Wall clock time and date at job start Sat Apr 11 2020 06:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.30304 * 2 1 4 4 C 1.54386 * 110.34320 * 237.82646 * 2 1 3 5 5 N 1.48145 * 104.61844 * 217.15535 * 4 2 1 6 6 C 1.34777 * 127.83675 * 219.58232 * 5 4 2 7 7 O 1.21343 * 120.00084 * 180.02562 * 6 5 4 8 8 C 1.49454 * 120.00164 * 0.03100 * 6 5 4 9 9 O 1.21353 * 119.99759 * 359.97438 * 8 6 5 10 10 N 1.34773 * 120.00135 * 180.27489 * 8 6 5 11 11 C 1.47424 * 125.64844 * 359.41085 * 10 8 6 12 12 C 1.55128 * 104.72381 * 155.81991 * 11 10 8 13 13 C 1.55153 * 101.48516 * 37.29946 * 12 11 10 14 14 O 1.42900 * 110.72307 * 82.69616 * 13 12 11 15 15 C 1.50701 * 110.71920 * 205.96951 * 13 12 11 16 16 H 1.07997 * 119.99925 * 354.97139 * 15 13 12 17 17 C 1.37874 * 119.99873 * 174.97056 * 15 13 12 18 18 N 1.31517 * 120.00212 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99885 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47128 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47071 * 120.00434 * 19 17 15 22 22 H 1.48494 * 109.47243 * 240.00287 * 19 17 15 23 23 C 1.47023 * 125.65268 * 179.72674 * 10 8 6 24 24 C 1.48136 * 104.32163 * 39.84885 * 5 4 2 25 25 C 1.54285 * 110.43346 * 122.23739 * 2 1 3 26 26 C 1.53001 * 110.34119 * 237.89300 * 25 2 1 27 27 C 1.52998 * 110.34243 * 0.04640 * 25 2 1 28 28 O 1.42900 * 109.47145 * 180.02562 * 27 25 2 29 29 H 1.08997 * 109.46953 * 180.72057 * 1 2 3 30 30 H 1.08995 * 109.46909 * 300.71686 * 1 2 3 31 31 H 1.08997 * 109.46997 * 60.71799 * 1 2 3 32 32 H 1.09007 * 110.40675 * 98.36871 * 4 2 1 33 33 H 1.08999 * 110.40734 * 335.94574 * 4 2 1 34 34 H 1.09007 * 110.36548 * 274.75365 * 11 10 8 35 35 H 1.09004 * 110.36793 * 37.07090 * 11 10 8 36 36 H 1.08994 * 111.19165 * 279.19208 * 12 11 10 37 37 H 1.09009 * 110.93883 * 155.29088 * 12 11 10 38 38 H 0.96699 * 114.00086 * 185.02968 * 14 13 12 39 39 H 0.96997 * 119.99794 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.87466 * 300.43733 * 23 10 8 41 41 H 1.09000 * 109.88345 * 61.59347 * 23 10 8 42 42 H 1.08994 * 110.41217 * 78.94066 * 24 5 4 43 43 H 1.09005 * 110.40586 * 201.36922 * 24 5 4 44 44 H 1.08997 * 109.47498 * 59.99803 * 26 25 2 45 45 H 1.09003 * 109.47135 * 180.02562 * 26 25 2 46 46 H 1.09004 * 109.46880 * 299.99820 * 26 25 2 47 47 H 1.09003 * 109.46748 * 299.99640 * 27 25 2 48 48 H 1.08998 * 109.47517 * 59.99907 * 27 25 2 49 49 H 0.96694 * 113.99816 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7708 -1.2253 5 7 3.2679 -1.4788 -0.7248 6 6 4.4436 -1.6616 -1.3579 7 8 5.3396 -2.2695 -0.8102 8 6 4.6438 -1.1154 -2.7346 9 8 3.7476 -0.5078 -3.2825 10 7 5.8175 -1.3030 -3.3699 11 6 6.9871 -2.0138 -2.8220 12 6 7.7770 -2.4926 -4.0683 13 6 7.5823 -1.2956 -5.0361 14 8 8.5252 -0.2593 -4.7547 15 6 7.6945 -1.7455 -6.4699 16 1 7.9666 -2.7659 -6.6960 17 6 7.4498 -0.8545 -7.4932 18 7 7.1189 0.3883 -7.2179 19 14 7.5895 -1.4120 -9.2706 20 1 7.9734 -2.8460 -9.3108 21 1 6.2818 -1.2308 -9.9505 22 1 8.6239 -0.6026 -9.9634 23 6 6.1460 -0.8270 -4.7216 24 6 2.8814 -1.9460 0.6268 25 6 2.0686 -0.7712 1.2229 26 6 2.9688 0.1328 2.0675 27 6 0.9100 -1.3052 2.0675 28 8 1.4292 -2.0149 3.1939 29 1 -0.3633 -1.0276 0.0129 30 1 -0.3633 0.5249 0.8835 31 1 -0.3633 0.5026 -0.8963 32 1 2.3383 -0.0775 -2.0214 33 1 1.3242 -1.4857 -1.5797 34 1 7.5952 -1.3372 -2.2214 35 1 6.6667 -2.8679 -2.2253 36 1 7.3454 -3.4038 -4.4822 37 1 8.8312 -2.6352 -3.8303 38 1 8.3970 0.5424 -5.2799 39 1 6.9464 1.0150 -7.9379 40 1 5.4502 -1.2538 -5.4440 41 1 6.0956 0.2614 -4.7538 42 1 2.2642 -2.8417 0.5573 43 1 3.7683 -2.1405 1.2298 44 1 2.3970 0.9937 2.4138 45 1 3.3415 -0.4256 2.9263 46 1 3.8098 0.4742 1.4639 47 1 0.2987 -0.4719 2.4138 48 1 0.2999 -1.9772 1.4639 49 1 0.7491 -2.3817 3.7751 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327748897.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:55 Heat of formation + Delta-G solvation = -175.733386 kcal Electronic energy + Delta-G solvation = -31357.840604 eV Core-core repulsion = 27091.424879 eV Total energy + Delta-G solvation = -4266.415725 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.08599 -40.84798 -39.49182 -38.93358 -37.26103 -36.17039 -34.42359 -34.26056 -32.32642 -31.91481 -29.77624 -28.62707 -28.12909 -27.26625 -26.33900 -25.01311 -23.45592 -22.71952 -21.48948 -20.47339 -19.63327 -19.13902 -18.53711 -18.13602 -17.95603 -17.52580 -17.20922 -16.84480 -16.39576 -16.23992 -16.16520 -15.42445 -15.16988 -14.83704 -14.79836 -14.66506 -14.39878 -14.28985 -14.06394 -14.03610 -13.73457 -13.55538 -13.46750 -13.28139 -13.04230 -12.89817 -12.66407 -12.64422 -12.57439 -12.40975 -12.32525 -12.25844 -12.03124 -11.78259 -11.49174 -11.32210 -11.18492 -10.73143 -10.68407 -10.49894 -10.29890 -10.05184 -9.74063 -8.28189 -6.43942 0.26676 1.09507 1.40781 1.44093 1.54847 2.03686 2.29020 2.39153 2.97674 3.02579 3.25090 3.43567 3.58531 3.75398 3.88496 4.00176 4.10373 4.12181 4.20749 4.29403 4.31592 4.44073 4.51611 4.57066 4.59192 4.62794 4.68107 4.71750 4.76310 4.84914 4.88726 4.95570 4.96526 5.05186 5.06926 5.13377 5.18074 5.22445 5.27934 5.36730 5.42485 5.46676 5.71028 6.00229 6.06199 6.25469 6.48719 6.64306 6.85131 7.01785 7.25045 7.33117 8.78476 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023137 B = 0.002634 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.868786 B =10627.380122 C =11226.161932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.082 0.918 4 C 0.086 3.914 5 N -0.595 5.595 6 C 0.531 3.469 7 O -0.537 6.537 8 C 0.506 3.494 9 O -0.549 6.549 10 N -0.584 5.584 11 C 0.108 3.892 12 C -0.114 4.114 13 C 0.234 3.766 14 O -0.587 6.587 15 C -0.556 4.556 16 H 0.068 0.932 17 C 0.027 3.973 18 N -0.914 5.914 19 Si 0.965 3.035 20 H -0.266 1.266 21 H -0.281 1.281 22 H -0.278 1.278 23 C 0.120 3.880 24 C 0.118 3.882 25 C -0.068 4.068 26 C -0.129 4.129 27 C 0.094 3.906 28 O -0.592 6.592 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.376 0.624 39 H 0.271 0.729 40 H 0.048 0.952 41 H 0.045 0.955 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.032 0.968 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.170 -2.323 18.503 24.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.100 0.900 4 C -0.036 4.036 5 N -0.328 5.328 6 C 0.314 3.686 7 O -0.415 6.415 8 C 0.289 3.711 9 O -0.429 6.429 10 N -0.316 5.316 11 C -0.014 4.014 12 C -0.151 4.151 13 C 0.194 3.806 14 O -0.395 6.395 15 C -0.594 4.594 16 H 0.086 0.914 17 C -0.174 4.174 18 N -0.553 5.553 19 Si 0.790 3.210 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.204 1.204 23 C -0.002 4.002 24 C -0.003 4.003 25 C -0.069 4.069 26 C -0.187 4.187 27 C 0.016 3.984 28 O -0.401 6.401 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.119 0.881 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.226 0.774 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.051 0.949 47 H 0.092 0.908 48 H 0.085 0.915 49 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -15.377 -2.447 18.567 24.231 hybrid contribution -0.350 0.426 -1.522 1.619 sum -15.727 -2.021 17.044 23.279 Atomic orbital electron populations 1.21923 0.91359 1.03430 1.03433 1.22186 0.98250 0.98989 0.91534 0.89992 1.23141 0.85299 0.96807 0.98350 1.48782 1.12145 1.53571 1.18282 1.19476 0.82244 0.80895 0.85972 1.90681 1.41517 1.42048 1.67208 1.20069 0.82184 0.81682 0.87121 1.90608 1.41474 1.42877 1.67941 1.48742 1.12859 1.52592 1.17442 1.22678 0.85454 0.96897 0.96344 1.22857 1.01017 0.97447 0.93812 1.19712 0.82763 0.85138 0.93012 1.86126 1.57491 1.28639 1.67200 1.21803 1.48619 0.97914 0.91041 0.91424 1.25807 0.93020 0.94937 1.03625 1.69800 1.46607 1.04499 1.34388 0.85393 0.77638 0.78733 0.79195 1.19059 1.20729 1.20352 1.22759 0.99984 0.97837 0.79610 1.22727 0.99403 0.97548 0.80641 1.21627 0.95900 0.94513 0.94824 1.21728 0.98567 0.99240 0.99119 1.22347 0.93133 0.95988 0.86926 1.86447 1.39498 1.74637 1.39522 0.90796 0.90041 0.91842 0.89127 0.89233 0.91490 0.88081 0.89553 0.89083 0.77440 0.91952 0.93335 0.93701 0.89192 0.91096 0.90742 0.92091 0.94865 0.90814 0.91507 0.75213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 7.93 71.98 0.57 -0.81 16 2 C -0.09 -1.48 3.30 -9.89 -0.03 -1.51 16 3 H 0.08 1.46 7.71 -2.39 -0.02 1.44 16 4 C 0.09 2.03 6.15 86.53 0.53 2.56 16 5 N -0.59 -17.07 3.31 -808.76 -2.68 -19.75 16 6 C 0.53 19.32 7.95 87.27 0.69 20.01 16 7 O -0.54 -20.77 14.04 -3.23 -0.05 -20.82 16 8 C 0.51 21.18 7.89 87.27 0.69 21.87 16 9 O -0.55 -24.28 14.10 -3.26 -0.05 -24.33 16 10 N -0.58 -25.80 3.32 -812.90 -2.70 -28.51 16 11 C 0.11 4.30 6.08 86.93 0.53 4.83 16 12 C -0.11 -4.71 6.24 32.06 0.20 -4.51 16 13 C 0.23 11.59 0.85 -10.35 -0.01 11.58 16 14 O -0.59 -30.21 13.08 -148.98 -1.95 -32.16 16 15 C -0.56 -29.25 8.12 25.60 0.21 -29.04 16 16 H 0.07 3.49 7.78 -2.91 -0.02 3.46 16 17 C 0.03 1.42 5.28 84.65 0.45 1.87 16 18 N -0.91 -49.03 10.98 21.45 0.24 -48.79 16 19 Si 0.97 41.81 29.54 68.60 2.03 43.83 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 23 C 0.12 6.01 5.24 86.73 0.45 6.47 16 24 C 0.12 2.66 5.96 86.68 0.52 3.17 16 25 C -0.07 -1.12 0.84 -51.13 -0.04 -1.16 16 26 C -0.13 -2.38 8.13 71.98 0.58 -1.79 16 27 C 0.09 0.95 4.65 71.98 0.33 1.28 16 28 O -0.59 -7.09 12.71 -148.98 -1.89 -8.99 16 29 H 0.07 0.55 6.62 -2.39 -0.02 0.54 16 30 H 0.08 0.50 6.99 -2.39 -0.02 0.49 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.09 2.70 5.48 -2.38 -0.01 2.69 16 33 H 0.09 1.82 7.86 -2.39 -0.02 1.80 16 34 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 35 H 0.10 3.78 6.13 -2.38 -0.01 3.76 16 36 H 0.09 3.41 8.04 -2.39 -0.02 3.39 16 37 H 0.09 3.53 8.14 -2.38 -0.02 3.51 16 38 H 0.38 19.88 7.47 -74.06 -0.55 19.32 16 39 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 40 H 0.05 2.61 7.81 -2.39 -0.02 2.60 16 41 H 0.04 2.43 7.92 -2.39 -0.02 2.42 16 42 H 0.09 1.76 7.84 -2.39 -0.02 1.74 16 43 H 0.07 1.87 7.62 -2.38 -0.02 1.85 16 44 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.06 1.19 7.62 -2.39 -0.02 1.17 16 46 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.07 0.48 6.89 -2.39 -0.02 0.46 16 48 H 0.07 0.50 6.68 -2.39 -0.02 0.49 16 49 H 0.40 1.11 9.12 -74.06 -0.68 0.43 16 Total: -1.00 -66.38 381.59 -1.62 -68.00 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: -0.24 Total: 36.70 kcal Atomic # 6 Polarization: 29.14 SS G_CDS: 5.67 Total: 34.81 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -5.15 Total: -97.05 kcal Atomic # 8 Polarization: -82.36 SS G_CDS: -3.93 Total: -86.29 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -66.38 -1.62 -68.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327748897.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.735 kcal (2) G-P(sol) polarization free energy of solvation -66.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds