0.07 1.29 7.79 -2.39 -0.02 1.27 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.12 3.79 4.21 -56.28 -0.24 3.55 16 42 H 0.07 2.58 7.74 -2.38 -0.02 2.56 16 43 H 0.09 2.99 7.56 -2.38 -0.02 2.97 16 44 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 45 H 0.09 3.45 8.03 -2.39 -0.02 3.43 16 46 H 0.36 18.81 6.78 -74.06 -0.50 18.30 16 47 H 0.26 14.63 3.63 -92.71 -0.34 14.29 16 48 H 0.06 3.07 8.03 -2.39 -0.02 3.05 16 49 H 0.05 2.79 6.21 -2.39 -0.01 2.78 16 Total: -1.00 -66.11 370.76 -1.61 -67.72 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: 0.02 Total: 41.84 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: 5.10 Total: 19.87 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -4.79 Total: -96.47 kcal Atomic # 8 Polarization: -78.38 SS G_CDS: -4.00 Total: -82.38 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.05 Total: 49.42 kcal Total: -66.11 -1.61 -67.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326545590.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.475 kcal (2) G-P(sol) polarization free energy of solvation -66.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds