Wall clock time and date at job start Sat Apr 11 2020 06:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.30681 * 2 1 4 4 C 1.54395 * 110.34454 * 237.82558 * 2 1 3 5 5 N 1.48146 * 104.61881 * 217.26411 * 4 2 1 6 6 C 1.34771 * 127.83913 * 219.58631 * 5 4 2 7 7 O 1.21352 * 119.99904 * 180.02562 * 6 5 4 8 8 C 1.49450 * 120.00172 * 0.02562 * 6 5 4 9 9 O 1.21354 * 119.99281 * 0.02562 * 8 6 5 10 10 N 1.34771 * 120.00172 * 179.97438 * 8 6 5 11 11 C 1.47426 * 125.64804 * 359.97438 * 10 8 6 12 12 C 1.54911 * 104.83205 * 155.90632 * 11 10 8 13 13 C 1.55158 * 101.58094 * 37.00583 * 12 11 10 14 14 O 1.42911 * 110.71844 * 83.04061 * 13 12 11 15 15 C 1.50699 * 110.72217 * 206.13378 * 13 12 11 16 16 H 1.07999 * 119.99714 * 116.48407 * 15 13 12 17 17 C 1.37875 * 120.00039 * 296.49068 * 15 13 12 18 18 N 1.31516 * 120.00322 * 353.45655 * 17 15 13 19 19 Si 1.86806 * 120.00026 * 173.18098 * 17 15 13 20 20 H 1.48503 * 109.46860 * 89.99925 * 19 17 15 21 21 H 1.48494 * 109.47311 * 209.99894 * 19 17 15 22 22 H 1.48497 * 109.46985 * 330.00127 * 19 17 15 23 23 C 1.47019 * 125.64526 * 180.02562 * 10 8 6 24 24 C 1.48149 * 104.32439 * 39.84461 * 5 4 2 25 25 C 1.54282 * 110.34369 * 122.28835 * 2 1 3 26 26 C 1.53007 * 110.33969 * 359.97438 * 25 2 1 27 27 C 1.52999 * 110.34313 * 237.84605 * 25 2 1 28 28 O 1.42904 * 109.47034 * 179.97438 * 27 25 2 29 29 H 1.08998 * 109.46963 * 180.71964 * 1 2 3 30 30 H 1.09000 * 109.47000 * 300.72178 * 1 2 3 31 31 H 1.09007 * 109.46663 * 60.72180 * 1 2 3 32 32 H 1.08991 * 110.40800 * 98.47826 * 4 2 1 33 33 H 1.09004 * 110.50430 * 336.09659 * 4 2 1 34 34 H 1.08997 * 110.36491 * 37.06711 * 11 10 8 35 35 H 1.08997 * 110.36233 * 274.74155 * 11 10 8 36 36 H 1.08998 * 111.00402 * 278.93897 * 12 11 10 37 37 H 1.08989 * 111.00831 * 155.08119 * 12 11 10 38 38 H 0.96699 * 113.99742 * 184.25992 * 14 13 12 39 39 H 0.97005 * 119.99652 * 2.31784 * 18 17 15 40 40 H 1.08997 * 109.88440 * 61.61085 * 23 10 8 41 41 H 1.09001 * 109.88903 * 300.43862 * 23 10 8 42 42 H 1.09001 * 110.41017 * 78.93482 * 24 5 4 43 43 H 1.08996 * 110.40980 * 201.37457 * 24 5 4 44 44 H 1.08999 * 109.46887 * 60.00230 * 26 25 2 45 45 H 1.08999 * 109.46694 * 180.02562 * 26 25 2 46 46 H 1.08999 * 109.46994 * 300.00033 * 26 25 2 47 47 H 1.08995 * 109.47515 * 299.99676 * 27 25 2 48 48 H 1.09006 * 109.47211 * 60.00157 * 27 25 2 49 49 H 0.96701 * 113.99708 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0668 -0.7709 -1.2253 5 7 3.2665 -1.4810 -0.7241 6 6 4.4425 -1.6651 -1.3562 7 8 5.3370 -2.2748 -0.8079 8 6 4.6449 -1.1184 -2.7323 9 8 3.7504 -0.5083 -3.2803 10 7 5.8211 -1.3020 -3.3641 11 6 6.9874 -2.0189 -2.8172 12 6 7.7841 -2.4868 -4.0606 13 6 7.5917 -1.2858 -5.0239 14 8 8.5353 -0.2515 -4.7373 15 6 7.7094 -1.7293 -6.4593 16 1 6.8604 -1.6458 -7.1217 17 6 8.9008 -2.2419 -6.9270 18 7 9.9697 -2.2253 -6.1609 19 14 8.9951 -2.9669 -8.6460 20 1 9.3603 -1.9010 -9.6134 21 1 10.0245 -4.0367 -8.6763 22 1 7.6754 -3.5392 -9.0148 23 6 6.1538 -0.8196 -4.7125 24 6 2.8780 -1.9485 0.6269 25 6 2.0664 -0.7727 1.2229 26 6 0.9061 -1.3050 2.0664 27 6 2.9671 0.1294 2.0689 28 8 3.4525 -0.6039 3.1954 29 1 -0.3633 -1.0276 0.0129 30 1 -0.3633 0.5250 0.8834 31 1 -0.3633 0.5026 -0.8965 32 1 2.3401 -0.0776 -2.0206 33 1 1.3243 -1.4845 -1.5827 34 1 6.6634 -2.8775 -2.2291 35 1 7.5937 -1.3481 -2.2086 36 1 7.3548 -3.3966 -4.4801 37 1 8.8374 -2.6290 -3.8191 38 1 8.4157 0.5481 -5.2678 39 1 9.9118 -1.8833 -5.2550 40 1 6.1028 0.2688 -4.7399 41 1 5.4611 -1.2438 -5.4394 42 1 2.2594 -2.8432 0.5563 43 1 3.7640 -2.1445 1.2307 44 1 0.2953 -1.9756 1.4621 45 1 1.3005 -1.8474 2.9257 46 1 0.2960 -0.4707 2.4127 47 1 3.8092 0.4699 1.4664 48 1 2.3962 0.9909 2.4153 49 1 4.0320 -0.0930 3.7771 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327748899.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:02 Heat of formation + Delta-G solvation = -152.380910 kcal Electronic energy + Delta-G solvation = -31352.618393 eV Core-core repulsion = 27087.215307 eV Total energy + Delta-G solvation = -4265.403085 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.92550 -39.70782 -38.20343 -37.47974 -36.60507 -34.70820 -33.64253 -32.34920 -31.31099 -29.96231 -28.45181 -27.80160 -26.90544 -26.04249 -25.01303 -23.43515 -22.31346 -21.53697 -19.88315 -19.26748 -18.84250 -17.71634 -17.55868 -16.90052 -16.73869 -16.37391 -15.90226 -15.56752 -15.30924 -15.28868 -14.49090 -14.29002 -14.06959 -13.83031 -13.50892 -13.38836 -13.18603 -13.02494 -12.95245 -12.68803 -12.52957 -12.31685 -12.28661 -12.02677 -11.85269 -11.77803 -11.67416 -11.22784 -11.12434 -11.03462 -10.81192 -10.71519 -10.63306 -10.50483 -10.27641 -10.18103 -10.14448 -9.44775 -9.12123 -8.93618 -8.58386 -8.29941 -8.15891 -6.41487 -4.28475 1.62595 2.33896 3.37968 3.39427 3.41893 3.56060 3.57917 3.77427 4.14775 4.20573 4.44005 4.46938 4.59862 4.78302 4.87025 4.94878 5.09231 5.17449 5.20401 5.32196 5.32621 5.36641 5.37706 5.45457 5.48746 5.57758 5.64829 5.69539 5.74375 5.74545 5.83808 5.87713 5.90898 6.00795 6.08289 6.15974 6.22843 6.43014 6.53861 6.78307 6.89751 7.21309 7.25730 7.29331 7.61324 7.81298 7.86439 8.22441 8.25816 8.77810 8.93127 9.55916 10.96928 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024981 B = 0.002552 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.564908 B =10969.764382 C =11463.733109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.082 0.918 4 C 0.092 3.908 5 N -0.601 5.601 6 C 0.530 3.470 7 O -0.514 6.514 8 C 0.514 3.486 9 O -0.536 6.536 10 N -0.572 5.572 11 C 0.095 3.905 12 C -0.111 4.111 13 C 0.232 3.768 14 O -0.572 6.572 15 C -0.640 4.640 16 H 0.055 0.945 17 C 0.040 3.960 18 N -0.889 5.889 19 Si 1.068 2.932 20 H -0.287 1.287 21 H -0.283 1.283 22 H -0.288 1.288 23 C 0.090 3.910 24 C 0.116 3.884 25 C -0.071 4.071 26 C -0.133 4.133 27 C 0.091 3.909 28 O -0.569 6.569 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.362 0.638 39 H 0.289 0.711 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.046 0.954 48 H 0.048 0.952 49 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.375 4.393 15.937 23.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.101 0.899 4 C -0.030 4.030 5 N -0.336 5.336 6 C 0.314 3.686 7 O -0.389 6.389 8 C 0.297 3.703 9 O -0.416 6.416 10 N -0.304 5.304 11 C -0.027 4.027 12 C -0.150 4.150 13 C 0.192 3.808 14 O -0.377 6.377 15 C -0.677 4.677 16 H 0.073 0.927 17 C -0.170 4.170 18 N -0.523 5.523 19 Si 0.896 3.104 20 H -0.214 1.214 21 H -0.209 1.209 22 H -0.214 1.214 23 C -0.032 4.032 24 C -0.006 4.006 25 C -0.072 4.072 26 C -0.191 4.191 27 C 0.013 3.987 28 O -0.375 6.375 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.134 0.866 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.208 0.792 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.111 0.889 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.064 0.936 48 H 0.066 0.934 49 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -16.390 2.756 15.001 22.389 hybrid contribution -0.995 1.649 0.922 2.135 sum -17.385 4.404 15.923 23.983 Atomic orbital electron populations 1.21899 0.93563 1.02462 1.02092 1.22187 0.96605 0.99662 0.93434 0.89930 1.22966 0.86013 0.96716 0.97350 1.48685 1.12714 1.54617 1.17549 1.19887 0.81227 0.80702 0.86783 1.90735 1.40713 1.40478 1.66965 1.19537 0.82519 0.82009 0.86266 1.90608 1.41233 1.42494 1.67236 1.48484 1.12194 1.51972 1.17701 1.22790 0.85892 0.96638 0.97373 1.22866 1.00261 0.98581 0.93257 1.19852 0.81606 0.84880 0.94452 1.86391 1.57946 1.27459 1.65882 1.22158 1.01315 1.49339 0.94918 0.92697 1.25753 0.91790 0.94170 1.05315 1.70631 1.29476 1.41366 1.10870 0.83574 0.75614 0.76815 0.74393 1.21391 1.20864 1.21401 1.23107 1.00702 0.98457 0.80916 1.22561 0.99765 0.95863 0.82391 1.21625 0.95587 0.95452 0.94527 1.21844 0.96414 1.01171 0.99641 1.22165 0.96309 0.93024 0.87229 1.86446 1.69334 1.42892 1.38814 0.91833 0.92002 0.92169 0.86634 0.90780 0.89333 0.91348 0.90307 0.89826 0.79239 0.89708 0.92214 0.90635 0.90636 0.88908 0.92049 0.91671 0.92075 0.93555 0.93372 0.77306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 7.93 37.16 0.29 -0.60 16 2 C -0.10 -0.84 3.30 -89.22 -0.29 -1.13 16 3 H 0.08 0.69 7.72 -51.93 -0.40 0.29 16 4 C 0.09 1.04 6.14 -2.41 -0.01 1.03 16 5 N -0.60 -8.28 3.31 -169.55 -0.56 -8.84 16 6 C 0.53 9.13 7.95 -11.59 -0.09 9.04 16 7 O -0.51 -9.74 14.04 5.50 0.08 -9.66 16 8 C 0.51 9.77 7.89 -11.59 -0.09 9.68 16 9 O -0.54 -10.44 14.10 5.49 0.08 -10.37 16 10 N -0.57 -11.56 3.33 -171.03 -0.57 -12.13 16 11 C 0.09 1.90 6.06 -2.53 -0.02 1.89 16 12 C -0.11 -2.50 5.58 -24.58 -0.14 -2.64 16 13 C 0.23 5.48 0.68 -89.93 -0.06 5.42 16 14 O -0.57 -13.53 11.50 -35.23 -0.41 -13.94 16 15 C -0.64 -16.78 8.19 -34.44 -0.28 -17.06 16 16 H 0.05 1.44 7.56 -52.49 -0.40 1.05 16 17 C 0.04 1.07 5.27 -17.82 -0.09 0.98 16 18 N -0.89 -25.45 13.36 55.43 0.74 -24.71 16 19 Si 1.07 24.05 29.91 -169.99 -5.08 18.96 16 20 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 23 C 0.09 1.92 6.22 -3.06 -0.02 1.90 16 24 C 0.12 1.33 6.09 -2.19 -0.01 1.31 16 25 C -0.07 -0.62 0.84 -152.89 -0.13 -0.75 16 26 C -0.13 -0.95 7.13 37.16 0.27 -0.68 16 27 C 0.09 0.78 5.72 37.16 0.21 0.99 16 28 O -0.57 -4.97 12.35 -35.23 -0.44 -5.41 16 29 H 0.06 0.38 6.61 -51.93 -0.34 0.04 16 30 H 0.06 0.33 6.98 -51.93 -0.36 -0.03 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.12 1.55 5.48 -51.93 -0.28 1.26 16 33 H 0.07 0.77 7.87 -51.93 -0.41 0.36 16 34 H 0.09 1.72 6.16 -51.93 -0.32 1.40 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.08 1.80 8.04 -51.93 -0.42 1.38 16 37 H 0.08 1.97 6.91 -51.94 -0.36 1.61 16 38 H 0.36 7.60 9.09 45.56 0.41 8.02 16 39 H 0.29 8.31 4.86 -40.82 -0.20 8.12 16 40 H 0.06 1.23 8.07 -51.93 -0.42 0.81 16 41 H 0.08 1.67 7.65 -51.93 -0.40 1.27 16 42 H 0.08 0.78 7.84 -51.93 -0.41 0.37 16 43 H 0.09 1.23 7.20 -51.93 -0.37 0.85 16 44 H 0.06 0.39 6.67 -51.93 -0.35 0.05 16 45 H 0.06 0.52 7.62 -51.93 -0.40 0.13 16 46 H 0.06 0.37 6.89 -51.93 -0.36 0.01 16 47 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.38 1.81 9.12 45.56 0.42 2.23 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -31.88 379.11 -6.76 -38.65 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -5.84 Total: 12.36 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -0.47 Total: 9.37 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: -0.39 Total: -45.68 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -0.69 Total: -39.37 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -5.08 Total: 18.96 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.88 -6.76 -38.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327748899.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.736 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds