Wall clock time and date at job start Sat Apr 11 2020 06:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.30381 * 2 1 4 4 C 1.54385 * 110.33910 * 237.82232 * 2 1 3 5 5 N 1.48147 * 104.62256 * 264.99783 * 4 2 1 6 6 C 1.34775 * 127.84275 * 140.39619 * 5 4 2 7 7 O 1.21348 * 120.00285 * 179.97438 * 6 5 4 8 8 C 1.49453 * 119.99529 * 359.97438 * 6 5 4 9 9 O 1.21350 * 120.00334 * 359.97438 * 8 6 5 10 10 N 1.34777 * 119.99672 * 180.02562 * 8 6 5 11 11 C 1.47423 * 125.64846 * 0.02562 * 10 8 6 12 12 C 1.54910 * 104.83346 * 204.09773 * 11 10 8 13 13 C 1.55160 * 101.58129 * 322.98893 * 12 11 10 14 14 O 1.42907 * 110.72073 * 276.96714 * 13 12 11 15 15 C 1.50697 * 110.72297 * 153.86650 * 13 12 11 16 16 H 1.07996 * 120.00011 * 359.97438 * 15 13 12 17 17 C 1.37875 * 120.00080 * 180.02562 * 15 13 12 18 18 N 1.31517 * 120.00000 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 120.00246 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46872 * 89.99736 * 19 17 15 21 21 H 1.48499 * 109.46960 * 209.99963 * 19 17 15 22 22 H 1.48500 * 109.46941 * 330.00405 * 19 17 15 23 23 C 1.47025 * 125.64970 * 179.71538 * 10 8 6 24 24 C 1.48152 * 104.32122 * 320.41586 * 5 4 2 25 25 C 1.54285 * 110.34332 * 122.29110 * 2 1 3 26 26 C 1.53002 * 110.34118 * 359.97438 * 25 2 1 27 27 C 1.53002 * 110.33971 * 237.74222 * 25 2 1 28 28 O 1.42905 * 109.46747 * 180.02562 * 27 25 2 29 29 H 1.08994 * 109.47357 * 180.72409 * 1 2 3 30 30 H 1.08998 * 109.46865 * 300.72170 * 1 2 3 31 31 H 1.08994 * 109.46919 * 60.71995 * 1 2 3 32 32 H 1.09003 * 110.41245 * 23.78534 * 4 2 1 33 33 H 1.09002 * 110.40396 * 146.09112 * 4 2 1 34 34 H 1.09003 * 110.36934 * 322.93469 * 11 10 8 35 35 H 1.08991 * 110.36970 * 85.14629 * 11 10 8 36 36 H 1.08996 * 111.00734 * 81.06030 * 12 11 10 37 37 H 1.08997 * 111.00583 * 204.88273 * 12 11 10 38 38 H 0.96699 * 113.99564 * 180.02562 * 14 13 12 39 39 H 0.97000 * 119.99993 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.88147 * 298.39279 * 23 10 8 41 41 H 1.09003 * 109.88064 * 59.55413 * 23 10 8 42 42 H 1.08992 * 110.40585 * 158.37086 * 24 5 4 43 43 H 1.08997 * 110.40679 * 280.80529 * 24 5 4 44 44 H 1.08999 * 109.47100 * 60.00294 * 26 25 2 45 45 H 1.08998 * 109.46928 * 180.02562 * 26 25 2 46 46 H 1.09001 * 109.47629 * 300.00123 * 26 25 2 47 47 H 1.09000 * 109.47074 * 299.99260 * 27 25 2 48 48 H 1.08995 * 109.47472 * 60.00029 * 27 25 2 49 49 H 0.96700 * 113.99679 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0667 -0.7709 -1.2252 5 7 2.3139 -2.1432 -0.7248 6 6 2.0769 -3.3093 -1.3577 7 8 2.3363 -4.3606 -0.8099 8 6 1.4948 -3.3075 -2.7342 9 8 1.2350 -2.2562 -3.2818 10 7 1.2574 -4.4736 -3.3669 11 6 1.5225 -5.8170 -2.8207 12 6 1.6842 -6.7260 -4.0645 13 6 0.6261 -6.1266 -5.0281 14 8 -0.6723 -6.6507 -4.7425 15 6 1.0018 -6.3906 -6.4635 16 1 1.9067 -6.9332 -6.6938 17 6 0.1907 -5.9386 -7.4827 18 7 -0.9111 -5.2774 -7.2022 19 14 0.6566 -6.2653 -9.2619 20 1 0.0662 -7.5558 -9.6992 21 1 0.1387 -5.1684 -10.1186 22 1 2.1352 -6.3314 -9.3822 23 6 0.6851 -4.6168 -4.7136 24 6 2.8802 -1.9429 0.6295 25 6 2.0664 -0.7728 1.2229 26 6 0.9062 -1.3051 2.0664 27 6 2.9693 0.1286 2.0675 28 8 3.4556 -0.6050 3.1933 29 1 -0.3634 -1.0275 0.0130 30 1 -0.3633 0.5250 0.8834 31 1 -0.3633 0.5026 -0.8963 32 1 1.3223 -0.7851 -2.0214 33 1 2.9938 -0.3213 -1.5809 34 1 2.4399 -5.8130 -2.2319 35 1 0.6830 -6.1512 -2.2111 36 1 2.6869 -6.6405 -4.4833 37 1 1.4509 -7.7631 -3.8236 38 1 -1.3700 -6.3078 -5.3176 39 1 -1.4815 -4.9591 -7.9193 40 1 -0.3182 -4.1917 -4.7371 41 1 1.3206 -4.1129 -5.4419 42 1 2.7495 -2.8413 1.2327 43 1 3.9354 -1.6776 0.5648 44 1 0.2954 -1.9757 1.4620 45 1 1.3006 -1.8476 2.9256 46 1 0.2960 -0.4709 2.4127 47 1 3.8113 0.4675 1.4640 48 1 2.3999 0.9911 2.4138 49 1 4.0357 -0.0945 3.7746 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327748896.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:52 Heat of formation + Delta-G solvation = -151.467565 kcal Electronic energy + Delta-G solvation = -31483.059379 eV Core-core repulsion = 27217.695900 eV Total energy + Delta-G solvation = -4265.363480 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.82633 -39.53761 -38.02692 -37.23204 -36.62253 -34.42430 -33.38286 -32.18822 -31.23554 -30.15272 -28.11563 -27.91027 -26.80932 -25.83212 -25.43526 -23.42745 -22.18044 -21.36976 -19.61118 -19.23646 -18.77516 -17.61650 -17.23152 -16.81641 -16.50968 -16.39906 -15.45651 -15.37723 -15.29056 -14.98886 -14.54897 -14.34374 -13.82433 -13.77671 -13.49910 -13.31741 -13.05029 -12.99648 -12.87139 -12.78818 -12.35278 -12.29082 -12.06650 -11.76684 -11.71479 -11.57365 -11.51564 -11.12533 -11.08428 -10.85306 -10.84071 -10.66453 -10.60921 -10.51566 -10.47498 -10.31724 -10.15029 -9.34618 -9.02308 -8.80913 -8.66783 -8.34723 -8.01172 -6.32245 -4.40652 1.79791 2.50027 3.19720 3.27174 3.30121 3.57976 3.66370 3.84639 4.24557 4.26063 4.32958 4.53404 4.69188 4.85619 4.95928 4.96458 4.97592 5.11565 5.21839 5.30434 5.46545 5.51323 5.60608 5.63121 5.67598 5.70298 5.75327 5.84523 5.90152 5.92274 5.95893 6.02976 6.07200 6.15703 6.28790 6.33416 6.51249 6.76921 6.81006 6.84601 7.19094 7.26171 7.29537 7.35960 7.70747 7.79937 7.99453 8.04328 8.45026 8.63149 9.28481 9.42102 10.75557 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023692 B = 0.002659 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.565152 B =10528.215280 C =10948.862144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.087 0.913 4 C 0.090 3.910 5 N -0.599 5.599 6 C 0.531 3.469 7 O -0.518 6.518 8 C 0.511 3.489 9 O -0.535 6.535 10 N -0.574 5.574 11 C 0.099 3.901 12 C -0.121 4.121 13 C 0.248 3.752 14 O -0.584 6.584 15 C -0.536 4.536 16 H 0.068 0.932 17 C 0.069 3.931 18 N -0.897 5.897 19 Si 0.905 3.095 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.099 3.901 24 C 0.121 3.879 25 C -0.072 4.072 26 C -0.133 4.133 27 C 0.092 3.908 28 O -0.569 6.569 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.120 0.880 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.386 0.614 39 H 0.271 0.729 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.049 0.951 48 H 0.050 0.950 49 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.974 12.554 17.016 21.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.105 0.895 4 C -0.032 4.032 5 N -0.334 5.334 6 C 0.315 3.685 7 O -0.394 6.394 8 C 0.293 3.707 9 O -0.414 6.414 10 N -0.306 5.306 11 C -0.024 4.024 12 C -0.159 4.159 13 C 0.208 3.792 14 O -0.394 6.394 15 C -0.574 4.574 16 H 0.086 0.914 17 C -0.133 4.133 18 N -0.536 5.536 19 Si 0.733 3.267 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.022 4.022 24 C -0.002 4.002 25 C -0.073 4.073 26 C -0.190 4.190 27 C 0.014 3.986 28 O -0.374 6.374 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.138 0.862 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.238 0.762 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.068 0.932 49 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 5.768 11.760 17.066 21.513 hybrid contribution 0.253 0.852 -1.173 1.472 sum 6.021 12.612 15.893 21.164 Atomic orbital electron populations 1.21923 0.93831 1.02594 1.01784 1.22170 0.97073 0.99065 0.93394 0.89509 1.22965 1.02589 0.80166 0.97515 1.48673 1.61699 1.05854 1.17171 1.20037 0.79009 0.82514 0.86967 1.90707 1.51584 1.29866 1.67234 1.19485 0.81199 0.83938 0.86064 1.90609 1.53627 1.30045 1.67125 1.48681 1.58075 1.05343 1.18468 1.22644 1.01761 0.81125 0.96838 1.22826 0.99623 0.98918 0.94504 1.19500 0.81528 0.85796 0.92411 1.86099 1.19037 1.71626 1.62680 1.21537 1.09050 1.36829 0.89980 0.91363 1.25089 0.94644 0.93522 1.00074 1.69573 1.13172 1.37186 1.33700 0.86370 0.78946 0.78037 0.83387 1.20331 1.20986 1.19682 1.23267 0.98185 1.01883 0.78856 1.22398 0.96552 0.98694 0.82519 1.21567 0.95883 0.95249 0.94592 1.21850 0.96708 1.01033 0.99444 1.22215 0.96083 0.93099 0.87234 1.86509 1.69246 1.42725 1.38932 0.92016 0.92304 0.92124 0.86250 0.91046 0.89542 0.91365 0.90526 0.90268 0.76235 0.91873 0.91204 0.90985 0.89394 0.90886 0.92180 0.91845 0.92309 0.93320 0.93200 0.77479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 7.93 37.16 0.29 -1.06 16 2 C -0.10 -0.89 3.30 -89.22 -0.29 -1.18 16 3 H 0.09 0.60 7.72 -51.93 -0.40 0.20 16 4 C 0.09 1.09 6.15 -2.41 -0.01 1.08 16 5 N -0.60 -8.64 3.32 -169.81 -0.56 -9.21 16 6 C 0.53 9.51 7.95 -11.58 -0.09 9.42 16 7 O -0.52 -9.99 14.05 5.50 0.08 -9.91 16 8 C 0.51 10.37 7.89 -11.58 -0.09 10.28 16 9 O -0.53 -11.35 14.10 5.50 0.08 -11.27 16 10 N -0.57 -12.33 3.33 -171.02 -0.57 -12.90 16 11 C 0.10 1.96 6.05 -2.53 -0.02 1.95 16 12 C -0.12 -2.52 6.23 -24.58 -0.15 -2.67 16 13 C 0.25 6.05 0.86 -89.93 -0.08 5.97 16 14 O -0.58 -14.88 13.09 -35.23 -0.46 -15.34 16 15 C -0.54 -13.92 8.11 -34.44 -0.28 -14.20 16 16 H 0.07 1.75 7.76 -52.49 -0.41 1.34 16 17 C 0.07 1.80 5.28 -17.82 -0.09 1.70 16 18 N -0.90 -23.52 10.97 55.43 0.61 -22.91 16 19 Si 0.91 20.26 29.54 -169.99 -5.02 15.24 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 C 0.10 2.38 5.54 -3.06 -0.02 2.36 16 24 C 0.12 1.43 5.94 -2.41 -0.01 1.41 16 25 C -0.07 -0.66 0.84 -153.11 -0.13 -0.79 16 26 C -0.13 -1.29 7.12 37.16 0.26 -1.03 16 27 C 0.09 0.63 5.64 37.16 0.21 0.84 16 28 O -0.57 -4.23 12.71 -35.23 -0.45 -4.68 16 29 H 0.06 0.70 6.61 -51.93 -0.34 0.36 16 30 H 0.06 0.46 6.98 -51.93 -0.36 0.09 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.12 1.74 5.20 -51.93 -0.27 1.47 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.64 6.16 -51.93 -0.32 1.32 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 36 H 0.08 1.53 8.02 -51.93 -0.42 1.11 16 37 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 38 H 0.39 10.04 6.98 45.56 0.32 10.35 16 39 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 40 H 0.07 1.80 8.07 -51.93 -0.42 1.38 16 41 H 0.07 1.84 7.81 -51.93 -0.41 1.43 16 42 H 0.09 1.17 7.60 -51.93 -0.39 0.78 16 43 H 0.07 0.79 7.83 -51.93 -0.41 0.38 16 44 H 0.06 0.68 6.72 -51.93 -0.35 0.33 16 45 H 0.06 0.65 7.62 -51.93 -0.40 0.26 16 46 H 0.06 0.49 6.89 -51.93 -0.36 0.13 16 47 H 0.05 0.29 8.10 -51.93 -0.42 -0.13 16 48 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.38 1.13 9.12 45.56 0.42 1.54 16 LS Contribution 381.44 15.07 5.75 5.75 Total: -1.00 -30.05 381.44 -7.24 -37.28 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -6.18 Total: 13.88 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: -0.50 Total: 14.08 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -0.52 Total: -45.02 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -0.75 Total: -41.21 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.05 -7.24 -37.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327748896.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.183 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds