Wall clock time and date at job start Sat Apr 11 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.67947 * 2 1 4 4 N 1.47155 * 109.68305 * 120.52049 * 2 1 3 5 5 C 1.34779 * 120.98099 * 249.16763 * 4 2 1 6 6 O 1.21346 * 119.99629 * 352.13443 * 5 4 2 7 7 C 1.49447 * 119.99756 * 172.13880 * 5 4 2 8 8 O 1.21352 * 120.00185 * 353.31126 * 7 5 4 9 9 N 1.34772 * 119.99665 * 173.32018 * 7 5 4 10 10 C 1.47026 * 125.65197 * 359.68307 * 9 7 5 11 11 C 1.54336 * 107.26639 * 178.85401 * 10 9 7 12 12 C 1.55150 * 103.02012 * 338.14181 * 11 10 9 13 13 O 1.42900 * 111.04074 * 277.21887 * 12 11 10 14 14 C 1.50702 * 111.00584 * 153.38322 * 12 11 10 15 15 H 1.08007 * 119.99556 * 6.34375 * 14 12 11 16 16 C 1.37875 * 120.00388 * 186.35050 * 14 12 11 17 17 N 1.31512 * 119.99757 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00272 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46849 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47039 * 119.99602 * 18 16 14 21 21 H 1.48497 * 109.47194 * 240.00184 * 18 16 14 22 22 C 1.47433 * 125.64748 * 179.97438 * 9 7 5 23 23 C 1.47150 * 118.03439 * 69.18555 * 4 2 1 24 24 C 1.53297 * 108.41507 * 50.52195 * 23 4 2 25 25 O 1.42974 * 109.21322 * 307.74980 * 24 23 4 26 26 C 1.42961 * 114.20005 * 62.52952 * 25 24 23 27 27 C 1.53001 * 109.51321 * 177.51183 * 26 25 24 28 28 C 1.52997 * 109.55856 * 57.38032 * 26 25 24 29 29 H 1.08997 * 109.47020 * 299.47738 * 1 2 3 30 30 H 1.08996 * 109.47236 * 59.48224 * 1 2 3 31 31 H 1.09004 * 109.46818 * 179.48033 * 1 2 3 32 32 H 1.09002 * 109.87823 * 298.40158 * 10 9 7 33 33 H 1.08999 * 109.87995 * 59.56234 * 10 9 7 34 34 H 1.09002 * 110.84907 * 219.67280 * 11 10 9 35 35 H 1.09001 * 110.51397 * 96.45554 * 11 10 9 36 36 H 0.96700 * 114.00385 * 173.67091 * 13 12 11 37 37 H 0.97008 * 119.99904 * 180.02562 * 17 16 14 38 38 H 1.08993 * 110.36668 * 322.92782 * 22 9 7 39 39 H 1.08998 * 110.36424 * 85.14110 * 22 9 7 40 40 H 1.08997 * 109.68064 * 170.25471 * 23 4 2 41 41 H 1.08997 * 109.68414 * 290.77785 * 23 4 2 42 42 H 1.08997 * 109.51857 * 67.63725 * 24 23 4 43 43 H 1.09005 * 109.51508 * 187.79459 * 24 23 4 44 44 H 1.09003 * 109.47091 * 179.74245 * 27 26 25 45 45 H 1.08998 * 109.47002 * 299.74034 * 27 26 25 46 46 H 1.09006 * 109.47479 * 59.74387 * 27 26 25 47 47 H 1.09000 * 109.47191 * 300.23611 * 28 26 25 48 48 H 1.09007 * 109.46625 * 60.22931 * 28 26 25 49 49 H 1.08999 * 109.47530 * 180.22482 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 7 2.0257 -0.7037 1.1936 5 6 2.6463 -0.0348 2.1856 6 8 2.9310 1.1361 2.0422 7 6 2.9838 -0.7352 3.4619 8 8 2.5933 -1.8680 3.6540 9 7 3.7217 -0.1086 4.3995 10 6 4.2625 1.2546 4.2947 11 6 5.0105 1.5531 5.6113 12 6 4.3766 0.5483 6.6091 13 8 3.1485 1.0542 7.1362 14 6 5.3383 0.2094 7.7188 15 1 6.2808 0.7314 7.7947 16 6 5.0152 -0.7671 8.6369 17 7 3.8679 -1.4032 8.5440 18 14 6.2076 -1.1877 10.0120 19 1 7.4182 -0.3356 9.8951 20 1 5.5561 -0.9438 11.3239 21 1 6.5962 -2.6173 9.9102 22 6 4.1254 -0.6788 5.6978 23 6 1.8241 -2.1592 1.2719 24 6 2.3254 -2.7884 -0.0329 25 8 1.7168 -2.1212 -1.1413 26 6 2.0464 -0.7338 -1.2430 27 6 1.3919 -0.1434 -2.4936 28 6 3.5650 -0.5736 -1.3369 29 1 -0.3633 0.5057 0.8946 30 1 -0.3633 0.5218 -0.8853 31 1 -0.3633 -1.0277 -0.0093 32 1 4.9515 1.3162 3.4524 33 1 3.4483 1.9673 4.1633 34 1 4.8344 2.5795 5.9334 35 1 6.0774 1.3616 5.4964 36 1 2.6677 0.4227 7.6885 37 1 3.6403 -2.0900 9.1902 38 1 3.3258 -1.2970 6.1057 39 1 5.0381 -1.2644 5.5876 40 1 2.3864 -2.5629 2.1138 41 1 0.7638 -2.3765 1.4006 42 1 3.4085 -2.6832 -0.0953 43 1 2.0598 -3.8454 -0.0531 44 1 1.6398 0.9155 -2.5680 45 1 1.7594 -0.6655 -3.3770 46 1 0.3100 -0.2594 -2.4268 47 1 4.0307 -0.9961 -0.4466 48 1 3.9314 -1.0956 -2.2210 49 1 3.8149 0.4848 -1.4104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327025064.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:59 Heat of formation + Delta-G solvation = -136.964957 kcal Electronic energy + Delta-G solvation = -32129.910986 eV Core-core repulsion = 27865.176387 eV Total energy + Delta-G solvation = -4264.734599 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.14718 -39.67290 -38.14722 -37.37021 -35.17671 -34.42821 -34.03522 -32.28744 -30.33726 -30.29693 -28.99915 -27.99888 -27.61163 -25.97845 -24.50851 -23.53572 -23.06305 -21.68295 -19.78558 -19.42237 -18.82205 -17.29110 -17.09425 -17.00983 -16.38927 -16.12218 -15.68917 -15.38984 -15.19615 -15.08044 -14.47355 -14.38311 -14.22944 -13.68331 -13.55260 -13.17487 -13.09745 -12.91936 -12.84308 -12.62008 -12.50055 -12.34630 -12.18484 -12.10171 -11.81808 -11.70195 -11.56219 -11.46702 -11.28631 -11.09956 -10.92511 -10.80457 -10.62451 -10.49237 -10.40545 -10.25091 -10.15016 -9.41541 -8.97148 -8.73395 -8.61070 -8.43042 -7.96412 -6.33586 -4.43104 1.71132 2.43373 3.16554 3.25856 3.29286 3.46775 3.48039 3.67829 4.22103 4.31005 4.52255 4.56246 4.69210 4.87250 4.94059 5.03481 5.05105 5.16845 5.31327 5.36035 5.37643 5.43549 5.49157 5.54403 5.59275 5.65088 5.73224 5.74713 5.77612 5.87398 5.95797 5.97808 6.01236 6.08373 6.24371 6.32942 6.46589 6.68374 6.77093 6.79930 7.00508 7.10458 7.14300 7.26337 7.68464 7.73984 7.96119 8.00134 8.37066 8.61488 9.24363 9.32914 10.73591 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024235 B = 0.002869 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.095106 B = 9756.176300 C =10112.599242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.113 3.887 3 H 0.107 0.893 4 N -0.585 5.585 5 C 0.513 3.487 6 O -0.516 6.516 7 C 0.509 3.491 8 O -0.530 6.530 9 N -0.571 5.571 10 C 0.110 3.890 11 C -0.121 4.121 12 C 0.248 3.752 13 O -0.581 6.581 14 C -0.536 4.536 15 H 0.069 0.931 16 C 0.071 3.929 17 N -0.893 5.893 18 Si 0.904 3.096 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.282 1.282 22 C 0.091 3.909 23 C 0.041 3.959 24 C 0.044 3.956 25 O -0.372 6.372 26 C 0.106 3.894 27 C -0.138 4.138 28 C -0.176 4.176 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.381 0.619 37 H 0.270 0.730 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.148 0.852 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.106 0.894 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.061 0.939 48 H 0.065 0.935 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.619 0.022 -18.761 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.010 3.990 3 H 0.125 0.875 4 N -0.320 5.320 5 C 0.297 3.703 6 O -0.392 6.392 7 C 0.292 3.708 8 O -0.411 6.411 9 N -0.301 5.301 10 C -0.013 4.013 11 C -0.159 4.159 12 C 0.208 3.792 13 O -0.389 6.389 14 C -0.574 4.574 15 H 0.087 0.913 16 C -0.133 4.133 17 N -0.532 5.532 18 Si 0.732 3.268 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.029 4.029 23 C -0.080 4.080 24 C -0.033 4.033 25 O -0.291 6.291 26 C 0.066 3.934 27 C -0.196 4.196 28 C -0.233 4.233 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.231 0.769 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.165 0.835 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.124 0.876 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.080 0.920 48 H 0.084 0.916 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.731 0.357 -19.137 19.501 hybrid contribution 0.508 -0.803 1.260 1.578 sum -3.222 -0.446 -17.878 18.171 Atomic orbital electron populations 1.22107 0.94050 1.03086 1.02428 1.21922 0.95113 0.97960 0.84039 0.87533 1.47989 1.56694 1.08976 1.18377 1.20372 0.78391 0.86856 0.84709 1.90710 1.51757 1.16193 1.80496 1.19569 0.80503 0.86195 0.84538 1.90474 1.54333 1.18074 1.78241 1.48715 1.47170 1.16468 1.17781 1.22178 0.97929 0.82756 0.98426 1.22711 0.99108 1.00957 0.93120 1.19638 0.83380 0.86689 0.89510 1.86136 1.37022 1.45575 1.70186 1.21497 1.04054 1.20583 1.11297 0.91321 1.25091 0.95516 0.94954 0.97713 1.69718 1.21851 1.24891 1.36728 0.86332 0.80894 0.78219 0.81374 1.19553 1.20727 1.20768 1.23518 1.00518 0.99601 0.79285 1.23422 1.04187 0.79074 1.01359 1.23094 0.97687 0.97102 0.85426 1.87964 1.71577 1.21336 1.48186 1.21815 0.94532 0.82442 0.94633 1.21824 1.01591 1.00581 0.95582 1.22368 0.95353 1.02998 1.02613 0.92217 0.90912 0.91521 0.91942 0.90867 0.90452 0.90360 0.76927 0.92004 0.89007 0.91336 0.83543 0.90702 0.92459 0.87593 0.90826 0.91476 0.91118 0.92005 0.91611 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 8.64 37.16 0.32 -1.34 16 2 C 0.11 1.34 2.25 -67.42 -0.15 1.19 16 3 H 0.11 1.34 7.06 -51.93 -0.37 0.98 16 4 N -0.59 -8.31 2.23 -165.25 -0.37 -8.68 16 5 C 0.51 8.85 7.70 -11.59 -0.09 8.76 16 6 O -0.52 -9.44 13.65 5.50 0.08 -9.37 16 7 C 0.51 10.01 7.77 -11.59 -0.09 9.92 16 8 O -0.53 -10.93 13.47 5.49 0.07 -10.85 16 9 N -0.57 -11.83 3.33 -171.03 -0.57 -12.40 16 10 C 0.11 2.09 5.51 -3.06 -0.02 2.07 16 11 C -0.12 -2.43 6.13 -24.89 -0.15 -2.58 16 12 C 0.25 5.90 0.87 -89.64 -0.08 5.82 16 13 O -0.58 -14.61 13.16 -35.23 -0.46 -15.08 16 14 C -0.54 -13.60 8.27 -34.44 -0.28 -13.89 16 15 H 0.07 1.72 7.79 -52.48 -0.41 1.31 16 16 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 17 N -0.89 -23.12 10.69 55.43 0.59 -22.53 16 18 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 22 C 0.09 2.12 5.38 -2.54 -0.01 2.10 16 23 C 0.04 0.54 5.74 -3.53 -0.02 0.52 16 24 C 0.04 0.48 6.60 37.31 0.25 0.72 16 25 O -0.37 -4.21 9.85 -35.23 -0.35 -4.56 16 26 C 0.11 1.09 0.81 -90.47 -0.07 1.02 16 27 C -0.14 -1.08 8.29 37.16 0.31 -0.77 16 28 C -0.18 -1.79 8.10 37.16 0.30 -1.49 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.60 6.42 -51.93 -0.33 0.26 16 31 H 0.07 0.72 7.23 -51.93 -0.38 0.34 16 32 H 0.06 1.09 7.85 -51.93 -0.41 0.68 16 33 H 0.07 1.43 7.43 -51.93 -0.39 1.04 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 35 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 36 H 0.38 9.76 7.56 45.56 0.34 10.10 16 37 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 38 H 0.09 2.35 7.33 -51.93 -0.38 1.97 16 39 H 0.07 1.61 8.03 -51.93 -0.42 1.19 16 40 H 0.15 2.21 4.49 -53.95 -0.24 1.97 16 41 H 0.07 0.94 7.67 -51.93 -0.40 0.55 16 42 H 0.06 0.62 6.26 -51.93 -0.32 0.30 16 43 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.53 6.38 -51.93 -0.33 0.19 16 47 H 0.06 0.73 6.12 -51.93 -0.32 0.41 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 375.53 15.07 5.66 5.66 Total: -1.00 -28.07 375.53 -7.11 -35.19 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -6.86 Total: 13.98 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 0.11 Total: 13.75 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: -0.35 Total: -43.61 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -0.66 Total: -39.85 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.07 -7.11 -35.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327025064.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.778 kcal (2) G-P(sol) polarization free energy of solvation -28.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds