Wall clock time and date at job start Sat Apr 11 2020 06:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.51052 * 2 1 4 4 C 1.53289 * 109.51510 * 239.89420 * 2 1 3 5 5 N 1.47150 * 108.38795 * 292.33075 * 4 2 1 6 6 C 1.34777 * 120.98287 * 129.43913 * 5 4 2 7 7 O 1.21355 * 119.99474 * 174.98912 * 6 5 4 8 8 C 1.49445 * 120.00199 * 354.98594 * 6 5 4 9 9 O 1.21349 * 120.00271 * 274.64334 * 8 6 5 10 10 N 1.34783 * 119.99570 * 94.63991 * 8 6 5 11 11 C 1.46919 * 120.63222 * 4.76817 * 10 8 6 12 12 C 1.52759 * 109.01042 * 233.58201 * 11 10 8 13 13 C 1.53048 * 109.38276 * 305.58677 * 12 11 10 14 14 C 1.53044 * 109.53524 * 61.23580 * 13 12 11 15 15 H 1.09005 * 109.49531 * 58.58881 * 14 13 12 16 16 C 1.50696 * 109.49700 * 178.68482 * 14 13 12 17 17 H 1.08000 * 120.00270 * 359.84106 * 16 14 13 18 18 C 1.37880 * 120.00134 * 179.84361 * 16 14 13 19 19 N 1.31520 * 119.99915 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 120.00152 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47204 * 89.99747 * 20 18 16 22 22 H 1.48505 * 109.47237 * 209.99622 * 20 18 16 23 23 H 1.48493 * 109.47224 * 329.99707 * 20 18 16 24 24 C 1.46929 * 120.62833 * 185.04259 * 10 8 6 25 25 C 1.47150 * 118.03434 * 309.46428 * 5 4 2 26 26 C 1.53297 * 108.38613 * 50.53309 * 25 5 4 27 27 H 1.08998 * 109.51264 * 67.62309 * 26 25 5 28 28 C 1.52998 * 109.51275 * 187.77624 * 26 25 5 29 29 O 1.42903 * 109.47324 * 184.99869 * 28 26 25 30 30 O 1.42960 * 109.22068 * 307.69901 * 26 25 5 31 31 H 1.08999 * 109.47009 * 180.10110 * 1 2 3 32 32 H 1.09004 * 109.47344 * 300.10140 * 1 2 3 33 33 H 1.08997 * 109.47192 * 60.10173 * 1 2 3 34 34 H 1.08998 * 109.68285 * 172.60446 * 4 2 1 35 35 H 1.09004 * 109.67730 * 52.04888 * 4 2 1 36 36 H 1.08998 * 109.58860 * 353.41345 * 11 10 8 37 37 H 1.09001 * 109.59164 * 113.84151 * 11 10 8 38 38 H 1.08998 * 109.56936 * 185.55520 * 12 11 10 39 39 H 1.09002 * 109.38551 * 65.50946 * 12 11 10 40 40 H 1.09000 * 109.46224 * 301.22453 * 13 12 11 41 41 H 1.09000 * 109.46093 * 181.25471 * 13 12 11 42 42 H 0.96999 * 119.99753 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.58712 * 246.15803 * 24 10 8 44 44 H 1.09001 * 109.58397 * 6.44324 * 24 10 8 45 45 H 1.09010 * 109.67906 * 290.81094 * 25 5 4 46 46 H 1.08995 * 109.71435 * 170.27732 * 25 5 4 47 47 H 1.08998 * 109.47271 * 305.00155 * 28 26 25 48 48 H 1.09003 * 109.47033 * 64.99913 * 28 26 25 49 49 H 0.96694 * 114.00227 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7247 -1.2499 5 7 1.6971 -2.1505 -1.1339 6 6 1.0720 -2.7970 -2.1377 7 8 0.8772 -3.9924 -2.0611 8 6 0.6187 -2.0419 -3.3451 9 8 -0.4586 -1.4833 -3.3424 10 7 1.4066 -1.9812 -4.4369 11 6 2.6653 -2.7368 -4.4948 12 6 3.8043 -1.7804 -4.8434 13 6 3.4612 -1.0305 -6.1327 14 6 2.1861 -0.2103 -5.9237 15 1 2.3345 0.4897 -5.1014 16 6 1.8670 0.5530 -7.1833 17 1 2.5106 0.4645 -8.0461 18 6 0.7534 1.3644 -7.2344 19 7 -0.0306 1.4719 -6.1839 20 14 0.3583 2.3110 -8.7954 21 1 -0.5112 1.4833 -9.6696 22 1 -0.3468 3.5703 -8.4457 23 1 1.6186 2.6321 -9.5121 24 6 1.0261 -1.1533 -5.5896 25 6 2.0542 -2.8494 0.1109 26 6 1.5416 -2.0212 1.2946 27 1 0.4516 -2.0293 1.2998 28 6 2.0643 -2.6201 2.6018 29 8 1.4933 -1.9195 3.7087 30 8 2.0085 -0.6762 1.1653 31 1 -0.3633 -1.0277 0.0018 32 1 -0.3634 0.5154 0.8891 33 1 -0.3633 0.5122 -0.8909 34 1 3.1240 -0.6135 -1.3214 35 1 1.5697 -0.3039 -2.1376 36 1 2.8601 -3.1970 -3.5261 37 1 2.5931 -3.5091 -5.2606 38 1 4.7252 -2.3459 -4.9856 39 1 3.9379 -1.0657 -4.0314 40 1 3.3038 -1.7471 -6.9388 41 1 4.2829 -0.3639 -6.3947 42 1 -0.8142 2.0424 -6.2199 43 1 0.8174 -1.7938 -6.4465 44 1 0.1381 -0.5709 -5.3438 45 1 3.1375 -2.9520 0.1764 46 1 1.5906 -3.8357 0.1248 47 1 1.7868 -3.6727 2.6558 48 1 3.1500 -2.5285 2.6349 49 1 1.7813 -2.2463 4.5720 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327394890.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:32 Heat of formation + Delta-G solvation = -156.032097 kcal Electronic energy + Delta-G solvation = -32264.037877 eV Core-core repulsion = 27998.476464 eV Total energy + Delta-G solvation = -4265.561413 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.01958 -39.55439 -38.18246 -36.93711 -36.83001 -34.87793 -33.49355 -32.97333 -31.93646 -30.11994 -29.89336 -27.07443 -26.86000 -25.22931 -24.96239 -22.92688 -22.47957 -21.94520 -20.31640 -19.37403 -18.66115 -17.75819 -17.51204 -17.09333 -16.67447 -16.25301 -16.17998 -15.53817 -15.10341 -14.99058 -14.61794 -14.49892 -14.31275 -14.16809 -13.83829 -13.73887 -13.40159 -13.30226 -12.90955 -12.75732 -12.67870 -12.32835 -12.15158 -12.02326 -11.94577 -11.50207 -11.41955 -11.15578 -11.10880 -10.97758 -10.66265 -10.59958 -10.47554 -10.42434 -10.34719 -10.14604 -10.03743 -9.34989 -9.25001 -8.94956 -8.75534 -8.54043 -7.99911 -6.10054 -4.18124 2.27952 2.29211 2.95496 3.26053 3.34126 3.35726 3.42323 3.57345 3.83077 4.34749 4.40502 4.53711 4.68232 4.76719 4.83239 4.95636 5.07468 5.13694 5.16379 5.17770 5.21525 5.27280 5.36522 5.38859 5.53120 5.56234 5.66514 5.80516 5.89216 5.92973 6.04248 6.11398 6.19218 6.25309 6.46154 6.51742 6.71706 6.83594 6.93397 6.98269 7.01888 7.04420 7.31749 7.47108 7.71600 7.80001 7.83686 7.97878 8.23802 8.42261 8.85551 9.48227 10.95662 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017120 B = 0.003322 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.156041 B = 8426.112673 C = 9055.176319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.077 3.923 3 H 0.120 0.880 4 C 0.075 3.925 5 N -0.598 5.598 6 C 0.522 3.478 7 O -0.522 6.522 8 C 0.507 3.493 9 O -0.508 6.508 10 N -0.586 5.586 11 C 0.107 3.893 12 C -0.132 4.132 13 C -0.112 4.112 14 C 0.042 3.958 15 H 0.030 0.970 16 C -0.521 4.521 17 H 0.060 0.940 18 C 0.064 3.936 19 N -0.882 5.882 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.110 3.890 25 C 0.085 3.915 26 C 0.072 3.928 27 H 0.077 0.923 28 C 0.088 3.912 29 O -0.564 6.564 30 O -0.362 6.362 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.265 0.735 43 H 0.049 0.951 44 H 0.125 0.875 45 H 0.082 0.918 46 H 0.103 0.897 47 H 0.063 0.937 48 H 0.057 0.943 49 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.673 -7.447 15.508 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.019 3.981 3 H 0.138 0.862 4 C -0.048 4.048 5 N -0.334 5.334 6 C 0.306 3.694 7 O -0.397 6.397 8 C 0.288 3.712 9 O -0.383 6.383 10 N -0.320 5.320 11 C -0.016 4.016 12 C -0.170 4.170 13 C -0.149 4.149 14 C 0.023 3.977 15 H 0.048 0.952 16 C -0.559 4.559 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.519 5.519 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.009 4.009 25 C -0.037 4.037 26 C 0.014 3.986 27 H 0.095 0.905 28 C 0.010 3.990 29 O -0.369 6.369 30 O -0.280 6.280 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.143 0.857 45 H 0.100 0.900 46 H 0.122 0.878 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 6.628 -7.279 15.216 18.123 hybrid contribution -0.108 0.013 -0.644 0.654 sum 6.519 -7.266 14.572 17.539 Atomic orbital electron populations 1.22372 0.95144 1.03047 1.03487 1.22601 0.94787 0.96671 0.84082 0.86247 1.22637 1.01810 0.79721 1.00624 1.48055 1.57923 1.11552 1.15875 1.20838 0.76600 0.87593 0.84378 1.90746 1.55001 1.13845 1.80112 1.19892 0.86001 0.81375 0.83930 1.90831 1.20835 1.44439 1.82207 1.48620 1.20487 1.45806 1.17075 1.21628 0.84356 0.94327 1.01290 1.21877 0.96515 0.98464 1.00174 1.21650 1.00039 0.98529 0.94732 1.18970 0.88927 0.92282 0.97485 0.95177 1.21058 1.10022 1.26226 0.98603 0.92204 1.25045 0.96186 0.96391 0.96331 1.69851 1.14981 1.38512 1.28578 0.86563 0.78473 0.79452 0.83358 1.20612 1.21164 1.19909 1.22516 1.03699 0.91496 0.83219 1.22195 1.01417 0.97334 0.82801 1.22452 0.99789 0.83545 0.92850 0.90547 1.22043 0.97408 0.94344 0.85234 1.86549 1.72109 1.61748 1.16467 1.88058 1.71851 1.24576 1.43552 0.92259 0.91555 0.90315 0.89639 0.87801 0.91615 0.91172 0.91824 0.92120 0.92953 0.92678 0.92542 0.93302 0.85738 0.90001 0.87848 0.91861 0.92443 0.77350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 8.81 37.16 0.33 -2.14 16 2 C 0.08 0.95 3.92 -26.58 -0.10 0.85 16 3 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 4 C 0.07 1.00 5.94 -3.54 -0.02 0.98 16 5 N -0.60 -8.44 2.54 -172.79 -0.44 -8.88 16 6 C 0.52 9.17 5.49 -11.59 -0.06 9.11 16 7 O -0.52 -10.00 16.58 5.49 0.09 -9.90 16 8 C 0.51 10.31 5.52 -11.58 -0.06 10.25 16 9 O -0.51 -12.06 16.53 5.50 0.09 -11.97 16 10 N -0.59 -11.50 2.98 -173.55 -0.52 -12.01 16 11 C 0.11 1.71 6.33 -3.94 -0.02 1.68 16 12 C -0.13 -1.98 6.06 -26.83 -0.16 -2.14 16 13 C -0.11 -2.06 5.11 -26.68 -0.14 -2.20 16 14 C 0.04 0.97 2.25 -91.65 -0.21 0.77 16 15 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 16 C -0.52 -13.33 8.56 -34.44 -0.29 -13.63 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 19 N -0.88 -24.31 11.39 55.43 0.63 -23.68 16 20 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 C 0.11 2.53 5.39 -3.71 -0.02 2.51 16 25 C 0.09 0.96 5.91 -3.53 -0.02 0.93 16 26 C 0.07 0.81 2.67 -26.58 -0.07 0.74 16 27 H 0.08 0.96 6.25 -51.93 -0.32 0.64 16 28 C 0.09 0.73 6.71 37.16 0.25 0.98 16 29 O -0.56 -5.27 13.63 -39.71 -0.54 -5.81 16 30 O -0.36 -4.56 10.19 -39.71 -0.40 -4.97 16 31 H 0.06 0.87 6.11 -51.93 -0.32 0.55 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.10 1.66 6.39 -51.93 -0.33 1.32 16 36 H 0.07 0.97 6.30 -51.93 -0.33 0.64 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.12 3.33 5.16 -51.93 -0.27 3.06 16 45 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 46 H 0.10 1.17 7.12 -51.93 -0.37 0.80 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.38 1.59 9.12 45.56 0.42 2.00 16 LS Contribution 385.19 15.07 5.80 5.80 Total: -1.00 -32.33 385.19 -8.00 -40.33 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.98 Total: 5.34 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -0.71 Total: 10.25 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -0.32 Total: -44.58 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.76 Total: -32.65 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.33 -8.00 -40.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327394890.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.702 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds