Wall clock time and date at job start Sat Apr 11 2020 06:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 116.99950 * 2 1 4 4 O 1.20826 * 119.99903 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99959 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.44919 * 59.96747 * 5 3 2 7 7 C 1.53045 * 109.46211 * 299.99742 * 5 3 2 8 8 C 1.53193 * 109.31286 * 178.61124 * 7 5 3 9 9 N 1.46929 * 108.77187 * 54.63837 * 8 7 5 10 10 C 1.34781 * 120.62568 * 126.36663 * 9 8 7 11 11 O 1.21357 * 119.99479 * 188.66718 * 10 9 8 12 12 C 1.49444 * 120.00262 * 8.66559 * 10 9 8 13 13 O 1.21348 * 119.99964 * 6.76768 * 12 10 9 14 14 N 1.34777 * 119.99861 * 186.76149 * 12 10 9 15 15 C 1.46505 * 119.99647 * 180.02562 * 14 12 10 16 16 C 1.53002 * 109.47010 * 180.02562 * 15 14 12 17 17 C 1.52995 * 109.47352 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47385 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99868 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00337 * 179.72636 * 18 17 16 21 21 N 1.31515 * 119.99460 * 0.27507 * 20 18 17 22 22 Si 1.86795 * 120.00133 * 180.27354 * 20 18 17 23 23 H 1.48497 * 109.46958 * 60.00117 * 22 20 18 24 24 H 1.48498 * 109.46875 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47370 * 299.99703 * 22 20 18 26 26 C 1.46918 * 118.74235 * 306.64285 * 9 8 7 27 27 C 1.52758 * 109.01063 * 53.30935 * 26 9 8 28 28 H 1.09006 * 109.59455 * 185.54245 * 27 26 9 29 29 C 1.52996 * 109.36117 * 65.49813 * 27 26 9 30 30 H 1.09000 * 109.46875 * 300.00343 * 1 2 3 31 31 H 1.08997 * 109.46769 * 60.00101 * 1 2 3 32 32 H 1.08997 * 109.46898 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.49298 * 58.66510 * 7 5 3 34 34 H 1.08999 * 109.49830 * 298.57133 * 7 5 3 35 35 H 1.09001 * 109.58967 * 294.85380 * 8 7 5 36 36 H 1.08993 * 109.70175 * 174.49169 * 8 7 5 37 37 H 0.96994 * 120.00406 * 0.02562 * 14 12 10 38 38 H 1.09000 * 109.47163 * 60.00883 * 15 14 12 39 39 H 1.08997 * 109.47291 * 300.00348 * 15 14 12 40 40 H 1.09004 * 109.47429 * 59.99975 * 16 15 14 41 41 H 1.09004 * 109.47182 * 300.00454 * 16 15 14 42 42 H 1.09000 * 109.47151 * 60.00293 * 17 16 15 43 43 H 1.09004 * 109.47189 * 300.00256 * 17 16 15 44 44 H 0.97008 * 119.99860 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.59291 * 173.14511 * 26 9 8 46 46 H 1.09006 * 109.58563 * 293.56805 * 26 9 8 47 47 H 1.09000 * 109.47327 * 300.16129 * 29 27 26 48 48 H 1.09002 * 109.47015 * 60.16353 * 29 27 26 49 49 H 1.09007 * 109.47142 * 180.16111 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9560 0.7800 -0.8890 7 6 4.1128 0.5814 1.2507 8 6 5.6437 0.6331 1.2304 9 7 6.0676 2.0322 1.0825 10 6 6.9332 2.5834 1.9563 11 8 7.1549 3.7760 1.9201 12 6 7.6198 1.7260 2.9696 13 8 7.4943 0.5198 2.9288 14 7 8.3784 2.2927 3.9288 15 6 9.0520 1.4521 4.9218 16 6 9.8406 2.3375 5.8887 17 6 10.5446 1.4598 6.9254 18 6 11.3208 2.3320 7.8782 19 1 11.3126 3.4051 7.7567 20 6 12.0367 1.7604 8.9087 21 7 12.0463 0.4537 9.0569 22 14 12.9927 2.8420 10.0943 23 1 12.0589 3.7719 10.7787 24 1 13.6711 1.9903 11.1040 25 1 14.0076 3.6235 9.3429 26 6 5.5253 2.8206 -0.0323 27 6 4.0000 2.7426 -0.0012 28 1 3.5905 3.2418 -0.8795 29 6 3.4827 3.4295 1.2643 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.7841 -0.4578 1.2631 34 1 3.7432 1.0910 2.1404 35 1 6.0181 0.0472 0.3910 36 1 6.0374 0.2287 2.1628 37 1 8.4785 3.2569 3.9616 38 1 9.7339 0.7683 4.4165 39 1 8.3091 0.8799 5.4774 40 1 9.1584 3.0212 6.3941 41 1 10.5835 2.9102 5.3334 42 1 11.2269 0.7765 6.4198 43 1 9.8019 0.8869 7.4808 44 1 12.5496 0.0515 9.7822 45 1 5.8388 3.8596 0.0683 46 1 5.8899 2.4167 -0.9769 47 1 3.8933 2.9306 2.1422 48 1 3.7918 4.4748 1.2626 49 1 2.3945 3.3724 1.2897 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328020294.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:05 Heat of formation + Delta-G solvation = -175.924123 kcal Electronic energy + Delta-G solvation = -29836.834054 eV Core-core repulsion = 25570.410058 eV Total energy + Delta-G solvation = -4266.423996 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.35101 -41.59366 -39.99993 -38.86061 -37.56438 -37.10341 -35.33818 -34.50931 -33.03258 -32.96348 -29.33591 -29.10733 -28.17854 -27.40299 -25.65240 -24.18004 -23.91923 -22.42824 -22.35983 -21.27928 -19.91292 -18.93148 -18.61182 -18.44753 -18.21104 -17.55829 -17.40940 -17.15684 -16.73503 -16.41213 -16.31592 -15.94186 -15.66719 -15.42951 -15.16060 -14.82631 -14.75489 -14.51481 -14.26924 -13.95285 -13.81195 -13.74024 -13.52256 -13.29780 -12.98893 -12.78692 -12.77665 -12.72677 -12.54376 -12.43581 -12.33908 -12.11925 -11.78908 -11.71200 -11.66452 -11.62407 -11.49915 -11.29489 -11.21198 -10.53218 -10.37760 -10.16194 -9.82837 -8.18559 -6.29234 0.29860 1.12597 1.24555 1.42693 1.44934 1.52832 1.72466 2.07724 2.40320 2.46660 3.15272 3.24504 3.41734 3.60777 3.71741 3.89751 4.09799 4.12688 4.14664 4.20376 4.29127 4.30260 4.33019 4.48378 4.54240 4.61171 4.63469 4.67033 4.72454 4.77723 4.81308 4.93489 4.98387 5.01674 5.06841 5.09162 5.16432 5.25212 5.30104 5.43089 5.49624 5.53235 5.72366 5.85588 5.92006 6.18828 6.25402 6.66787 6.70702 6.87410 6.90045 7.39918 8.92934 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023593 B = 0.001796 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.503284 B =15584.911027 C =16005.886832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.467 3.533 4 O -0.529 6.529 5 C -0.073 4.073 6 H 0.142 0.858 7 C -0.122 4.122 8 C 0.072 3.928 9 N -0.575 5.575 10 C 0.511 3.489 11 O -0.542 6.542 12 C 0.502 3.498 13 O -0.529 6.529 14 N -0.686 5.686 15 C 0.128 3.872 16 C -0.107 4.107 17 C 0.025 3.975 18 C -0.544 4.544 19 H 0.063 0.937 20 C -0.001 4.001 21 N -0.932 5.932 22 Si 0.964 3.036 23 H -0.268 1.268 24 H -0.285 1.285 25 H -0.267 1.267 26 C 0.113 3.887 27 C -0.083 4.083 28 H 0.104 0.896 29 C -0.153 4.153 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.129 0.871 33 H 0.108 0.892 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.129 0.871 37 H 0.418 0.582 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.065 0.935 42 H -0.003 1.003 43 H -0.003 1.003 44 H 0.263 0.737 45 H 0.091 0.909 46 H 0.106 0.894 47 H 0.042 0.958 48 H 0.052 0.948 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.988 -0.351 -23.999 32.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.311 3.689 4 O -0.419 6.419 5 C -0.092 4.092 6 H 0.160 0.840 7 C -0.160 4.160 8 C -0.049 4.049 9 N -0.308 5.308 10 C 0.294 3.706 11 O -0.420 6.420 12 C 0.283 3.717 13 O -0.409 6.409 14 N -0.338 5.338 15 C 0.005 3.995 16 C -0.145 4.145 17 C -0.012 4.012 18 C -0.582 4.582 19 H 0.081 0.919 20 C -0.199 4.199 21 N -0.572 5.572 22 Si 0.789 3.211 23 H -0.193 1.193 24 H -0.210 1.210 25 H -0.192 1.192 26 C -0.009 4.009 27 C -0.102 4.102 28 H 0.122 0.878 29 C -0.210 4.210 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.147 0.853 33 H 0.126 0.874 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.146 0.854 37 H 0.255 0.745 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.072 0.928 45 H 0.109 0.891 46 H 0.124 0.876 47 H 0.061 0.939 48 H 0.071 0.929 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.121 -0.427 -23.936 32.595 hybrid contribution 0.289 0.817 0.977 1.306 sum -21.832 0.390 -22.959 31.684 Atomic orbital electron populations 1.23513 0.75074 1.05570 1.02352 1.86508 1.24700 1.32951 1.83576 1.24063 0.92521 0.81123 0.71199 1.90629 1.67914 1.37054 1.46274 1.21223 0.86129 0.98580 1.03260 0.84027 1.21968 0.95325 1.02691 0.96027 1.22905 0.93850 0.80036 1.08064 1.48026 1.41693 1.14278 1.26814 1.19968 0.81041 0.87173 0.82434 1.90751 1.64140 1.15379 1.71745 1.20320 0.80631 0.88105 0.82626 1.90499 1.61405 1.14994 1.73962 1.45940 1.47185 1.12389 1.28260 1.21480 0.95698 0.93398 0.88893 1.21645 0.98529 0.98213 0.96112 1.18926 0.94391 0.94756 0.93164 1.21657 1.29802 0.94011 1.12716 0.91886 1.25961 0.97817 0.96335 0.99742 1.70088 1.43001 1.11297 1.32788 0.85518 0.78810 0.78500 0.78315 1.19267 1.21039 1.19205 1.21885 0.92187 0.97826 0.88955 1.21260 0.94644 0.93704 1.00551 0.87809 1.21987 1.01879 1.00204 0.96972 0.92416 0.91818 0.85313 0.87361 0.92068 0.88434 0.85402 0.74510 0.91515 0.91461 0.91621 0.91600 0.98426 0.98450 0.92796 0.89086 0.87575 0.93886 0.92859 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.36 -4.89 10.44 -51.41 -0.54 -5.42 16 3 C 0.47 7.20 6.97 71.23 0.50 7.70 16 4 O -0.53 -11.07 13.50 21.96 0.30 -10.77 16 5 C -0.07 -0.82 2.37 -11.51 -0.03 -0.85 16 6 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 7 C -0.12 -1.53 4.96 30.67 0.15 -1.37 16 8 C 0.07 1.09 5.99 86.36 0.52 1.61 16 9 N -0.58 -10.50 2.42 -821.32 -1.99 -12.48 16 10 C 0.51 12.57 7.73 87.27 0.67 13.24 16 11 O -0.54 -15.44 15.93 -3.27 -0.05 -15.49 16 12 C 0.50 13.73 7.74 87.27 0.68 14.41 16 13 O -0.53 -15.62 13.18 -3.24 -0.04 -15.67 16 14 N -0.69 -19.22 5.55 -464.41 -2.58 -21.79 16 15 C 0.13 4.18 5.67 86.38 0.49 4.67 16 16 C -0.11 -4.04 5.27 30.59 0.16 -3.88 16 17 C 0.03 1.28 4.97 29.85 0.15 1.43 16 18 C -0.54 -30.10 9.11 25.60 0.23 -29.87 16 19 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 20 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 21 N -0.93 -55.95 13.29 21.45 0.28 -55.67 16 22 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 26 C 0.11 1.55 5.80 86.22 0.50 2.05 16 27 C -0.08 -1.09 2.35 -10.86 -0.03 -1.12 16 28 H 0.10 1.22 8.07 -2.38 -0.02 1.20 16 29 C -0.15 -2.83 8.39 71.98 0.60 -2.23 16 30 H 0.06 0.61 8.13 -2.39 -0.02 0.59 16 31 H 0.06 0.58 8.13 -2.39 -0.02 0.56 16 32 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.11 1.05 8.08 -2.39 -0.02 1.03 16 34 H 0.06 0.98 6.34 -2.39 -0.02 0.97 16 35 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.13 2.61 4.31 -47.76 -0.21 2.41 16 37 H 0.42 10.73 7.96 -92.71 -0.74 9.99 16 38 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 40 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 42 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 43 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 44 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 45 H 0.09 1.53 7.00 -2.39 -0.02 1.51 16 46 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 47 H 0.04 0.88 5.97 -2.39 -0.01 0.87 16 48 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.06 1.36 5.64 -2.38 -0.01 1.34 16 Total: -1.00 -70.53 393.76 3.71 -66.83 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.03 Total: 17.11 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 6.26 Total: 7.68 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -4.28 Total: -89.94 kcal Atomic # 8 Polarization: -47.02 SS G_CDS: -0.34 Total: -47.35 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -70.53 3.71 -66.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328020294.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.099 kcal (2) G-P(sol) polarization free energy of solvation -70.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds