Wall clock time and date at job start Sat Apr 11 2020 06:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.50922 * 2 1 4 4 C 1.53292 * 109.51106 * 239.89985 * 2 1 3 5 5 N 1.47144 * 108.38601 * 187.77068 * 4 2 1 6 6 C 1.34778 * 120.98900 * 230.55408 * 5 4 2 7 7 O 1.21343 * 120.00367 * 172.05358 * 6 5 4 8 8 C 1.49450 * 119.99650 * 352.06152 * 6 5 4 9 9 O 1.21351 * 119.99903 * 353.22931 * 8 6 5 10 10 N 1.34778 * 120.00266 * 173.23078 * 8 6 5 11 11 C 1.47425 * 125.64487 * 0.02836 * 10 8 6 12 12 C 1.54910 * 104.82959 * 204.08839 * 11 10 8 13 13 C 1.55151 * 101.58262 * 322.98958 * 12 11 10 14 14 O 1.42900 * 110.71969 * 276.96293 * 13 12 11 15 15 C 1.50700 * 110.72307 * 153.86593 * 13 12 11 16 16 H 1.08005 * 119.99767 * 359.97438 * 15 13 12 17 17 C 1.37871 * 120.00090 * 179.97438 * 15 13 12 18 18 N 1.31514 * 120.00192 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 120.00037 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47113 * 90.00096 * 19 17 15 21 21 H 1.48501 * 109.47518 * 210.00201 * 19 17 15 22 22 H 1.48500 * 109.47099 * 330.00169 * 19 17 15 23 23 C 1.47018 * 125.65114 * 179.71253 * 10 8 6 24 24 C 1.47157 * 118.03490 * 50.53514 * 5 4 2 25 25 C 1.53291 * 108.38369 * 309.46531 * 24 5 4 26 26 C 1.53002 * 109.51275 * 172.22417 * 25 24 5 27 27 C 1.52997 * 109.51446 * 292.32602 * 25 24 5 28 28 O 1.42956 * 109.51136 * 120.10367 * 2 1 3 29 29 H 1.08997 * 109.47259 * 180.10007 * 1 2 3 30 30 H 1.09001 * 109.46653 * 300.10047 * 1 2 3 31 31 H 1.08997 * 109.47420 * 60.09714 * 1 2 3 32 32 H 1.09006 * 109.68380 * 68.04886 * 4 2 1 33 33 H 1.08998 * 109.68582 * 307.50147 * 4 2 1 34 34 H 1.09005 * 110.36403 * 322.92267 * 11 10 8 35 35 H 1.08996 * 110.36783 * 85.24790 * 11 10 8 36 36 H 1.09004 * 111.00264 * 81.06501 * 12 11 10 37 37 H 1.09001 * 111.00694 * 204.91209 * 12 11 10 38 38 H 0.96701 * 114.00239 * 180.02562 * 14 13 12 39 39 H 0.96998 * 120.00001 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.88608 * 298.40208 * 23 10 8 41 41 H 1.09006 * 109.88091 * 59.56224 * 23 10 8 42 42 H 1.08993 * 109.68633 * 189.73784 * 24 5 4 43 43 H 1.09002 * 109.67692 * 69.19000 * 24 5 4 44 44 H 1.08996 * 109.47442 * 180.10288 * 26 25 24 45 45 H 1.09000 * 109.47069 * 60.09852 * 26 25 24 46 46 H 1.09011 * 109.46979 * 300.10162 * 26 25 24 47 47 H 1.09002 * 109.46743 * 299.89609 * 27 25 24 48 48 H 1.08995 * 109.47237 * 59.89732 * 27 25 24 49 49 H 1.09002 * 109.47358 * 179.90082 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7246 -1.2501 5 7 3.5011 -0.8756 -1.1341 6 6 4.3193 -0.5024 -2.1379 7 8 5.5213 -0.4988 -1.9716 8 6 3.7461 -0.0929 -3.4560 9 8 2.5566 -0.2127 -3.6639 10 7 4.5504 0.4094 -4.4138 11 6 6.0065 0.6078 -4.2961 12 6 6.3393 1.7200 -5.3218 13 6 5.3738 1.3702 -6.4848 14 8 5.9341 0.3538 -7.3186 15 6 5.0452 2.5990 -7.2930 16 1 5.4723 3.5534 -7.0224 17 6 4.1995 2.5049 -8.3777 18 7 3.6798 1.3427 -8.7075 19 14 3.7916 4.0282 -9.3790 20 1 4.7799 4.1780 -10.4772 21 1 2.4293 3.8925 -9.9542 22 1 3.8414 5.2253 -8.5016 23 6 4.1220 0.8442 -5.7513 24 6 4.0406 -1.4458 0.1106 25 6 3.4313 -0.6860 1.2944 26 6 3.8213 -1.3788 2.6016 27 6 3.9540 0.7519 1.3024 28 8 2.0075 -0.6758 1.1657 29 1 -0.3633 -1.0276 0.0018 30 1 -0.3633 0.5154 0.8891 31 1 -0.3634 0.5123 -0.8908 32 1 1.8030 -0.1389 -2.1377 33 1 1.5757 -1.7072 -1.3217 34 1 6.2648 0.9319 -3.2879 35 1 6.5361 -0.3111 -4.5475 36 1 6.1185 2.7064 -4.9139 37 1 7.3786 1.6560 -5.6440 38 1 5.3697 0.0991 -8.0614 39 1 3.0845 1.2765 -9.4704 40 1 3.6970 0.0015 -6.2967 41 1 3.3838 1.6414 -5.6632 42 1 5.1251 -1.3377 0.1241 43 1 3.7756 -2.5011 0.1760 44 1 3.3862 -0.8392 3.4427 45 1 4.9070 -1.3879 2.6981 46 1 3.4485 -2.4032 2.5952 47 1 5.0397 0.7432 1.3988 48 1 3.6758 1.2448 0.3709 49 1 3.5190 1.2920 2.1433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327023736.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:45 Heat of formation + Delta-G solvation = -159.695726 kcal Electronic energy + Delta-G solvation = -31872.659226 eV Core-core repulsion = 27606.938946 eV Total energy + Delta-G solvation = -4265.720280 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.32295 -40.92686 -39.61359 -39.04771 -36.56493 -35.64135 -35.44468 -34.19257 -31.95340 -31.79881 -29.83844 -28.69542 -28.40191 -27.80967 -27.07071 -24.92855 -23.27548 -22.93942 -21.50527 -20.83448 -20.32617 -19.20045 -18.45022 -18.26110 -17.72971 -17.59150 -17.11073 -17.06871 -16.40477 -16.15081 -15.86721 -15.69841 -15.49269 -14.95537 -14.86282 -14.79746 -14.62954 -14.25533 -14.06799 -13.57583 -13.54502 -13.46394 -13.45094 -13.20640 -12.95571 -12.88722 -12.87460 -12.86680 -12.63884 -12.46132 -12.36253 -12.32401 -12.25199 -12.11425 -12.03317 -11.59010 -11.21896 -11.08998 -10.67518 -10.46489 -10.25573 -9.85548 -9.66624 -8.28855 -6.44753 0.21325 1.07579 1.42639 1.44895 1.54093 1.96334 2.19169 2.37930 2.58586 2.96084 3.00827 3.50545 3.70882 3.75609 3.85988 3.88289 3.98177 4.02440 4.11778 4.24001 4.29697 4.31620 4.40864 4.56290 4.57096 4.62161 4.66820 4.72809 4.77359 4.79709 4.89747 4.90420 4.95786 4.99326 5.02915 5.06203 5.15165 5.17878 5.25133 5.29532 5.33196 5.42236 5.72138 5.81256 5.99177 6.17350 6.23120 6.47418 6.63036 6.79635 7.27121 7.36885 8.77608 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019101 B = 0.002966 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.547587 B = 9437.462673 C =10139.539143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.075 3.925 3 H 0.061 0.939 4 C 0.047 3.953 5 N -0.581 5.581 6 C 0.517 3.483 7 O -0.526 6.526 8 C 0.502 3.498 9 O -0.544 6.544 10 N -0.580 5.580 11 C 0.111 3.889 12 C -0.114 4.114 13 C 0.234 3.766 14 O -0.590 6.590 15 C -0.557 4.557 16 H 0.069 0.931 17 C 0.028 3.972 18 N -0.916 5.916 19 Si 0.965 3.035 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.267 1.267 23 C 0.116 3.884 24 C 0.083 3.917 25 C 0.099 3.901 26 C -0.131 4.131 27 C -0.173 4.173 28 O -0.375 6.375 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.127 0.873 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.380 0.620 39 H 0.273 0.727 40 H 0.043 0.957 41 H 0.052 0.948 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.077 0.923 48 H 0.039 0.961 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.091 -3.450 20.710 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.016 3.984 3 H 0.079 0.921 4 C -0.074 4.074 5 N -0.314 5.314 6 C 0.300 3.700 7 O -0.403 6.403 8 C 0.286 3.714 9 O -0.425 6.425 10 N -0.311 5.311 11 C -0.010 4.010 12 C -0.152 4.152 13 C 0.194 3.806 14 O -0.399 6.399 15 C -0.595 4.595 16 H 0.087 0.913 17 C -0.173 4.173 18 N -0.556 5.556 19 Si 0.791 3.209 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.192 1.192 23 C -0.007 4.007 24 C -0.038 4.038 25 C 0.059 3.941 26 C -0.188 4.188 27 C -0.230 4.230 28 O -0.295 6.295 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.144 0.856 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.231 0.769 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.122 0.878 43 H 0.109 0.891 44 H 0.093 0.907 45 H 0.109 0.891 46 H 0.089 0.911 47 H 0.096 0.904 48 H 0.058 0.942 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.842 -3.675 21.174 21.569 hybrid contribution -0.796 0.543 -1.755 2.002 sum -2.638 -3.132 19.418 19.845 Atomic orbital electron populations 1.21706 0.90488 1.03730 1.03589 1.22549 0.96791 0.95170 0.83864 0.92135 1.23488 0.77872 1.03842 1.02236 1.47984 1.08040 1.60155 1.15249 1.19803 0.86514 0.78895 0.84796 1.90684 1.14498 1.52977 1.82173 1.20165 0.86043 0.79554 0.85613 1.90491 1.15384 1.56262 1.80411 1.48744 1.10503 1.57769 1.14115 1.22592 0.78295 0.99170 1.00982 1.22834 1.00596 0.97947 0.93848 1.19707 0.87436 0.85826 0.87667 1.86088 1.50271 1.59320 1.44244 1.21812 1.29158 0.95170 1.13314 0.91280 1.25801 0.94337 0.99303 0.97881 1.69660 1.32251 1.25286 1.28378 0.85436 0.77343 0.79497 0.78663 1.19982 1.20928 1.19180 1.22828 1.00260 0.97531 0.80047 1.22691 1.01127 0.98267 0.81763 1.22009 0.80928 0.95502 0.95652 1.21732 1.02774 1.00918 0.93366 1.22355 1.02637 0.96045 1.01989 1.87984 1.20916 1.77225 1.43398 0.91193 0.90494 0.90128 0.85587 0.90087 0.88172 0.91393 0.89503 0.89096 0.76928 0.91795 0.93900 0.93001 0.87827 0.89142 0.90660 0.89137 0.91091 0.90449 0.94180 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.57 71.98 0.69 -1.65 16 2 C 0.07 1.60 3.01 30.69 0.09 1.69 16 3 H 0.06 1.36 6.26 -2.39 -0.01 1.35 16 4 C 0.05 1.22 5.42 86.35 0.47 1.69 16 5 N -0.58 -15.92 2.54 -818.95 -2.08 -18.00 16 6 C 0.52 17.32 7.70 87.27 0.67 17.99 16 7 O -0.53 -18.25 13.37 -3.22 -0.04 -18.29 16 8 C 0.50 19.78 7.77 87.27 0.68 20.46 16 9 O -0.54 -22.74 13.54 -3.25 -0.04 -22.79 16 10 N -0.58 -24.28 3.33 -813.34 -2.70 -26.98 16 11 C 0.11 4.18 5.95 86.86 0.52 4.70 16 12 C -0.11 -4.54 6.23 31.98 0.20 -4.34 16 13 C 0.23 11.29 0.86 -10.35 -0.01 11.28 16 14 O -0.59 -30.09 13.08 -148.98 -1.95 -32.03 16 15 C -0.56 -28.57 8.11 25.60 0.21 -28.37 16 16 H 0.07 3.45 7.76 -2.91 -0.02 3.43 16 17 C 0.03 1.41 5.28 84.65 0.45 1.86 16 18 N -0.92 -48.30 10.97 21.45 0.24 -48.07 16 19 Si 0.97 40.94 29.54 68.60 2.03 42.97 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 C 0.12 5.57 5.54 86.73 0.48 6.05 16 24 C 0.08 1.76 5.33 86.35 0.46 2.22 16 25 C 0.10 1.80 1.11 -10.70 -0.01 1.79 16 26 C -0.13 -1.61 8.85 71.98 0.64 -0.97 16 27 C -0.17 -3.19 8.09 71.98 0.58 -2.60 16 28 O -0.38 -7.89 9.87 -148.98 -1.47 -9.36 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.13 3.89 4.50 -33.75 -0.15 3.74 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.10 3.43 6.36 -2.38 -0.02 3.41 16 35 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.09 3.25 8.02 -2.38 -0.02 3.23 16 37 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 38 H 0.38 20.10 6.98 -74.06 -0.52 19.58 16 39 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 40 H 0.04 2.27 8.07 -2.39 -0.02 2.25 16 41 H 0.05 2.67 7.81 -2.38 -0.02 2.65 16 42 H 0.10 2.22 7.06 -2.39 -0.02 2.21 16 43 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 47 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.04 0.91 6.12 -2.39 -0.01 0.89 16 49 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -59.64 381.32 0.39 -59.26 By element: Atomic # 1 Polarization: 41.21 SS G_CDS: 0.31 Total: 41.51 kcal Atomic # 6 Polarization: 25.68 SS G_CDS: 6.11 Total: 31.79 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -4.55 Total: -93.05 kcal Atomic # 8 Polarization: -78.97 SS G_CDS: -3.51 Total: -82.48 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -59.64 0.39 -59.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327023736.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.440 kcal (2) G-P(sol) polarization free energy of solvation -59.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds