Wall clock time and date at job start Sat Apr 11 2020 06:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.51052 * 2 1 4 4 C 1.53289 * 109.51510 * 239.89420 * 2 1 3 5 5 N 1.47150 * 108.38795 * 292.33075 * 4 2 1 6 6 C 1.34777 * 120.98287 * 129.43913 * 5 4 2 7 7 O 1.21355 * 119.99474 * 174.98912 * 6 5 4 8 8 C 1.49445 * 120.00199 * 354.98594 * 6 5 4 9 9 O 1.21349 * 120.00271 * 274.64334 * 8 6 5 10 10 N 1.34783 * 119.99570 * 94.63991 * 8 6 5 11 11 C 1.46919 * 120.63222 * 4.76817 * 10 8 6 12 12 C 1.52759 * 109.01042 * 233.58201 * 11 10 8 13 13 C 1.53048 * 109.38276 * 305.58677 * 12 11 10 14 14 C 1.53044 * 109.53524 * 61.23580 * 13 12 11 15 15 H 1.09005 * 109.49531 * 58.58881 * 14 13 12 16 16 C 1.50696 * 109.49700 * 178.68482 * 14 13 12 17 17 H 1.08000 * 120.00270 * 359.84106 * 16 14 13 18 18 C 1.37880 * 120.00134 * 179.84361 * 16 14 13 19 19 N 1.31520 * 119.99915 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 120.00152 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47204 * 89.99747 * 20 18 16 22 22 H 1.48505 * 109.47237 * 209.99622 * 20 18 16 23 23 H 1.48493 * 109.47224 * 329.99707 * 20 18 16 24 24 C 1.46929 * 120.62833 * 185.04259 * 10 8 6 25 25 C 1.47150 * 118.03434 * 309.46428 * 5 4 2 26 26 C 1.53297 * 108.38613 * 50.53309 * 25 5 4 27 27 H 1.08998 * 109.51264 * 67.62309 * 26 25 5 28 28 C 1.52998 * 109.51275 * 187.77624 * 26 25 5 29 29 O 1.42903 * 109.47324 * 184.99869 * 28 26 25 30 30 O 1.42960 * 109.22068 * 307.69901 * 26 25 5 31 31 H 1.08999 * 109.47009 * 180.10110 * 1 2 3 32 32 H 1.09004 * 109.47344 * 300.10140 * 1 2 3 33 33 H 1.08997 * 109.47192 * 60.10173 * 1 2 3 34 34 H 1.08998 * 109.68285 * 172.60446 * 4 2 1 35 35 H 1.09004 * 109.67730 * 52.04888 * 4 2 1 36 36 H 1.08998 * 109.58860 * 353.41345 * 11 10 8 37 37 H 1.09001 * 109.59164 * 113.84151 * 11 10 8 38 38 H 1.08998 * 109.56936 * 185.55520 * 12 11 10 39 39 H 1.09002 * 109.38551 * 65.50946 * 12 11 10 40 40 H 1.09000 * 109.46224 * 301.22453 * 13 12 11 41 41 H 1.09000 * 109.46093 * 181.25471 * 13 12 11 42 42 H 0.96999 * 119.99753 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.58712 * 246.15803 * 24 10 8 44 44 H 1.09001 * 109.58397 * 6.44324 * 24 10 8 45 45 H 1.09010 * 109.67906 * 290.81094 * 25 5 4 46 46 H 1.08995 * 109.71435 * 170.27732 * 25 5 4 47 47 H 1.08998 * 109.47271 * 305.00155 * 28 26 25 48 48 H 1.09003 * 109.47033 * 64.99913 * 28 26 25 49 49 H 0.96694 * 114.00227 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7247 -1.2499 5 7 1.6971 -2.1505 -1.1339 6 6 1.0720 -2.7970 -2.1377 7 8 0.8772 -3.9924 -2.0611 8 6 0.6187 -2.0419 -3.3451 9 8 -0.4586 -1.4833 -3.3424 10 7 1.4066 -1.9812 -4.4369 11 6 2.6653 -2.7368 -4.4948 12 6 3.8043 -1.7804 -4.8434 13 6 3.4612 -1.0305 -6.1327 14 6 2.1861 -0.2103 -5.9237 15 1 2.3345 0.4897 -5.1014 16 6 1.8670 0.5530 -7.1833 17 1 2.5106 0.4645 -8.0461 18 6 0.7534 1.3644 -7.2344 19 7 -0.0306 1.4719 -6.1839 20 14 0.3583 2.3110 -8.7954 21 1 -0.5112 1.4833 -9.6696 22 1 -0.3468 3.5703 -8.4457 23 1 1.6186 2.6321 -9.5121 24 6 1.0261 -1.1533 -5.5896 25 6 2.0542 -2.8494 0.1109 26 6 1.5416 -2.0212 1.2946 27 1 0.4516 -2.0293 1.2998 28 6 2.0643 -2.6201 2.6018 29 8 1.4933 -1.9195 3.7087 30 8 2.0085 -0.6762 1.1653 31 1 -0.3633 -1.0277 0.0018 32 1 -0.3634 0.5154 0.8891 33 1 -0.3633 0.5122 -0.8909 34 1 3.1240 -0.6135 -1.3214 35 1 1.5697 -0.3039 -2.1376 36 1 2.8601 -3.1970 -3.5261 37 1 2.5931 -3.5091 -5.2606 38 1 4.7252 -2.3459 -4.9856 39 1 3.9379 -1.0657 -4.0314 40 1 3.3038 -1.7471 -6.9388 41 1 4.2829 -0.3639 -6.3947 42 1 -0.8142 2.0424 -6.2199 43 1 0.8174 -1.7938 -6.4465 44 1 0.1381 -0.5709 -5.3438 45 1 3.1375 -2.9520 0.1764 46 1 1.5906 -3.8357 0.1248 47 1 1.7868 -3.6727 2.6558 48 1 3.1500 -2.5285 2.6349 49 1 1.7813 -2.2463 4.5720 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327394890.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:31 Heat of formation + Delta-G solvation = -180.447326 kcal Electronic energy + Delta-G solvation = -32265.096601 eV Core-core repulsion = 27998.476464 eV Total energy + Delta-G solvation = -4266.620136 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.33410 -40.82746 -39.56093 -38.46451 -37.63705 -36.02928 -35.34086 -33.92266 -33.55689 -31.70578 -31.04074 -28.35225 -27.95499 -27.01334 -26.31261 -23.91998 -23.83025 -23.47831 -21.54712 -20.75703 -19.97932 -19.04013 -18.50442 -18.33627 -18.02749 -17.90527 -17.43020 -16.69967 -16.55578 -16.17065 -16.10134 -15.76778 -15.62041 -15.28374 -15.11993 -15.10576 -14.63987 -14.47821 -14.42457 -14.26592 -13.96845 -13.63943 -13.60824 -13.22666 -13.09036 -12.90151 -12.75985 -12.65208 -12.51353 -12.33087 -12.25936 -12.22658 -11.85230 -11.69222 -11.64676 -11.31944 -11.12323 -10.97196 -10.89813 -10.62754 -10.51052 -9.86414 -9.65938 -8.11563 -6.26413 0.87060 0.92236 1.41758 1.43323 1.44244 1.53251 2.15053 2.43122 2.54486 3.00041 3.13367 3.18653 3.51759 3.76510 3.83116 3.88257 3.93753 4.07321 4.14762 4.20465 4.23808 4.27079 4.31023 4.46387 4.51104 4.52062 4.56141 4.66071 4.72435 4.73655 4.77406 4.80600 4.88598 5.01249 5.06829 5.11549 5.17495 5.22658 5.30872 5.40395 5.59576 5.72736 5.86580 5.94508 6.03199 6.26966 6.32041 6.46763 6.77444 6.87711 6.95080 7.43579 8.91974 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017120 B = 0.003322 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.156041 B = 8426.112673 C = 9055.176319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.082 3.918 3 H 0.138 0.862 4 C 0.075 3.925 5 N -0.587 5.587 6 C 0.530 3.470 7 O -0.540 6.540 8 C 0.500 3.500 9 O -0.556 6.556 10 N -0.585 5.585 11 C 0.102 3.898 12 C -0.121 4.121 13 C -0.106 4.106 14 C 0.043 3.957 15 H 0.001 0.999 16 C -0.532 4.532 17 H 0.063 0.937 18 C 0.014 3.986 19 N -0.912 5.912 20 Si 0.953 3.047 21 H -0.279 1.279 22 H -0.288 1.288 23 H -0.263 1.263 24 C 0.123 3.877 25 C 0.085 3.915 26 C 0.068 3.932 27 H 0.055 0.945 28 C 0.091 3.909 29 O -0.590 6.590 30 O -0.364 6.364 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.114 0.886 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.260 0.740 43 H 0.040 0.960 44 H 0.082 0.918 45 H 0.115 0.885 46 H 0.105 0.895 47 H 0.088 0.912 48 H 0.075 0.925 49 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.677 -8.628 16.590 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.023 3.977 3 H 0.156 0.844 4 C -0.047 4.047 5 N -0.321 5.321 6 C 0.313 3.687 7 O -0.417 6.417 8 C 0.283 3.717 9 O -0.435 6.435 10 N -0.318 5.318 11 C -0.019 4.019 12 C -0.159 4.159 13 C -0.144 4.144 14 C 0.024 3.976 15 H 0.019 0.981 16 C -0.571 4.571 17 H 0.081 0.919 18 C -0.186 4.186 19 N -0.551 5.551 20 Si 0.779 3.221 21 H -0.205 1.205 22 H -0.214 1.214 23 H -0.187 1.187 24 C 0.002 3.998 25 C -0.036 4.036 26 C 0.009 3.991 27 H 0.073 0.927 28 C 0.013 3.987 29 O -0.399 6.399 30 O -0.282 6.282 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.132 0.868 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.124 0.876 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.101 0.899 45 H 0.133 0.867 46 H 0.123 0.877 47 H 0.106 0.894 48 H 0.094 0.906 49 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 9.700 -8.475 16.336 20.803 hybrid contribution -1.051 0.389 -0.923 1.452 sum 8.649 -8.086 15.412 19.435 Atomic orbital electron populations 1.22305 0.96540 1.01795 1.02861 1.22587 0.93578 0.97623 0.83871 0.84413 1.22713 1.03105 0.79097 0.99795 1.48066 1.56182 1.11890 1.15936 1.20137 0.77278 0.87049 0.84204 1.90738 1.56316 1.14208 1.80482 1.20496 0.85409 0.80869 0.84954 1.90796 1.22953 1.46559 1.83143 1.48613 1.21809 1.45371 1.15971 1.21935 0.82659 0.94478 1.02851 1.21825 0.97620 0.98312 0.98131 1.21539 0.97559 0.98371 0.96919 1.18889 0.91182 0.92194 0.95328 0.98069 1.21485 1.09775 1.26186 0.99649 0.91916 1.25805 0.96319 0.97538 0.98917 1.70029 1.15320 1.39264 1.30463 0.85631 0.78455 0.77965 0.80071 1.20519 1.21409 1.18732 1.21992 1.02384 0.91421 0.84001 1.22474 1.03335 0.96926 0.80857 1.22606 0.98818 0.83013 0.94647 0.92722 1.22089 0.98161 0.95004 0.83422 1.86483 1.72795 1.62650 1.17987 1.88070 1.71656 1.25386 1.43116 0.93851 0.90562 0.92445 0.86799 0.90948 0.89743 0.89918 0.87568 0.91855 0.92611 0.92091 0.93105 0.94188 0.89936 0.86747 0.87667 0.89432 0.90641 0.74853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.97 8.81 71.98 0.63 -4.33 16 2 C 0.08 1.96 3.92 30.69 0.12 2.08 16 3 H 0.14 2.81 8.14 -2.39 -0.02 2.79 16 4 C 0.08 1.94 5.94 86.35 0.51 2.46 16 5 N -0.59 -15.83 2.54 -818.94 -2.08 -17.91 16 6 C 0.53 18.49 5.49 87.27 0.48 18.97 16 7 O -0.54 -20.29 16.58 -3.26 -0.05 -20.34 16 8 C 0.50 21.05 5.52 87.27 0.48 21.53 16 9 O -0.56 -28.23 16.53 -3.24 -0.05 -28.29 16 10 N -0.59 -23.30 2.98 -821.34 -2.45 -25.75 16 11 C 0.10 3.04 6.33 86.22 0.55 3.59 16 12 C -0.12 -3.25 6.06 30.53 0.19 -3.07 16 13 C -0.11 -3.74 5.11 30.62 0.16 -3.59 16 14 C 0.04 2.02 2.25 -11.46 -0.03 1.99 16 15 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 16 C -0.53 -27.70 8.56 25.60 0.22 -27.48 16 17 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 18 C 0.01 0.75 5.30 84.65 0.45 1.20 16 19 N -0.91 -52.70 11.39 21.45 0.24 -52.46 16 20 Si 0.95 42.82 29.54 68.60 2.03 44.85 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 24 C 0.12 5.89 5.39 86.36 0.47 6.36 16 25 C 0.09 1.68 5.91 86.35 0.51 2.19 16 26 C 0.07 1.37 2.67 30.69 0.08 1.45 16 27 H 0.05 1.35 6.25 -2.39 -0.01 1.34 16 28 C 0.09 1.22 6.71 71.98 0.48 1.70 16 29 O -0.59 -9.60 13.63 -144.70 -1.97 -11.57 16 30 O -0.36 -8.40 10.19 -144.70 -1.48 -9.87 16 31 H 0.04 1.33 6.11 -2.39 -0.01 1.31 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.07 2.39 6.39 -2.39 -0.02 2.38 16 36 H 0.08 2.24 6.30 -2.39 -0.02 2.22 16 37 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 43 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.08 4.71 5.16 -2.39 -0.01 4.70 16 45 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 46 H 0.11 2.11 7.12 -2.39 -0.02 2.09 16 47 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.40 2.30 9.12 -74.06 -0.68 1.62 16 Total: -1.00 -74.17 385.19 -0.22 -74.39 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.29 Total: 21.89 kcal Atomic # 6 Polarization: 19.76 SS G_CDS: 5.30 Total: 25.06 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -4.28 Total: -96.12 kcal Atomic # 8 Polarization: -66.52 SS G_CDS: -3.55 Total: -70.07 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -74.17 -0.22 -74.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327394890.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.055 kcal (2) G-P(sol) polarization free energy of solvation -74.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds