Wall clock time and date at job start Sat Apr 11 2020 06:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47050 * 2 1 4 4 O 1.45199 * 109.47248 * 119.99955 * 2 1 3 5 5 C 1.34231 * 117.00225 * 149.99962 * 4 2 1 6 6 O 1.20824 * 119.99816 * 0.02562 * 5 4 2 7 7 C 1.50696 * 119.99975 * 179.97438 * 5 4 2 8 8 H 1.08997 * 109.47524 * 300.00085 * 7 5 4 9 9 C 1.52998 * 109.46997 * 60.00532 * 7 5 4 10 10 C 1.53004 * 109.46982 * 180.02562 * 7 5 4 11 11 N 1.46498 * 109.47217 * 175.00277 * 10 7 5 12 12 C 1.34781 * 120.00191 * 180.27353 * 11 10 7 13 13 O 1.21341 * 119.99620 * 359.72680 * 12 11 10 14 14 C 1.49447 * 119.99865 * 179.72319 * 12 11 10 15 15 O 1.21346 * 120.00214 * 354.49111 * 14 12 11 16 16 N 1.34776 * 119.99952 * 174.48900 * 14 12 11 17 17 C 1.46494 * 120.00317 * 185.59471 * 16 14 12 18 18 C 1.53002 * 109.47263 * 185.19465 * 17 16 14 19 19 C 1.50701 * 115.54954 * 57.83436 * 18 17 16 20 20 H 1.07996 * 120.00282 * 264.65789 * 19 18 17 21 21 C 1.37886 * 119.99775 * 84.65552 * 19 18 17 22 22 N 1.31516 * 120.00093 * 1.96725 * 21 19 18 23 23 Si 1.86797 * 119.99840 * 181.97017 * 21 19 18 24 24 H 1.48500 * 109.47316 * 90.00082 * 23 21 19 25 25 H 1.48500 * 109.47188 * 209.99930 * 23 21 19 26 26 H 1.48502 * 109.47005 * 329.99706 * 23 21 19 27 27 C 1.52994 * 117.49935 * 272.16491 * 18 17 16 28 28 C 1.53006 * 117.49836 * 203.50385 * 18 17 16 29 29 H 1.08993 * 109.47184 * 299.99861 * 1 2 3 30 30 H 1.09000 * 109.47132 * 60.00495 * 1 2 3 31 31 H 1.09005 * 109.46657 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47353 * 240.00304 * 2 1 3 33 33 H 1.09001 * 109.47390 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47289 * 300.00261 * 3 2 1 35 35 H 1.09007 * 109.47259 * 60.00056 * 3 2 1 36 36 H 1.08994 * 109.47420 * 59.99980 * 9 7 5 37 37 H 1.09007 * 109.46997 * 179.97438 * 9 7 5 38 38 H 1.09001 * 109.47305 * 299.99558 * 9 7 5 39 39 H 1.08994 * 109.47271 * 54.99863 * 10 7 5 40 40 H 1.09004 * 109.47062 * 295.00111 * 10 7 5 41 41 H 0.97002 * 120.00150 * 359.97438 * 11 10 7 42 42 H 0.97002 * 119.99635 * 5.59106 * 16 14 12 43 43 H 1.08998 * 109.47146 * 305.19455 * 17 16 14 44 44 H 1.08995 * 109.47495 * 65.19481 * 17 16 14 45 45 H 0.96993 * 120.00073 * 185.01449 * 22 21 19 46 46 H 1.08997 * 117.49979 * 0.02562 * 27 18 17 47 47 H 1.09009 * 117.49838 * 145.01952 * 27 18 17 48 48 H 1.08996 * 117.49600 * 214.97910 * 28 18 17 49 49 H 1.08993 * 117.50048 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 3.1936 -1.3170 1.0851 6 8 3.8019 -1.2989 0.0413 7 6 3.7599 -2.0487 2.2746 8 1 3.9061 -1.3478 3.0965 9 6 2.7872 -3.1473 2.7080 10 6 5.1028 -2.6763 1.8954 11 7 5.7095 -3.2854 3.0816 12 6 6.9069 -3.8970 2.9874 13 8 7.4799 -3.9475 1.9190 14 6 7.5286 -4.5129 4.1988 15 8 7.0056 -4.3764 5.2852 16 7 8.6704 -5.2200 4.0846 17 6 9.2142 -5.9258 5.2474 18 6 10.5698 -6.5360 4.8855 19 6 11.6130 -5.5616 4.4022 20 1 11.7536 -5.4022 3.3434 21 6 12.3878 -4.8737 5.3119 22 7 12.2434 -5.0963 6.6001 23 14 13.6427 -3.6255 4.7148 24 1 13.0048 -2.2878 4.6217 25 1 14.7771 -3.5674 5.6714 26 1 14.1441 -4.0291 3.3765 27 6 10.5724 -7.9366 4.2700 28 6 11.0488 -7.7324 5.7103 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 2.6411 -3.8482 1.8862 37 1 3.1971 -3.6768 3.5682 38 1 1.8308 -2.6998 2.9784 39 1 5.7661 -1.9056 1.5030 40 1 4.9445 -3.4411 1.1349 41 1 5.2516 -3.2447 3.9357 42 1 9.1319 -5.2615 3.2325 43 1 9.3401 -5.2243 6.0721 44 1 8.5274 -6.7177 5.5458 45 1 12.7352 -4.5617 7.2428 46 1 9.6083 -8.4232 4.1224 47 1 11.3288 -8.1535 3.5156 48 1 12.1185 -7.8149 5.9029 49 1 10.3985 -8.0845 6.5109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329379266.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:25 Heat of formation + Delta-G solvation = -147.817007 kcal Electronic energy + Delta-G solvation = -29249.459989 eV Core-core repulsion = 24984.254810 eV Total energy + Delta-G solvation = -4265.205180 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.13745 -40.23415 -38.33853 -37.47465 -36.72182 -36.03742 -33.84389 -33.42025 -32.48423 -31.97655 -27.78555 -27.69001 -26.65994 -25.49272 -24.96650 -22.95274 -21.64214 -21.16958 -20.69679 -19.99147 -19.53544 -18.17390 -18.04870 -17.06812 -16.52398 -16.27881 -15.99947 -15.80447 -15.18756 -14.96858 -14.76213 -14.60825 -14.51463 -14.29058 -13.96586 -13.71467 -13.47325 -13.21307 -12.90156 -12.85245 -12.78348 -12.74653 -12.52036 -12.22717 -11.95381 -11.81211 -11.63664 -11.61684 -11.37305 -11.33416 -11.00041 -10.98771 -10.92264 -10.68372 -10.52834 -10.26162 -9.64059 -9.29981 -9.25027 -9.08000 -8.53180 -8.42914 -8.12984 -6.09409 -4.18244 1.77783 1.81202 2.04596 2.77606 3.28055 3.35245 3.38169 3.59418 3.95981 4.09344 4.29061 4.30434 4.36701 4.37102 4.43713 4.64797 4.70915 4.91575 5.03815 5.19621 5.19698 5.22713 5.26003 5.27866 5.32590 5.34072 5.43272 5.53813 5.62401 5.66051 5.71858 5.95883 6.08336 6.15277 6.26388 6.39356 6.44603 6.66663 6.74769 6.98624 7.07327 7.17203 7.33498 7.35675 7.47991 7.81029 7.83121 8.13975 8.30654 8.53537 8.83914 9.49655 10.98620 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019064 B = 0.001978 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.370747 B =14152.556999 C =14919.245618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.171 4.171 4 O -0.350 6.350 5 C 0.472 3.528 6 O -0.500 6.500 7 C -0.097 4.097 8 H 0.120 0.880 9 C -0.148 4.148 10 C 0.133 3.867 11 N -0.708 5.708 12 C 0.510 3.490 13 O -0.514 6.514 14 C 0.497 3.503 15 O -0.540 6.540 16 N -0.663 5.663 17 C 0.159 3.841 18 C 0.020 3.980 19 C -0.499 4.499 20 H 0.062 0.938 21 C 0.074 3.926 22 N -0.875 5.875 23 Si 0.890 3.110 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 C -0.211 4.211 28 C -0.141 4.141 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.412 0.588 42 H 0.414 0.586 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.261 0.739 46 H 0.066 0.934 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.700 8.162 -8.977 26.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.229 4.229 4 O -0.267 6.267 5 C 0.314 3.686 6 O -0.387 6.387 7 C -0.116 4.116 8 H 0.137 0.863 9 C -0.205 4.205 10 C 0.009 3.991 11 N -0.364 5.364 12 C 0.291 3.709 13 O -0.388 6.388 14 C 0.276 3.724 15 O -0.419 6.419 16 N -0.312 5.312 17 C 0.037 3.963 18 C 0.020 3.980 19 C -0.536 4.536 20 H 0.080 0.920 21 C -0.131 4.131 22 N -0.511 5.511 23 Si 0.717 3.283 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 C -0.248 4.248 28 C -0.179 4.179 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.249 0.751 42 H 0.250 0.750 43 H 0.097 0.903 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.098 0.902 48 H 0.105 0.895 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.342 8.217 -9.144 26.382 hybrid contribution 0.750 0.908 -0.304 1.216 sum -22.593 9.126 -9.448 26.134 Atomic orbital electron populations 1.21893 0.92233 1.03271 1.03273 1.22781 0.95055 0.92777 0.86943 1.22223 1.02307 0.95114 1.03209 1.86553 1.36377 1.62482 1.41302 1.23335 0.79350 0.76277 0.89649 1.90709 1.59104 1.58246 1.30606 1.21204 0.96008 0.98757 0.95665 0.86251 1.21841 0.98801 0.97133 1.02761 1.21190 0.91560 0.98641 0.87681 1.45640 1.20699 1.57047 1.13019 1.20496 0.81520 0.79212 0.89660 1.90773 1.61564 1.57170 1.29286 1.19838 0.83132 0.81040 0.88396 1.90711 1.63488 1.60224 1.27499 1.45828 1.22052 1.47180 1.16178 1.21169 0.93600 0.94753 0.86796 1.19045 0.92535 0.86706 0.99744 1.20367 1.16862 1.23585 0.92796 0.92015 1.24983 0.96464 0.96669 0.94938 1.69985 1.42228 1.38435 1.00472 0.86625 0.81124 0.81812 0.78718 1.20595 1.21219 1.19731 1.23066 1.00569 1.03712 0.97434 1.22475 1.00553 1.03657 0.91248 0.91283 0.90296 0.91608 0.89595 0.91837 0.90589 0.91423 0.91583 0.90388 0.90631 0.89838 0.89927 0.75122 0.74958 0.90333 0.93877 0.92873 0.91576 0.90204 0.89477 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.57 37.15 0.36 -0.34 16 2 C 0.08 0.56 3.18 -26.73 -0.09 0.47 16 3 C -0.17 -1.07 9.55 37.16 0.35 -0.72 16 4 O -0.35 -2.96 9.78 -39.26 -0.38 -3.35 16 5 C 0.47 4.55 7.23 36.00 0.26 4.81 16 6 O -0.50 -6.28 15.14 -18.75 -0.28 -6.57 16 7 C -0.10 -0.76 2.86 -91.77 -0.26 -1.02 16 8 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 9 C -0.15 -0.94 9.00 37.16 0.33 -0.60 16 10 C 0.13 1.43 4.41 -4.04 -0.02 1.42 16 11 N -0.71 -8.60 5.28 -60.73 -0.32 -8.92 16 12 C 0.51 8.31 7.89 -11.58 -0.09 8.22 16 13 O -0.51 -9.57 16.49 5.50 0.09 -9.48 16 14 C 0.50 9.27 7.88 -11.59 -0.09 9.17 16 15 O -0.54 -10.81 16.46 5.50 0.09 -10.72 16 16 N -0.66 -13.28 5.37 -60.74 -0.33 -13.61 16 17 C 0.16 3.50 5.57 -4.04 -0.02 3.48 16 18 C 0.02 0.48 1.51 -155.66 -0.23 0.24 16 19 C -0.50 -12.91 8.38 -34.44 -0.29 -13.20 16 20 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 21 C 0.07 1.96 5.43 -17.82 -0.10 1.86 16 22 N -0.88 -24.10 12.72 55.43 0.71 -23.40 16 23 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 27 C -0.21 -4.35 9.94 -26.69 -0.27 -4.61 16 28 C -0.14 -3.17 9.26 -26.69 -0.25 -3.42 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.69 7.16 -51.93 -0.37 0.32 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.46 7.18 -51.93 -0.37 0.09 16 38 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 39 H 0.08 1.02 7.95 -51.93 -0.41 0.61 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.41 4.27 7.14 -40.82 -0.29 3.98 16 42 H 0.41 8.24 7.73 -40.82 -0.32 7.93 16 43 H 0.08 1.95 8.09 -51.93 -0.42 1.53 16 44 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 45 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 46 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.08 1.64 8.14 -51.92 -0.42 1.22 16 48 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 49 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 417.21 15.07 6.29 6.29 Total: -1.00 -31.19 417.21 -7.63 -38.82 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -8.07 Total: 9.27 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -0.40 Total: 5.76 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.06 Total: -45.92 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.49 Total: -30.11 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -31.19 -7.63 -38.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329379266.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.997 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds