Wall clock time and date at job start Sat Apr 11 2020 06:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.30681 * 2 1 4 4 C 1.54395 * 110.34454 * 237.82558 * 2 1 3 5 5 N 1.48146 * 104.61881 * 217.26411 * 4 2 1 6 6 C 1.34771 * 127.83913 * 219.58631 * 5 4 2 7 7 O 1.21352 * 119.99904 * 180.02562 * 6 5 4 8 8 C 1.49450 * 120.00172 * 0.02562 * 6 5 4 9 9 O 1.21354 * 119.99281 * 0.02562 * 8 6 5 10 10 N 1.34771 * 120.00172 * 179.97438 * 8 6 5 11 11 C 1.47426 * 125.64804 * 359.97438 * 10 8 6 12 12 C 1.54911 * 104.83205 * 155.90632 * 11 10 8 13 13 C 1.55158 * 101.58094 * 37.00583 * 12 11 10 14 14 O 1.42911 * 110.71844 * 83.04061 * 13 12 11 15 15 C 1.50699 * 110.72217 * 206.13378 * 13 12 11 16 16 H 1.07999 * 119.99714 * 116.48407 * 15 13 12 17 17 C 1.37875 * 120.00039 * 296.49068 * 15 13 12 18 18 N 1.31516 * 120.00322 * 353.45655 * 17 15 13 19 19 Si 1.86806 * 120.00026 * 173.18098 * 17 15 13 20 20 H 1.48503 * 109.46860 * 89.99925 * 19 17 15 21 21 H 1.48494 * 109.47311 * 209.99894 * 19 17 15 22 22 H 1.48497 * 109.46985 * 330.00127 * 19 17 15 23 23 C 1.47019 * 125.64526 * 180.02562 * 10 8 6 24 24 C 1.48149 * 104.32439 * 39.84461 * 5 4 2 25 25 C 1.54282 * 110.34369 * 122.28835 * 2 1 3 26 26 C 1.53007 * 110.33969 * 359.97438 * 25 2 1 27 27 C 1.52999 * 110.34313 * 237.84605 * 25 2 1 28 28 O 1.42904 * 109.47034 * 179.97438 * 27 25 2 29 29 H 1.08998 * 109.46963 * 180.71964 * 1 2 3 30 30 H 1.09000 * 109.47000 * 300.72178 * 1 2 3 31 31 H 1.09007 * 109.46663 * 60.72180 * 1 2 3 32 32 H 1.08991 * 110.40800 * 98.47826 * 4 2 1 33 33 H 1.09004 * 110.50430 * 336.09659 * 4 2 1 34 34 H 1.08997 * 110.36491 * 37.06711 * 11 10 8 35 35 H 1.08997 * 110.36233 * 274.74155 * 11 10 8 36 36 H 1.08998 * 111.00402 * 278.93897 * 12 11 10 37 37 H 1.08989 * 111.00831 * 155.08119 * 12 11 10 38 38 H 0.96699 * 113.99742 * 184.25992 * 14 13 12 39 39 H 0.97005 * 119.99652 * 2.31784 * 18 17 15 40 40 H 1.08997 * 109.88440 * 61.61085 * 23 10 8 41 41 H 1.09001 * 109.88903 * 300.43862 * 23 10 8 42 42 H 1.09001 * 110.41017 * 78.93482 * 24 5 4 43 43 H 1.08996 * 110.40980 * 201.37457 * 24 5 4 44 44 H 1.08999 * 109.46887 * 60.00230 * 26 25 2 45 45 H 1.08999 * 109.46694 * 180.02562 * 26 25 2 46 46 H 1.08999 * 109.46994 * 300.00033 * 26 25 2 47 47 H 1.08995 * 109.47515 * 299.99676 * 27 25 2 48 48 H 1.09006 * 109.47211 * 60.00157 * 27 25 2 49 49 H 0.96701 * 113.99708 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0668 -0.7709 -1.2253 5 7 3.2665 -1.4810 -0.7241 6 6 4.4425 -1.6651 -1.3562 7 8 5.3370 -2.2748 -0.8079 8 6 4.6449 -1.1184 -2.7323 9 8 3.7504 -0.5083 -3.2803 10 7 5.8211 -1.3020 -3.3641 11 6 6.9874 -2.0189 -2.8172 12 6 7.7841 -2.4868 -4.0606 13 6 7.5917 -1.2858 -5.0239 14 8 8.5353 -0.2515 -4.7373 15 6 7.7094 -1.7293 -6.4593 16 1 6.8604 -1.6458 -7.1217 17 6 8.9008 -2.2419 -6.9270 18 7 9.9697 -2.2253 -6.1609 19 14 8.9951 -2.9669 -8.6460 20 1 9.3603 -1.9010 -9.6134 21 1 10.0245 -4.0367 -8.6763 22 1 7.6754 -3.5392 -9.0148 23 6 6.1538 -0.8196 -4.7125 24 6 2.8780 -1.9485 0.6269 25 6 2.0664 -0.7727 1.2229 26 6 0.9061 -1.3050 2.0664 27 6 2.9671 0.1294 2.0689 28 8 3.4525 -0.6039 3.1954 29 1 -0.3633 -1.0276 0.0129 30 1 -0.3633 0.5250 0.8834 31 1 -0.3633 0.5026 -0.8965 32 1 2.3401 -0.0776 -2.0206 33 1 1.3243 -1.4845 -1.5827 34 1 6.6634 -2.8775 -2.2291 35 1 7.5937 -1.3481 -2.2086 36 1 7.3548 -3.3966 -4.4801 37 1 8.8374 -2.6290 -3.8191 38 1 8.4157 0.5481 -5.2678 39 1 9.9118 -1.8833 -5.2550 40 1 6.1028 0.2688 -4.7399 41 1 5.4611 -1.2438 -5.4394 42 1 2.2594 -2.8432 0.5563 43 1 3.7640 -2.1445 1.2307 44 1 0.2953 -1.9756 1.4621 45 1 1.3005 -1.8474 2.9257 46 1 0.2960 -0.4707 2.4127 47 1 3.8092 0.4699 1.4664 48 1 2.3962 0.9909 2.4153 49 1 4.0320 -0.0930 3.7771 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327748899.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:01 Heat of formation + Delta-G solvation = -177.482806 kcal Electronic energy + Delta-G solvation = -31353.706892 eV Core-core repulsion = 27087.215307 eV Total energy + Delta-G solvation = -4266.491585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.16552 -40.94286 -39.61016 -39.06656 -37.37424 -36.39812 -34.65449 -34.37413 -32.01488 -31.72093 -30.19850 -28.76315 -27.80152 -26.77797 -26.74885 -25.04228 -23.46521 -22.72934 -21.71938 -20.59295 -19.72641 -19.49388 -18.61448 -18.18618 -17.99971 -17.61548 -17.37075 -17.00447 -16.52769 -16.19712 -15.70198 -15.60546 -15.28060 -15.00694 -14.89656 -14.77909 -14.74642 -14.30212 -14.17429 -14.07145 -13.98449 -13.60945 -13.43374 -13.08378 -12.96433 -12.88169 -12.64398 -12.55041 -12.46243 -12.35000 -12.26384 -12.08871 -11.91570 -11.77374 -11.54439 -11.31482 -11.26805 -10.93502 -10.65127 -10.53368 -10.16566 -10.10598 -9.85753 -8.53942 -6.41789 0.18817 1.00359 1.56721 1.63650 1.81633 1.95715 2.19897 2.57208 2.94962 3.15370 3.17117 3.40437 3.51536 3.57821 3.72995 3.92963 3.94622 4.07175 4.18450 4.18576 4.24788 4.30394 4.42426 4.49634 4.52436 4.56931 4.62999 4.67053 4.70500 4.72329 4.78345 4.87614 4.90544 4.97855 5.01622 5.05017 5.10672 5.23317 5.27168 5.34608 5.39935 5.58046 5.83628 5.98884 6.10276 6.16840 6.39412 6.64269 6.76542 6.83334 7.10082 7.50614 8.83503 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024981 B = 0.002552 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.564908 B =10969.764382 C =11463.733109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.084 0.916 4 C 0.086 3.914 5 N -0.594 5.594 6 C 0.528 3.472 7 O -0.539 6.539 8 C 0.513 3.487 9 O -0.541 6.541 10 N -0.580 5.580 11 C 0.113 3.887 12 C -0.108 4.108 13 C 0.224 3.776 14 O -0.580 6.580 15 C -0.647 4.647 16 H 0.050 0.950 17 C -0.004 4.004 18 N -0.916 5.916 19 Si 1.112 2.888 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.101 3.899 24 C 0.112 3.888 25 C -0.066 4.066 26 C -0.127 4.127 27 C 0.091 3.909 28 O -0.584 6.584 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.371 0.629 39 H 0.279 0.721 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.055 0.945 46 H 0.078 0.922 47 H 0.026 0.974 48 H 0.071 0.929 49 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.907 4.814 16.815 26.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.102 0.898 4 C -0.035 4.035 5 N -0.327 5.327 6 C 0.311 3.689 7 O -0.417 6.417 8 C 0.297 3.703 9 O -0.420 6.420 10 N -0.312 5.312 11 C -0.009 4.009 12 C -0.146 4.146 13 C 0.184 3.816 14 O -0.386 6.386 15 C -0.685 4.685 16 H 0.069 0.931 17 C -0.208 4.208 18 N -0.551 5.551 19 Si 0.935 3.065 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.022 4.022 24 C -0.009 4.009 25 C -0.067 4.067 26 C -0.185 4.185 27 C 0.013 3.987 28 O -0.392 6.392 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.218 0.782 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.044 0.956 48 H 0.089 0.911 49 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -18.981 3.215 15.910 24.975 hybrid contribution -0.299 1.575 0.706 1.751 sum -19.279 4.790 16.616 25.898 Atomic orbital electron populations 1.21899 0.91350 1.03279 1.03082 1.22151 0.98248 0.99021 0.91516 0.89789 1.23155 0.85212 0.96799 0.98349 1.48798 1.12130 1.53451 1.18286 1.19504 0.82277 0.81038 0.86097 1.90717 1.41812 1.41969 1.67197 1.19949 0.81822 0.81525 0.87010 1.90610 1.41196 1.42511 1.67691 1.48472 1.12801 1.52578 1.17361 1.22578 0.85531 0.96793 0.96025 1.22734 0.99663 0.98001 0.94225 1.19864 0.82802 0.85255 0.93673 1.86363 1.58236 1.27928 1.66095 1.22455 1.01015 1.48804 0.96214 0.93149 1.27009 0.91598 0.94082 1.08138 1.70738 1.30380 1.43187 1.10836 0.82994 0.76115 0.76455 0.70968 1.20085 1.21073 1.19962 1.22811 0.99040 0.98707 0.81606 1.22793 0.99559 0.97774 0.80748 1.21649 0.95901 0.94370 0.94802 1.21820 0.95746 1.01874 0.99023 1.22167 0.95845 0.93619 0.87081 1.86408 1.69889 1.43866 1.39065 0.91123 0.90312 0.91920 0.88667 0.89346 0.88569 0.91419 0.91119 0.91346 0.78189 0.90866 0.91559 0.91521 0.89173 0.90916 0.91002 0.92594 0.90327 0.95609 0.91094 0.75487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 7.93 71.98 0.57 -0.67 16 2 C -0.09 -1.29 3.30 -9.88 -0.03 -1.33 16 3 H 0.08 1.22 7.72 -2.38 -0.02 1.20 16 4 C 0.09 1.82 6.14 86.54 0.53 2.36 16 5 N -0.59 -15.85 3.31 -808.71 -2.68 -18.53 16 6 C 0.53 18.12 7.95 87.27 0.69 18.81 16 7 O -0.54 -20.56 14.04 -3.25 -0.05 -20.60 16 8 C 0.51 19.46 7.89 87.27 0.69 20.14 16 9 O -0.54 -20.86 14.10 -3.26 -0.05 -20.90 16 10 N -0.58 -23.54 3.33 -813.37 -2.71 -26.25 16 11 C 0.11 4.57 6.06 86.86 0.53 5.09 16 12 C -0.11 -4.95 5.58 31.99 0.18 -4.77 16 13 C 0.22 10.72 0.68 -10.35 -0.01 10.72 16 14 O -0.58 -27.85 11.50 -148.98 -1.71 -29.56 16 15 C -0.65 -34.20 8.19 25.60 0.21 -33.99 16 16 H 0.05 2.65 7.56 -2.91 -0.02 2.63 16 17 C 0.00 -0.22 5.27 84.65 0.45 0.23 16 18 N -0.92 -53.19 13.36 21.45 0.29 -52.90 16 19 Si 1.11 48.26 29.91 68.60 2.05 50.31 16 20 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 C 0.10 4.33 6.22 86.73 0.54 4.87 16 24 C 0.11 2.42 6.09 86.68 0.53 2.95 16 25 C -0.07 -1.01 0.84 -51.13 -0.04 -1.05 16 26 C -0.13 -1.39 7.13 71.98 0.51 -0.88 16 27 C 0.09 1.39 5.72 71.98 0.41 1.80 16 28 O -0.58 -9.33 12.35 -148.98 -1.84 -11.17 16 29 H 0.07 0.56 6.61 -2.39 -0.02 0.55 16 30 H 0.08 0.49 6.98 -2.39 -0.02 0.47 16 31 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.10 2.46 5.48 -2.39 -0.01 2.45 16 33 H 0.09 1.64 7.87 -2.38 -0.02 1.62 16 34 H 0.10 3.78 6.16 -2.39 -0.01 3.76 16 35 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.07 3.31 8.04 -2.39 -0.02 3.29 16 37 H 0.07 3.33 6.91 -2.39 -0.02 3.32 16 38 H 0.37 15.76 9.09 -74.06 -0.67 15.09 16 39 H 0.28 16.42 4.86 -92.70 -0.45 15.97 16 40 H 0.07 2.73 8.07 -2.39 -0.02 2.71 16 41 H 0.07 2.97 7.65 -2.39 -0.02 2.95 16 42 H 0.09 1.69 7.84 -2.39 -0.02 1.67 16 43 H 0.07 1.90 7.20 -2.39 -0.02 1.88 16 44 H 0.07 0.65 6.67 -2.39 -0.02 0.64 16 45 H 0.05 0.75 7.62 -2.39 -0.02 0.73 16 46 H 0.08 0.62 6.89 -2.39 -0.02 0.61 16 47 H 0.03 0.49 8.14 -2.39 -0.02 0.48 16 48 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 49 H 0.40 3.23 9.12 -74.06 -0.68 2.56 16 Total: -1.00 -68.59 379.11 -0.97 -69.56 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: -0.04 Total: 35.78 kcal Atomic # 6 Polarization: 18.52 SS G_CDS: 5.75 Total: 24.27 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -5.10 Total: -97.68 kcal Atomic # 8 Polarization: -78.59 SS G_CDS: -3.65 Total: -82.24 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.05 Total: 50.31 kcal Total: -68.59 -0.97 -69.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327748899.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.926 kcal (2) G-P(sol) polarization free energy of solvation -68.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds