Wall clock time and date at job start Sat Apr 11 2020 06:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.30304 * 2 1 4 4 C 1.54386 * 110.34320 * 237.82646 * 2 1 3 5 5 N 1.48145 * 104.61844 * 217.15535 * 4 2 1 6 6 C 1.34777 * 127.83675 * 219.58232 * 5 4 2 7 7 O 1.21343 * 120.00084 * 180.02562 * 6 5 4 8 8 C 1.49454 * 120.00164 * 0.03100 * 6 5 4 9 9 O 1.21353 * 119.99759 * 359.97438 * 8 6 5 10 10 N 1.34773 * 120.00135 * 180.27489 * 8 6 5 11 11 C 1.47424 * 125.64844 * 359.41085 * 10 8 6 12 12 C 1.55128 * 104.72381 * 155.81991 * 11 10 8 13 13 C 1.55153 * 101.48516 * 37.29946 * 12 11 10 14 14 O 1.42900 * 110.72307 * 82.69616 * 13 12 11 15 15 C 1.50701 * 110.71920 * 205.96951 * 13 12 11 16 16 H 1.07997 * 119.99925 * 354.97139 * 15 13 12 17 17 C 1.37874 * 119.99873 * 174.97056 * 15 13 12 18 18 N 1.31517 * 120.00212 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99885 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47128 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47071 * 120.00434 * 19 17 15 22 22 H 1.48494 * 109.47243 * 240.00287 * 19 17 15 23 23 C 1.47023 * 125.65268 * 179.72674 * 10 8 6 24 24 C 1.48136 * 104.32163 * 39.84885 * 5 4 2 25 25 C 1.54285 * 110.43346 * 122.23739 * 2 1 3 26 26 C 1.53001 * 110.34119 * 237.89300 * 25 2 1 27 27 C 1.52998 * 110.34243 * 0.04640 * 25 2 1 28 28 O 1.42900 * 109.47145 * 180.02562 * 27 25 2 29 29 H 1.08997 * 109.46953 * 180.72057 * 1 2 3 30 30 H 1.08995 * 109.46909 * 300.71686 * 1 2 3 31 31 H 1.08997 * 109.46997 * 60.71799 * 1 2 3 32 32 H 1.09007 * 110.40675 * 98.36871 * 4 2 1 33 33 H 1.08999 * 110.40734 * 335.94574 * 4 2 1 34 34 H 1.09007 * 110.36548 * 274.75365 * 11 10 8 35 35 H 1.09004 * 110.36793 * 37.07090 * 11 10 8 36 36 H 1.08994 * 111.19165 * 279.19208 * 12 11 10 37 37 H 1.09009 * 110.93883 * 155.29088 * 12 11 10 38 38 H 0.96699 * 114.00086 * 185.02968 * 14 13 12 39 39 H 0.96997 * 119.99794 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.87466 * 300.43733 * 23 10 8 41 41 H 1.09000 * 109.88345 * 61.59347 * 23 10 8 42 42 H 1.08994 * 110.41217 * 78.94066 * 24 5 4 43 43 H 1.09005 * 110.40586 * 201.36922 * 24 5 4 44 44 H 1.08997 * 109.47498 * 59.99803 * 26 25 2 45 45 H 1.09003 * 109.47135 * 180.02562 * 26 25 2 46 46 H 1.09004 * 109.46880 * 299.99820 * 26 25 2 47 47 H 1.09003 * 109.46748 * 299.99640 * 27 25 2 48 48 H 1.08998 * 109.47517 * 59.99907 * 27 25 2 49 49 H 0.96694 * 113.99816 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7708 -1.2253 5 7 3.2679 -1.4788 -0.7248 6 6 4.4436 -1.6616 -1.3579 7 8 5.3396 -2.2695 -0.8102 8 6 4.6438 -1.1154 -2.7346 9 8 3.7476 -0.5078 -3.2825 10 7 5.8175 -1.3030 -3.3699 11 6 6.9871 -2.0138 -2.8220 12 6 7.7770 -2.4926 -4.0683 13 6 7.5823 -1.2956 -5.0361 14 8 8.5252 -0.2593 -4.7547 15 6 7.6945 -1.7455 -6.4699 16 1 7.9666 -2.7659 -6.6960 17 6 7.4498 -0.8545 -7.4932 18 7 7.1189 0.3883 -7.2179 19 14 7.5895 -1.4120 -9.2706 20 1 7.9734 -2.8460 -9.3108 21 1 6.2818 -1.2308 -9.9505 22 1 8.6239 -0.6026 -9.9634 23 6 6.1460 -0.8270 -4.7216 24 6 2.8814 -1.9460 0.6268 25 6 2.0686 -0.7712 1.2229 26 6 2.9688 0.1328 2.0675 27 6 0.9100 -1.3052 2.0675 28 8 1.4292 -2.0149 3.1939 29 1 -0.3633 -1.0276 0.0129 30 1 -0.3633 0.5249 0.8835 31 1 -0.3633 0.5026 -0.8963 32 1 2.3383 -0.0775 -2.0214 33 1 1.3242 -1.4857 -1.5797 34 1 7.5952 -1.3372 -2.2214 35 1 6.6667 -2.8679 -2.2253 36 1 7.3454 -3.4038 -4.4822 37 1 8.8312 -2.6352 -3.8303 38 1 8.3970 0.5424 -5.2799 39 1 6.9464 1.0150 -7.9379 40 1 5.4502 -1.2538 -5.4440 41 1 6.0956 0.2614 -4.7538 42 1 2.2642 -2.8417 0.5573 43 1 3.7683 -2.1405 1.2298 44 1 2.3970 0.9937 2.4138 45 1 3.3415 -0.4256 2.9263 46 1 3.8098 0.4742 1.4639 47 1 0.2987 -0.4719 2.4138 48 1 0.2999 -1.9772 1.4639 49 1 0.7491 -2.3817 3.7751 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327748897.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:55 Heat of formation + Delta-G solvation = -151.794356 kcal Electronic energy + Delta-G solvation = -31356.802530 eV Core-core repulsion = 27091.424879 eV Total energy + Delta-G solvation = -4265.377650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.80571 -39.55864 -38.05633 -37.23224 -36.54241 -34.40086 -33.37389 -32.25366 -31.57203 -30.14300 -27.96953 -27.37759 -27.31839 -25.73168 -25.42446 -23.45985 -22.30459 -21.40969 -19.63112 -19.14923 -18.71527 -17.79398 -17.18662 -16.75116 -16.58885 -16.19135 -15.70091 -15.40473 -15.20385 -15.02932 -14.50825 -14.17097 -13.98595 -13.64616 -13.41246 -13.30354 -13.01680 -12.97988 -12.94822 -12.79864 -12.51246 -12.37699 -12.21337 -11.88240 -11.73815 -11.73334 -11.51142 -11.09385 -11.05318 -11.01597 -10.80498 -10.72333 -10.61306 -10.47887 -10.45844 -10.18163 -10.15198 -9.32068 -9.01505 -8.82583 -8.67732 -8.34255 -8.00756 -6.30851 -4.39168 1.79713 2.49760 3.19179 3.28097 3.31958 3.58053 3.67533 3.86687 4.24236 4.25566 4.30703 4.49598 4.68979 4.83506 4.90953 4.97578 5.01082 5.10192 5.15305 5.24812 5.41848 5.46908 5.50885 5.56085 5.68722 5.72084 5.73706 5.81385 5.84214 5.89067 5.93238 6.00870 6.06322 6.10154 6.21394 6.31873 6.52153 6.76539 6.82551 6.85085 7.19130 7.28163 7.29535 7.36126 7.70742 7.80381 8.01599 8.04650 8.45365 8.65276 9.27472 9.36232 10.77010 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023137 B = 0.002634 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.868786 B =10627.380122 C =11226.161932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 H 0.088 0.912 4 C 0.092 3.908 5 N -0.601 5.601 6 C 0.531 3.469 7 O -0.518 6.518 8 C 0.511 3.489 9 O -0.535 6.535 10 N -0.575 5.575 11 C 0.098 3.902 12 C -0.120 4.120 13 C 0.247 3.753 14 O -0.583 6.583 15 C -0.535 4.535 16 H 0.068 0.932 17 C 0.070 3.930 18 N -0.895 5.895 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.281 1.281 23 C 0.102 3.898 24 C 0.121 3.879 25 C -0.072 4.072 26 C -0.132 4.132 27 C 0.089 3.911 28 O -0.571 6.571 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.382 0.618 39 H 0.270 0.730 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.056 0.944 47 H 0.052 0.948 48 H 0.051 0.949 49 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.225 -1.509 17.162 22.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 H 0.106 0.894 4 C -0.031 4.031 5 N -0.336 5.336 6 C 0.315 3.685 7 O -0.394 6.394 8 C 0.293 3.707 9 O -0.414 6.414 10 N -0.307 5.307 11 C -0.024 4.024 12 C -0.158 4.158 13 C 0.207 3.793 14 O -0.391 6.391 15 C -0.573 4.573 16 H 0.086 0.914 17 C -0.134 4.134 18 N -0.534 5.534 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.019 4.019 24 C -0.001 4.001 25 C -0.073 4.073 26 C -0.189 4.189 27 C 0.012 3.988 28 O -0.377 6.377 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.232 0.768 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -13.382 -1.627 17.177 21.836 hybrid contribution -0.881 0.133 -1.160 1.463 sum -14.264 -1.494 16.017 21.499 Atomic orbital electron populations 1.21920 0.94058 1.02219 1.02422 1.22246 0.96188 1.00032 0.93414 0.89381 1.22968 0.85960 0.96722 0.97413 1.48677 1.12798 1.54701 1.17380 1.20050 0.81046 0.80454 0.86957 1.90703 1.40626 1.40830 1.67204 1.19475 0.82875 0.82277 0.86062 1.90612 1.41100 1.42513 1.67184 1.48710 1.11812 1.51975 1.18158 1.22701 0.86198 0.96719 0.96830 1.22858 0.99941 0.98599 0.94424 1.19529 0.82992 0.84332 0.92483 1.86135 1.57084 1.28606 1.67297 1.21544 1.48132 0.97766 0.89900 0.91354 1.25088 0.93402 0.94844 1.00025 1.69706 1.46453 1.03789 1.33410 0.86337 0.77814 0.79013 0.83687 1.19561 1.20794 1.20724 1.23229 1.00373 0.99796 0.78530 1.22472 0.99462 0.95668 0.82536 1.21615 0.95341 0.95725 0.94573 1.21759 0.98961 0.98531 0.99683 1.22369 0.94507 0.94911 0.87063 1.86496 1.37833 1.74344 1.38979 0.92090 0.92070 0.91789 0.86416 0.90960 0.91343 0.89485 0.90423 0.90329 0.76836 0.92048 0.90885 0.91062 0.90873 0.89389 0.92561 0.91510 0.92472 0.92948 0.93039 0.77520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 7.93 37.16 0.29 -0.68 16 2 C -0.10 -0.91 3.30 -89.22 -0.29 -1.21 16 3 H 0.09 0.84 7.71 -51.93 -0.40 0.44 16 4 C 0.09 1.13 6.15 -2.41 -0.01 1.11 16 5 N -0.60 -8.76 3.31 -169.57 -0.56 -9.32 16 6 C 0.53 9.57 7.95 -11.58 -0.09 9.48 16 7 O -0.52 -10.01 14.04 5.50 0.08 -9.93 16 8 C 0.51 10.42 7.89 -11.59 -0.09 10.33 16 9 O -0.53 -11.45 14.10 5.49 0.08 -11.37 16 10 N -0.57 -12.37 3.32 -170.88 -0.57 -12.94 16 11 C 0.10 1.95 6.08 -2.41 -0.01 1.93 16 12 C -0.12 -2.51 6.24 -24.47 -0.15 -2.66 16 13 C 0.25 6.01 0.85 -89.94 -0.08 5.93 16 14 O -0.58 -14.68 13.08 -35.23 -0.46 -15.14 16 15 C -0.54 -13.93 8.12 -34.44 -0.28 -14.21 16 16 H 0.07 1.76 7.78 -52.49 -0.41 1.35 16 17 C 0.07 1.80 5.28 -17.82 -0.09 1.71 16 18 N -0.89 -23.50 10.98 55.43 0.61 -22.89 16 19 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 C 0.10 2.44 5.24 -3.06 -0.02 2.43 16 24 C 0.12 1.44 5.96 -2.20 -0.01 1.43 16 25 C -0.07 -0.67 0.84 -152.89 -0.13 -0.80 16 26 C -0.13 -1.30 8.13 37.16 0.30 -1.00 16 27 C 0.09 0.62 4.65 37.16 0.17 0.79 16 28 O -0.57 -4.31 12.71 -35.23 -0.45 -4.75 16 29 H 0.06 0.36 6.62 -51.93 -0.34 0.02 16 30 H 0.06 0.33 6.99 -51.93 -0.36 -0.03 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.12 1.73 5.48 -51.93 -0.28 1.44 16 33 H 0.07 0.80 7.86 -51.93 -0.41 0.39 16 34 H 0.07 1.37 8.14 -51.92 -0.42 0.94 16 35 H 0.09 1.65 6.13 -51.93 -0.32 1.33 16 36 H 0.08 1.55 8.04 -51.93 -0.42 1.13 16 37 H 0.08 1.55 8.14 -51.92 -0.42 1.13 16 38 H 0.38 9.73 7.47 45.56 0.34 10.07 16 39 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 40 H 0.07 1.88 7.81 -51.93 -0.41 1.48 16 41 H 0.07 1.84 7.92 -51.93 -0.41 1.43 16 42 H 0.07 0.80 7.84 -51.93 -0.41 0.39 16 43 H 0.09 1.18 7.62 -51.93 -0.40 0.78 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.69 7.62 -51.93 -0.40 0.29 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.05 0.30 6.89 -51.93 -0.36 -0.06 16 48 H 0.05 0.31 6.68 -51.93 -0.35 -0.03 16 49 H 0.38 1.16 9.12 45.56 0.42 1.57 16 LS Contribution 381.59 15.07 5.75 5.75 Total: -1.00 -30.21 381.59 -7.20 -37.41 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -6.16 Total: 13.30 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: -0.50 Total: 14.58 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -0.52 Total: -45.15 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -0.75 Total: -41.19 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.21 -7.20 -37.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327748897.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.387 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds