Wall clock time and date at job start Sat Apr 11 2020 06:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.50922 * 2 1 4 4 C 1.53292 * 109.51106 * 239.89985 * 2 1 3 5 5 N 1.47144 * 108.38601 * 187.77068 * 4 2 1 6 6 C 1.34778 * 120.98900 * 230.55408 * 5 4 2 7 7 O 1.21343 * 120.00367 * 172.05358 * 6 5 4 8 8 C 1.49450 * 119.99650 * 352.06152 * 6 5 4 9 9 O 1.21351 * 119.99903 * 353.22931 * 8 6 5 10 10 N 1.34778 * 120.00266 * 173.23078 * 8 6 5 11 11 C 1.47425 * 125.64487 * 0.02836 * 10 8 6 12 12 C 1.54910 * 104.82959 * 204.08839 * 11 10 8 13 13 C 1.55151 * 101.58262 * 322.98958 * 12 11 10 14 14 O 1.42900 * 110.71969 * 276.96293 * 13 12 11 15 15 C 1.50700 * 110.72307 * 153.86593 * 13 12 11 16 16 H 1.08005 * 119.99767 * 359.97438 * 15 13 12 17 17 C 1.37871 * 120.00090 * 179.97438 * 15 13 12 18 18 N 1.31514 * 120.00192 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 120.00037 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47113 * 90.00096 * 19 17 15 21 21 H 1.48501 * 109.47518 * 210.00201 * 19 17 15 22 22 H 1.48500 * 109.47099 * 330.00169 * 19 17 15 23 23 C 1.47018 * 125.65114 * 179.71253 * 10 8 6 24 24 C 1.47157 * 118.03490 * 50.53514 * 5 4 2 25 25 C 1.53291 * 108.38369 * 309.46531 * 24 5 4 26 26 C 1.53002 * 109.51275 * 172.22417 * 25 24 5 27 27 C 1.52997 * 109.51446 * 292.32602 * 25 24 5 28 28 O 1.42956 * 109.51136 * 120.10367 * 2 1 3 29 29 H 1.08997 * 109.47259 * 180.10007 * 1 2 3 30 30 H 1.09001 * 109.46653 * 300.10047 * 1 2 3 31 31 H 1.08997 * 109.47420 * 60.09714 * 1 2 3 32 32 H 1.09006 * 109.68380 * 68.04886 * 4 2 1 33 33 H 1.08998 * 109.68582 * 307.50147 * 4 2 1 34 34 H 1.09005 * 110.36403 * 322.92267 * 11 10 8 35 35 H 1.08996 * 110.36783 * 85.24790 * 11 10 8 36 36 H 1.09004 * 111.00264 * 81.06501 * 12 11 10 37 37 H 1.09001 * 111.00694 * 204.91209 * 12 11 10 38 38 H 0.96701 * 114.00239 * 180.02562 * 14 13 12 39 39 H 0.96998 * 120.00001 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.88608 * 298.40208 * 23 10 8 41 41 H 1.09006 * 109.88091 * 59.56224 * 23 10 8 42 42 H 1.08993 * 109.68633 * 189.73784 * 24 5 4 43 43 H 1.09002 * 109.67692 * 69.19000 * 24 5 4 44 44 H 1.08996 * 109.47442 * 180.10288 * 26 25 24 45 45 H 1.09000 * 109.47069 * 60.09852 * 26 25 24 46 46 H 1.09011 * 109.46979 * 300.10162 * 26 25 24 47 47 H 1.09002 * 109.46743 * 299.89609 * 27 25 24 48 48 H 1.08995 * 109.47237 * 59.89732 * 27 25 24 49 49 H 1.09002 * 109.47358 * 179.90082 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7246 -1.2501 5 7 3.5011 -0.8756 -1.1341 6 6 4.3193 -0.5024 -2.1379 7 8 5.5213 -0.4988 -1.9716 8 6 3.7461 -0.0929 -3.4560 9 8 2.5566 -0.2127 -3.6639 10 7 4.5504 0.4094 -4.4138 11 6 6.0065 0.6078 -4.2961 12 6 6.3393 1.7200 -5.3218 13 6 5.3738 1.3702 -6.4848 14 8 5.9341 0.3538 -7.3186 15 6 5.0452 2.5990 -7.2930 16 1 5.4723 3.5534 -7.0224 17 6 4.1995 2.5049 -8.3777 18 7 3.6798 1.3427 -8.7075 19 14 3.7916 4.0282 -9.3790 20 1 4.7799 4.1780 -10.4772 21 1 2.4293 3.8925 -9.9542 22 1 3.8414 5.2253 -8.5016 23 6 4.1220 0.8442 -5.7513 24 6 4.0406 -1.4458 0.1106 25 6 3.4313 -0.6860 1.2944 26 6 3.8213 -1.3788 2.6016 27 6 3.9540 0.7519 1.3024 28 8 2.0075 -0.6758 1.1657 29 1 -0.3633 -1.0276 0.0018 30 1 -0.3633 0.5154 0.8891 31 1 -0.3634 0.5123 -0.8908 32 1 1.8030 -0.1389 -2.1377 33 1 1.5757 -1.7072 -1.3217 34 1 6.2648 0.9319 -3.2879 35 1 6.5361 -0.3111 -4.5475 36 1 6.1185 2.7064 -4.9139 37 1 7.3786 1.6560 -5.6440 38 1 5.3697 0.0991 -8.0614 39 1 3.0845 1.2765 -9.4704 40 1 3.6970 0.0015 -6.2967 41 1 3.3838 1.6414 -5.6632 42 1 5.1251 -1.3377 0.1241 43 1 3.7756 -2.5011 0.1760 44 1 3.3862 -0.8392 3.4427 45 1 4.9070 -1.3879 2.6981 46 1 3.4485 -2.4032 2.5952 47 1 5.0397 0.7432 1.3988 48 1 3.6758 1.2448 0.3709 49 1 3.5190 1.2920 2.1433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327023736.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:46 Heat of formation + Delta-G solvation = -140.671948 kcal Electronic energy + Delta-G solvation = -31871.834293 eV Core-core repulsion = 27606.938946 eV Total energy + Delta-G solvation = -4264.895347 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.05985 -39.63975 -38.19926 -37.41693 -35.11330 -34.60043 -34.13226 -32.22644 -30.94445 -30.23781 -28.12468 -27.73604 -27.45902 -26.64012 -25.44170 -23.36637 -22.16739 -21.72395 -19.88542 -19.59048 -19.03299 -17.30339 -17.10876 -16.94668 -16.69987 -16.10796 -15.76107 -15.37674 -15.10593 -14.75811 -14.60860 -14.51095 -14.27576 -13.71281 -13.37694 -13.16413 -13.05247 -12.93747 -12.71864 -12.60118 -12.47735 -12.29738 -12.21316 -12.11261 -12.05266 -11.79177 -11.64150 -11.57496 -11.27688 -11.12605 -10.96991 -10.85223 -10.65144 -10.54761 -10.51580 -10.21798 -10.10342 -9.39469 -8.99395 -8.72881 -8.62467 -8.38443 -8.09674 -6.35816 -4.44574 1.66610 2.41028 3.17221 3.25026 3.27530 3.37070 3.43472 3.63922 4.21332 4.32769 4.48972 4.56844 4.67301 4.75959 4.91642 4.92277 5.10879 5.18615 5.30754 5.34049 5.39841 5.43811 5.48438 5.55043 5.59686 5.65513 5.76078 5.78479 5.81641 5.84310 5.91724 5.94475 5.98915 6.05991 6.18868 6.27312 6.45039 6.70863 6.74547 6.77485 7.02928 7.06397 7.14022 7.26122 7.66872 7.70212 7.93566 7.95947 8.33026 8.59198 9.24758 9.38109 10.71964 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019101 B = 0.002966 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.547587 B = 9437.462673 C =10139.539143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.070 3.930 3 H 0.065 0.935 4 C 0.048 3.952 5 N -0.590 5.590 6 C 0.513 3.487 7 O -0.516 6.516 8 C 0.507 3.493 9 O -0.531 6.531 10 N -0.570 5.570 11 C 0.101 3.899 12 C -0.121 4.121 13 C 0.249 3.751 14 O -0.584 6.584 15 C -0.537 4.537 16 H 0.068 0.932 17 C 0.070 3.930 18 N -0.896 5.896 19 Si 0.906 3.094 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.097 3.903 24 C 0.087 3.913 25 C 0.101 3.899 26 C -0.135 4.135 27 C -0.175 4.175 28 O -0.371 6.371 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.148 0.852 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.386 0.614 39 H 0.272 0.728 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 -3.686 18.609 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.012 3.988 3 H 0.083 0.917 4 C -0.074 4.074 5 N -0.325 5.325 6 C 0.297 3.703 7 O -0.391 6.391 8 C 0.290 3.710 9 O -0.412 6.412 10 N -0.301 5.301 11 C -0.021 4.021 12 C -0.159 4.159 13 C 0.208 3.792 14 O -0.394 6.394 15 C -0.575 4.575 16 H 0.087 0.913 17 C -0.133 4.133 18 N -0.536 5.536 19 Si 0.733 3.267 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.024 4.024 24 C -0.036 4.036 25 C 0.061 3.939 26 C -0.193 4.193 27 C -0.233 4.233 28 O -0.291 6.291 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.165 0.835 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.238 0.762 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.121 0.879 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.005 -3.897 19.023 19.521 hybrid contribution -0.686 0.667 -1.155 1.500 sum -2.691 -3.229 17.868 18.356 Atomic orbital electron populations 1.21703 0.92087 1.03209 1.02854 1.22584 0.95588 0.95833 0.84835 0.91699 1.23512 0.78370 1.03653 1.01874 1.47903 1.07813 1.61518 1.15218 1.20362 0.86493 0.78188 0.85273 1.90697 1.14357 1.51903 1.82172 1.19562 0.86243 0.80368 0.84790 1.90476 1.14691 1.56195 1.79791 1.48729 1.09702 1.56926 1.14776 1.22614 0.79375 0.99677 1.00439 1.22838 1.00854 0.97077 0.95155 1.19493 0.86231 0.86496 0.86979 1.86098 1.50222 1.58850 1.44278 1.21531 1.28781 0.94569 1.12626 0.91348 1.25087 0.94471 0.96814 0.96927 1.69566 1.32053 1.23847 1.28118 0.86367 0.77747 0.82510 0.80100 1.20319 1.20963 1.19671 1.23312 1.00928 0.99483 0.78635 1.22405 1.00942 0.97462 0.82765 1.21829 0.81645 0.95371 0.95067 1.21715 1.01632 1.00972 0.94939 1.22368 1.02072 0.96155 1.02681 1.87971 1.20106 1.77292 1.43738 0.91605 0.91645 0.90426 0.83495 0.90687 0.89947 0.91116 0.90511 0.90195 0.76175 0.91820 0.91080 0.90851 0.87949 0.90452 0.91345 0.90750 0.91558 0.91181 0.92058 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.57 37.16 0.36 -0.95 16 2 C 0.07 0.79 3.01 -26.58 -0.08 0.71 16 3 H 0.07 0.76 6.26 -51.93 -0.33 0.43 16 4 C 0.05 0.63 5.42 -3.54 -0.02 0.61 16 5 N -0.59 -8.38 2.54 -172.79 -0.44 -8.82 16 6 C 0.51 8.74 7.70 -11.58 -0.09 8.65 16 7 O -0.52 -9.24 13.37 5.50 0.07 -9.16 16 8 C 0.51 9.88 7.77 -11.58 -0.09 9.79 16 9 O -0.53 -10.82 13.54 5.50 0.07 -10.75 16 10 N -0.57 -11.78 3.33 -171.02 -0.57 -12.34 16 11 C 0.10 1.93 5.95 -2.53 -0.02 1.91 16 12 C -0.12 -2.44 6.23 -24.58 -0.15 -2.59 16 13 C 0.25 5.91 0.86 -89.93 -0.08 5.83 16 14 O -0.58 -14.62 13.08 -35.23 -0.46 -15.08 16 15 C -0.54 -13.66 8.11 -34.44 -0.28 -13.94 16 16 H 0.07 1.71 7.76 -52.48 -0.41 1.30 16 17 C 0.07 1.78 5.28 -17.82 -0.09 1.68 16 18 N -0.90 -23.15 10.97 55.43 0.61 -22.55 16 19 Si 0.91 19.93 29.54 -169.99 -5.02 14.91 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 C 0.10 2.27 5.54 -3.06 -0.02 2.25 16 24 C 0.09 1.01 5.33 -3.53 -0.02 0.99 16 25 C 0.10 1.04 1.11 -90.47 -0.10 0.94 16 26 C -0.14 -1.04 8.85 37.16 0.33 -0.71 16 27 C -0.18 -1.79 8.09 37.16 0.30 -1.49 16 28 O -0.37 -4.31 9.87 -35.23 -0.35 -4.66 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.15 2.25 4.50 -53.91 -0.24 2.00 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.47 6.36 -51.93 -0.33 1.14 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.08 1.47 8.02 -51.93 -0.42 1.05 16 37 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.39 9.89 6.98 45.56 0.32 10.21 16 39 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 40 H 0.07 1.79 8.07 -51.93 -0.42 1.37 16 41 H 0.07 1.81 7.81 -51.93 -0.41 1.40 16 42 H 0.10 1.21 7.06 -51.93 -0.37 0.84 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.06 0.73 6.12 -51.93 -0.32 0.41 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 381.32 15.07 5.75 5.75 Total: -1.00 -27.87 381.32 -7.50 -35.37 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -7.12 Total: 13.65 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: -0.05 Total: 13.68 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -0.40 Total: -43.71 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.66 Total: -39.64 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -27.87 -7.50 -35.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327023736.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.303 kcal (2) G-P(sol) polarization free energy of solvation -27.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds