Wall clock time and date at job start Sat Apr 11 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.67947 * 2 1 4 4 N 1.47155 * 109.68305 * 120.52049 * 2 1 3 5 5 C 1.34779 * 120.98099 * 249.16763 * 4 2 1 6 6 O 1.21346 * 119.99629 * 352.13443 * 5 4 2 7 7 C 1.49447 * 119.99756 * 172.13880 * 5 4 2 8 8 O 1.21352 * 120.00185 * 353.31126 * 7 5 4 9 9 N 1.34772 * 119.99665 * 173.32018 * 7 5 4 10 10 C 1.47026 * 125.65197 * 359.68307 * 9 7 5 11 11 C 1.54336 * 107.26639 * 178.85401 * 10 9 7 12 12 C 1.55150 * 103.02012 * 338.14181 * 11 10 9 13 13 O 1.42900 * 111.04074 * 277.21887 * 12 11 10 14 14 C 1.50702 * 111.00584 * 153.38322 * 12 11 10 15 15 H 1.08007 * 119.99556 * 6.34375 * 14 12 11 16 16 C 1.37875 * 120.00388 * 186.35050 * 14 12 11 17 17 N 1.31512 * 119.99757 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00272 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46849 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47039 * 119.99602 * 18 16 14 21 21 H 1.48497 * 109.47194 * 240.00184 * 18 16 14 22 22 C 1.47433 * 125.64748 * 179.97438 * 9 7 5 23 23 C 1.47150 * 118.03439 * 69.18555 * 4 2 1 24 24 C 1.53297 * 108.41507 * 50.52195 * 23 4 2 25 25 O 1.42974 * 109.21322 * 307.74980 * 24 23 4 26 26 C 1.42961 * 114.20005 * 62.52952 * 25 24 23 27 27 C 1.53001 * 109.51321 * 177.51183 * 26 25 24 28 28 C 1.52997 * 109.55856 * 57.38032 * 26 25 24 29 29 H 1.08997 * 109.47020 * 299.47738 * 1 2 3 30 30 H 1.08996 * 109.47236 * 59.48224 * 1 2 3 31 31 H 1.09004 * 109.46818 * 179.48033 * 1 2 3 32 32 H 1.09002 * 109.87823 * 298.40158 * 10 9 7 33 33 H 1.08999 * 109.87995 * 59.56234 * 10 9 7 34 34 H 1.09002 * 110.84907 * 219.67280 * 11 10 9 35 35 H 1.09001 * 110.51397 * 96.45554 * 11 10 9 36 36 H 0.96700 * 114.00385 * 173.67091 * 13 12 11 37 37 H 0.97008 * 119.99904 * 180.02562 * 17 16 14 38 38 H 1.08993 * 110.36668 * 322.92782 * 22 9 7 39 39 H 1.08998 * 110.36424 * 85.14110 * 22 9 7 40 40 H 1.08997 * 109.68064 * 170.25471 * 23 4 2 41 41 H 1.08997 * 109.68414 * 290.77785 * 23 4 2 42 42 H 1.08997 * 109.51857 * 67.63725 * 24 23 4 43 43 H 1.09005 * 109.51508 * 187.79459 * 24 23 4 44 44 H 1.09003 * 109.47091 * 179.74245 * 27 26 25 45 45 H 1.08998 * 109.47002 * 299.74034 * 27 26 25 46 46 H 1.09006 * 109.47479 * 59.74387 * 27 26 25 47 47 H 1.09000 * 109.47191 * 300.23611 * 28 26 25 48 48 H 1.09007 * 109.46625 * 60.22931 * 28 26 25 49 49 H 1.08999 * 109.47530 * 180.22482 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 7 2.0257 -0.7037 1.1936 5 6 2.6463 -0.0348 2.1856 6 8 2.9310 1.1361 2.0422 7 6 2.9838 -0.7352 3.4619 8 8 2.5933 -1.8680 3.6540 9 7 3.7217 -0.1086 4.3995 10 6 4.2625 1.2546 4.2947 11 6 5.0105 1.5531 5.6113 12 6 4.3766 0.5483 6.6091 13 8 3.1485 1.0542 7.1362 14 6 5.3383 0.2094 7.7188 15 1 6.2808 0.7314 7.7947 16 6 5.0152 -0.7671 8.6369 17 7 3.8679 -1.4032 8.5440 18 14 6.2076 -1.1877 10.0120 19 1 7.4182 -0.3356 9.8951 20 1 5.5561 -0.9438 11.3239 21 1 6.5962 -2.6173 9.9102 22 6 4.1254 -0.6788 5.6978 23 6 1.8241 -2.1592 1.2719 24 6 2.3254 -2.7884 -0.0329 25 8 1.7168 -2.1212 -1.1413 26 6 2.0464 -0.7338 -1.2430 27 6 1.3919 -0.1434 -2.4936 28 6 3.5650 -0.5736 -1.3369 29 1 -0.3633 0.5057 0.8946 30 1 -0.3633 0.5218 -0.8853 31 1 -0.3633 -1.0277 -0.0093 32 1 4.9515 1.3162 3.4524 33 1 3.4483 1.9673 4.1633 34 1 4.8344 2.5795 5.9334 35 1 6.0774 1.3616 5.4964 36 1 2.6677 0.4227 7.6885 37 1 3.6403 -2.0900 9.1902 38 1 3.3258 -1.2970 6.1057 39 1 5.0381 -1.2644 5.5876 40 1 2.3864 -2.5629 2.1138 41 1 0.7638 -2.3765 1.4006 42 1 3.4085 -2.6832 -0.0953 43 1 2.0598 -3.8454 -0.0531 44 1 1.6398 0.9155 -2.5680 45 1 1.7594 -0.6655 -3.3770 46 1 0.3100 -0.2594 -2.4268 47 1 4.0307 -0.9961 -0.4466 48 1 3.9314 -1.0956 -2.2210 49 1 3.8149 0.4848 -1.4104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327025064.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:59 Heat of formation + Delta-G solvation = -156.531501 kcal Electronic energy + Delta-G solvation = -32130.759455 eV Core-core repulsion = 27865.176387 eV Total energy + Delta-G solvation = -4265.583068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.36716 -40.99567 -39.56938 -38.99656 -36.53440 -35.76234 -35.14750 -34.25495 -31.99996 -31.20415 -30.05572 -29.73409 -28.41064 -27.64146 -25.90998 -24.57213 -24.35030 -23.02956 -21.55935 -20.71314 -19.91598 -19.15840 -18.40958 -18.35846 -17.60479 -17.38739 -17.14827 -16.92999 -16.55205 -16.25118 -16.02317 -15.68050 -15.43738 -15.01732 -14.77714 -14.71624 -14.57333 -14.36085 -14.01186 -13.83018 -13.56063 -13.54015 -13.34539 -13.14942 -13.00158 -12.96507 -12.86883 -12.70292 -12.61900 -12.44037 -12.35330 -12.26848 -12.13476 -12.12698 -12.00372 -11.42396 -11.21951 -11.11992 -10.71355 -10.46749 -10.21661 -9.77537 -9.60291 -8.26319 -6.43030 0.24966 1.10582 1.41945 1.45841 1.56180 2.00293 2.22025 2.39168 2.69990 2.99326 3.03777 3.48135 3.72094 3.73971 3.89493 3.92546 4.02123 4.11032 4.12911 4.15017 4.26445 4.28496 4.43099 4.55878 4.63571 4.66513 4.69560 4.72598 4.75491 4.81032 4.84958 4.90005 4.94915 4.98908 5.03309 5.09958 5.15450 5.17028 5.25637 5.31471 5.38891 5.41743 5.73313 5.87282 6.03373 6.15147 6.24919 6.51857 6.65856 6.83569 7.25219 7.33729 8.79453 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024235 B = 0.002869 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.095106 B = 9756.176300 C =10112.599242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.107 3.893 3 H 0.101 0.899 4 N -0.576 5.576 5 C 0.516 3.484 6 O -0.530 6.530 7 C 0.502 3.498 8 O -0.545 6.545 9 N -0.580 5.580 10 C 0.118 3.882 11 C -0.114 4.114 12 C 0.233 3.767 13 O -0.588 6.588 14 C -0.554 4.554 15 H 0.070 0.930 16 C 0.028 3.972 17 N -0.914 5.914 18 Si 0.965 3.035 19 H -0.265 1.265 20 H -0.282 1.282 21 H -0.281 1.281 22 C 0.108 3.892 23 C 0.040 3.960 24 C 0.050 3.950 25 O -0.375 6.375 26 C 0.105 3.895 27 C -0.136 4.136 28 C -0.174 4.174 29 H 0.045 0.955 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.374 0.626 37 H 0.270 0.730 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.126 0.874 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.129 0.871 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.041 0.959 48 H 0.078 0.922 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.391 0.325 -20.812 21.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.005 3.995 3 H 0.119 0.881 4 N -0.309 5.309 5 C 0.298 3.702 6 O -0.407 6.407 7 C 0.286 3.714 8 O -0.427 6.427 9 N -0.311 5.311 10 C -0.004 4.004 11 C -0.152 4.152 12 C 0.192 3.808 13 O -0.396 6.396 14 C -0.592 4.592 15 H 0.088 0.912 16 C -0.173 4.173 17 N -0.553 5.553 18 Si 0.790 3.210 19 H -0.189 1.189 20 H -0.207 1.207 21 H -0.206 1.206 22 C -0.014 4.014 23 C -0.081 4.081 24 C -0.027 4.027 25 O -0.294 6.294 26 C 0.065 3.935 27 C -0.193 4.193 28 C -0.231 4.231 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.223 0.777 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.143 0.857 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.147 0.853 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.060 0.940 48 H 0.097 0.903 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.516 0.658 -21.235 21.534 hybrid contribution 0.380 -0.942 1.848 2.108 sum -3.136 -0.284 -19.387 19.641 Atomic orbital electron populations 1.22096 0.92755 1.03173 1.03122 1.22227 0.96092 0.97705 0.83487 0.88064 1.48097 1.55140 1.09557 1.18140 1.19857 0.79291 0.86610 0.84415 1.90696 1.52929 1.16417 1.80647 1.20166 0.79772 0.86130 0.85295 1.90488 1.54504 1.18790 1.78871 1.48743 1.48027 1.17079 1.17271 1.22168 0.97972 0.81671 0.98558 1.22718 0.99795 1.00372 0.92337 1.19869 0.82785 0.88137 0.89970 1.86129 1.37684 1.45606 1.70159 1.21768 1.04426 1.20859 1.12137 0.91229 1.25801 0.96897 0.94865 0.99715 1.69825 1.23063 1.25103 1.37283 0.85396 0.79114 0.77869 0.78579 1.18926 1.20741 1.20642 1.23062 0.98774 0.98959 0.80620 1.23402 1.04168 0.78409 1.02132 1.23097 0.97592 0.98019 0.83990 1.87976 1.71661 1.21822 1.47899 1.21969 0.94804 0.81893 0.94813 1.21858 1.01750 1.01386 0.94283 1.22361 0.95189 1.03365 1.02220 0.93595 0.88134 0.91721 0.89889 0.91288 0.89694 0.88853 0.77704 0.92041 0.92198 0.92345 0.85664 0.90214 0.92493 0.85342 0.89355 0.90635 0.90490 0.93991 0.90322 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.64 71.98 0.62 -2.29 16 2 C 0.11 2.36 2.25 44.97 0.10 2.46 16 3 H 0.10 2.39 7.06 -2.39 -0.02 2.37 16 4 N -0.58 -15.99 2.23 -795.08 -1.78 -17.77 16 5 C 0.52 17.74 7.70 87.27 0.67 18.41 16 6 O -0.53 -19.09 13.65 -3.23 -0.04 -19.14 16 7 C 0.50 20.14 7.77 87.27 0.68 20.82 16 8 O -0.55 -23.17 13.47 -3.25 -0.04 -23.21 16 9 N -0.58 -24.44 3.33 -813.37 -2.71 -27.14 16 10 C 0.12 4.45 5.51 86.73 0.48 4.93 16 11 C -0.11 -4.52 6.13 31.78 0.19 -4.33 16 12 C 0.23 11.20 0.87 -10.16 -0.01 11.19 16 13 O -0.59 -30.26 13.16 -148.98 -1.96 -32.22 16 14 C -0.55 -28.27 8.27 25.60 0.21 -28.06 16 15 H 0.07 3.46 7.79 -2.91 -0.02 3.43 16 16 C 0.03 1.45 5.29 84.65 0.45 1.90 16 17 N -0.91 -48.34 10.69 21.45 0.23 -48.11 16 18 Si 0.96 40.88 29.54 68.60 2.03 42.91 16 19 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 20 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 22 C 0.11 5.14 5.38 86.85 0.47 5.61 16 23 C 0.04 1.03 5.74 86.35 0.50 1.53 16 24 C 0.05 1.00 6.60 72.08 0.48 1.48 16 25 O -0.37 -7.57 9.85 -148.98 -1.47 -9.04 16 26 C 0.11 1.92 0.81 -10.69 -0.01 1.91 16 27 C -0.14 -1.67 8.29 71.98 0.60 -1.07 16 28 C -0.17 -3.20 8.10 71.98 0.58 -2.61 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.34 6.42 -2.39 -0.02 1.33 16 31 H 0.06 1.26 7.23 -2.38 -0.02 1.24 16 32 H 0.08 2.78 7.85 -2.39 -0.02 2.76 16 33 H 0.07 2.66 7.43 -2.39 -0.02 2.64 16 34 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.09 3.38 8.03 -2.39 -0.02 3.36 16 36 H 0.37 19.90 7.56 -74.06 -0.56 19.34 16 37 H 0.27 13.68 8.31 -92.70 -0.77 12.91 16 38 H 0.06 3.22 7.33 -2.39 -0.02 3.20 16 39 H 0.06 2.84 8.03 -2.39 -0.02 2.82 16 40 H 0.13 3.84 4.49 -34.35 -0.15 3.69 16 41 H 0.08 1.96 7.67 -2.39 -0.02 1.94 16 42 H 0.06 1.16 6.26 -2.39 -0.01 1.15 16 43 H 0.13 1.99 8.14 -2.38 -0.02 1.97 16 44 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 45 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.08 0.87 6.38 -2.38 -0.02 0.85 16 47 H 0.04 0.93 6.12 -2.39 -0.01 0.92 16 48 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 49 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -60.58 375.53 0.54 -60.04 By element: Atomic # 1 Polarization: 41.55 SS G_CDS: 0.27 Total: 41.82 kcal Atomic # 6 Polarization: 25.85 SS G_CDS: 6.01 Total: 31.86 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -4.25 Total: -93.02 kcal Atomic # 8 Polarization: -80.10 SS G_CDS: -3.52 Total: -83.61 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -60.58 0.54 -60.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327025064.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.489 kcal (2) G-P(sol) polarization free energy of solvation -60.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds