Wall clock time and date at job start Sat Apr 11 2020 06:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.49912 * 2 1 4 4 C 1.52766 * 109.59270 * 240.04655 * 2 1 3 5 5 N 1.46928 * 109.00878 * 185.53713 * 4 2 1 6 6 C 1.34774 * 120.62929 * 233.58562 * 5 4 2 7 7 O 1.21348 * 119.99919 * 181.60188 * 6 5 4 8 8 C 1.49447 * 120.00328 * 1.59466 * 6 5 4 9 9 O 1.21354 * 119.99527 * 353.03709 * 8 6 5 10 10 N 1.34770 * 120.00148 * 173.03546 * 8 6 5 11 11 C 1.47022 * 125.65057 * 0.02562 * 10 8 6 12 12 C 1.54320 * 107.27444 * 180.79336 * 11 10 8 13 13 C 1.55161 * 102.94148 * 22.19156 * 12 11 10 14 14 O 1.42901 * 111.00082 * 82.57042 * 13 12 11 15 15 C 1.50694 * 111.00585 * 206.38319 * 13 12 11 16 16 H 1.08006 * 119.99661 * 115.18196 * 15 13 12 17 17 C 1.37880 * 120.00515 * 295.18823 * 15 13 12 18 18 N 1.31512 * 119.99973 * 185.12211 * 17 15 13 19 19 Si 1.86800 * 119.99394 * 5.11449 * 17 15 13 20 20 H 1.48506 * 109.46835 * 94.39288 * 19 17 15 21 21 H 1.48507 * 109.47116 * 214.38269 * 19 17 15 22 22 H 1.48489 * 109.47537 * 334.38855 * 19 17 15 23 23 C 1.47430 * 125.64848 * 179.71572 * 10 8 6 24 24 C 1.46929 * 118.73586 * 53.30990 * 5 4 2 25 25 C 1.53195 * 108.77433 * 306.63830 * 24 5 4 26 26 H 1.08993 * 109.49843 * 294.68450 * 25 24 5 27 27 C 1.53004 * 109.49274 * 174.59010 * 25 24 5 28 28 C 1.53037 * 109.49781 * 120.06252 * 2 1 3 29 29 H 1.09009 * 109.45122 * 61.33895 * 28 2 1 30 30 O 1.42898 * 109.46145 * 301.36999 * 28 2 1 31 31 H 1.09000 * 109.47061 * 299.93716 * 1 2 3 32 32 H 1.09001 * 109.46490 * 59.93631 * 1 2 3 33 33 H 1.08998 * 109.46870 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.50940 * 65.65334 * 4 2 1 35 35 H 1.08993 * 109.43005 * 305.37166 * 4 2 1 36 36 H 1.08999 * 109.88412 * 300.21518 * 11 10 8 37 37 H 1.09003 * 109.87703 * 61.37520 * 11 10 8 38 38 H 1.08995 * 110.72261 * 140.55652 * 12 11 10 39 39 H 1.09007 * 110.72066 * 263.65653 * 12 11 10 40 40 H 0.96699 * 113.99955 * 179.97438 * 14 13 12 41 41 H 0.96999 * 119.99359 * 179.97438 * 18 17 15 42 42 H 1.09002 * 110.36693 * 274.97675 * 23 10 8 43 43 H 1.08997 * 110.36512 * 37.29853 * 23 10 8 44 44 H 1.08995 * 109.58980 * 66.43324 * 24 5 4 45 45 H 1.09001 * 109.58124 * 186.86011 * 24 5 4 46 46 H 1.08999 * 109.47159 * 60.00600 * 27 25 24 47 47 H 1.09003 * 109.46804 * 180.02562 * 27 25 24 48 48 H 1.09000 * 109.47260 * 299.99642 * 27 25 24 49 49 H 0.96699 * 113.99693 * 59.93188 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0423 -0.7186 -1.2470 5 7 3.5054 -0.8283 -1.1690 6 6 4.2820 -0.3845 -2.1771 7 8 5.4876 -0.5072 -2.1135 8 6 3.6584 0.2586 -3.3733 9 8 2.4512 0.2684 -3.4967 10 7 4.4368 0.8277 -4.3150 11 6 5.9056 0.8866 -4.2917 12 6 6.3539 1.6460 -5.5581 13 6 5.0920 2.4657 -5.9367 14 8 5.0173 3.6722 -5.1746 15 6 5.0629 2.7608 -7.4142 16 1 4.2824 2.3431 -8.0330 17 6 6.0325 3.5639 -7.9762 18 7 5.9512 3.9038 -9.2440 19 14 7.4615 4.1692 -6.9365 20 1 8.6154 3.2482 -7.0968 21 1 7.8517 5.5327 -7.3773 22 1 7.0538 4.2082 -5.5092 23 6 3.9566 1.4885 -5.5423 24 6 4.1059 -1.4256 0.0317 25 6 3.5708 -0.6939 1.2667 26 1 3.9155 0.3400 1.2547 27 6 4.0798 -1.3879 2.5317 28 6 2.0408 -0.7227 1.2486 29 1 1.6972 -1.7571 1.2353 30 8 1.5385 -0.0691 2.4159 31 1 -0.3633 0.5129 0.8905 32 1 -0.3632 0.5148 -0.8895 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7653 -0.1497 -2.1345 35 1 1.6033 -1.7149 -1.2973 36 1 6.2412 1.4192 -3.4018 37 1 6.3172 -0.1227 -4.2994 38 1 7.1909 2.3076 -5.3350 39 1 6.6168 0.9484 -6.3533 40 1 4.2451 4.2179 -5.3769 41 1 6.6333 4.4691 -9.6392 42 1 3.7973 0.7536 -6.3314 43 1 3.0363 2.0373 -5.3424 44 1 3.8387 -2.4808 0.0877 45 1 5.1902 -1.3229 -0.0126 46 1 5.1696 -1.3697 2.5427 47 1 3.6984 -0.8673 3.4101 48 1 3.7335 -2.4214 2.5435 49 1 0.5733 -0.0496 2.4711 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330451584.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:45 Heat of formation + Delta-G solvation = -138.125998 kcal Electronic energy + Delta-G solvation = -31619.757645 eV Core-core repulsion = 27354.972699 eV Total energy + Delta-G solvation = -4264.784946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.09532 -39.60627 -38.39550 -37.71348 -36.06165 -34.64729 -33.97032 -32.70000 -32.47218 -30.53767 -28.56745 -27.47860 -27.06614 -26.23918 -25.14131 -23.12856 -22.04676 -21.22913 -20.44390 -19.85694 -19.28704 -17.80891 -17.56625 -17.07919 -16.91725 -16.18866 -15.91571 -15.57667 -15.19122 -14.88971 -14.66282 -14.55982 -14.24504 -14.05000 -13.67428 -13.49245 -13.27005 -13.12474 -12.90492 -12.68957 -12.66726 -12.58902 -12.39925 -12.15459 -11.88650 -11.78283 -11.75613 -11.61619 -11.38992 -11.16279 -11.09575 -10.91063 -10.65289 -10.57494 -10.40043 -10.16589 -10.01369 -9.06537 -8.96595 -8.91308 -8.80713 -8.62313 -8.25032 -6.28043 -4.40954 1.51951 2.30755 3.27379 3.28181 3.39618 3.45265 3.58385 3.85462 4.17850 4.31446 4.37531 4.47324 4.58829 4.70920 4.91175 5.00917 5.05669 5.08802 5.13357 5.19601 5.27731 5.30653 5.33502 5.40712 5.49403 5.58765 5.60245 5.67963 5.69068 5.81341 5.83800 5.88154 5.94462 5.99533 6.06642 6.11576 6.19156 6.33182 6.48662 6.60011 6.63982 6.99939 7.04889 7.31281 7.36579 7.52271 7.78470 8.10913 8.11922 8.66887 8.84076 9.34495 10.81955 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021936 B = 0.002840 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.150012 B = 9855.564126 C =10341.447695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 H 0.081 0.919 4 C 0.053 3.947 5 N -0.586 5.586 6 C 0.512 3.488 7 O -0.515 6.515 8 C 0.516 3.484 9 O -0.527 6.527 10 N -0.568 5.568 11 C 0.109 3.891 12 C -0.131 4.131 13 C 0.218 3.782 14 O -0.570 6.570 15 C -0.553 4.553 16 H 0.080 0.920 17 C 0.090 3.910 18 N -0.884 5.884 19 Si 0.869 3.131 20 H -0.285 1.285 21 H -0.297 1.297 22 H -0.221 1.221 23 C 0.089 3.911 24 C 0.114 3.886 25 C -0.098 4.098 26 H 0.082 0.918 27 C -0.139 4.139 28 C 0.114 3.886 29 H 0.055 0.945 30 O -0.564 6.564 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.166 0.834 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.366 0.634 41 H 0.268 0.732 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.100 0.900 46 H 0.057 0.943 47 H 0.068 0.932 48 H 0.054 0.946 49 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.823 -10.569 20.306 24.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 H 0.099 0.901 4 C -0.067 4.067 5 N -0.320 5.320 6 C 0.295 3.705 7 O -0.390 6.390 8 C 0.300 3.700 9 O -0.408 6.408 10 N -0.298 5.298 11 C -0.013 4.013 12 C -0.169 4.169 13 C 0.177 3.823 14 O -0.376 6.376 15 C -0.591 4.591 16 H 0.098 0.902 17 C -0.115 4.115 18 N -0.520 5.520 19 Si 0.696 3.304 20 H -0.211 1.211 21 H -0.224 1.224 22 H -0.144 1.144 23 C -0.032 4.032 24 C -0.008 4.008 25 C -0.118 4.118 26 H 0.100 0.900 27 C -0.197 4.197 28 C 0.055 3.945 29 H 0.073 0.927 30 O -0.370 6.370 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.182 0.818 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.213 0.787 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.118 0.882 46 H 0.076 0.924 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -6.534 -10.738 20.526 24.069 hybrid contribution -0.342 0.364 0.039 0.501 sum -6.876 -10.374 20.565 24.038 Atomic orbital electron populations 1.21755 0.94013 1.02103 1.02713 1.22134 0.96707 1.01426 0.95501 0.90075 1.23313 0.77697 1.02769 1.02963 1.47938 1.07895 1.59060 1.17087 1.20139 0.86773 0.79419 0.84168 1.90741 1.13804 1.55370 1.79122 1.19624 0.86352 0.80358 0.83690 1.90225 1.13552 1.60816 1.76253 1.48475 1.08739 1.51819 1.20760 1.22259 0.78297 1.00959 0.99812 1.23118 0.99185 0.98807 0.95793 1.20093 0.89257 0.81704 0.91217 1.86511 1.49451 1.34952 1.66702 1.21095 1.14516 1.33270 0.90197 0.90183 1.24927 0.97835 0.94101 0.94671 1.69929 1.34667 1.34916 1.12481 0.87142 0.81506 0.77580 0.84138 1.21139 1.22374 1.14419 1.23263 0.99746 0.96435 0.83751 1.21787 1.00212 0.96508 0.82329 1.21483 0.93647 1.01523 0.95121 0.90006 1.21677 1.00881 1.00185 0.96985 1.21877 0.93707 0.94724 0.84200 0.92674 1.86498 1.26196 1.80968 1.43334 0.92284 0.91314 0.92405 0.81794 0.91713 0.91050 0.90847 0.90416 0.89184 0.78664 0.92257 0.90048 0.90567 0.90934 0.88151 0.92366 0.91342 0.92702 0.77695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.86 37.16 0.33 -0.73 16 2 C -0.14 -1.30 2.61 -90.72 -0.24 -1.54 16 3 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.05 0.60 5.48 -3.93 -0.02 0.58 16 5 N -0.59 -7.44 2.98 -173.54 -0.52 -7.96 16 6 C 0.51 8.04 7.71 -11.59 -0.09 7.95 16 7 O -0.52 -8.85 13.60 5.50 0.07 -8.77 16 8 C 0.52 8.89 7.83 -11.59 -0.09 8.80 16 9 O -0.53 -9.22 13.28 5.49 0.07 -9.15 16 10 N -0.57 -10.37 3.33 -171.03 -0.57 -10.94 16 11 C 0.11 1.96 5.49 -3.07 -0.02 1.95 16 12 C -0.13 -2.63 4.85 -24.90 -0.12 -2.75 16 13 C 0.22 4.69 0.70 -89.63 -0.06 4.62 16 14 O -0.57 -12.13 10.37 -35.23 -0.37 -12.50 16 15 C -0.55 -14.12 8.82 -34.44 -0.30 -14.43 16 16 H 0.08 2.21 8.03 -52.48 -0.42 1.79 16 17 C 0.09 2.43 5.47 -17.82 -0.10 2.34 16 18 N -0.88 -25.50 13.96 55.43 0.77 -24.73 16 19 Si 0.87 20.57 24.44 -169.99 -4.15 16.41 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.30 -7.21 7.11 56.52 0.40 -6.80 16 22 H -0.22 -5.10 4.89 56.52 0.28 -4.83 16 23 C 0.09 1.73 6.08 -2.53 -0.02 1.71 16 24 C 0.11 1.18 5.71 -3.71 -0.02 1.16 16 25 C -0.10 -0.94 2.62 -90.50 -0.24 -1.18 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 27 C -0.14 -1.12 9.04 37.16 0.34 -0.79 16 28 C 0.11 0.99 2.40 -26.69 -0.06 0.93 16 29 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 30 O -0.56 -4.90 12.54 -35.23 -0.44 -5.34 16 31 H 0.06 0.33 6.76 -51.93 -0.35 -0.02 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.17 2.23 3.79 -56.97 -0.22 2.02 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.30 7.76 -51.93 -0.40 0.90 16 37 H 0.07 1.24 7.54 -51.93 -0.39 0.85 16 38 H 0.08 1.60 4.94 -51.93 -0.26 1.34 16 39 H 0.09 1.77 8.04 -51.93 -0.42 1.35 16 40 H 0.37 6.85 9.06 45.56 0.41 7.27 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.08 1.58 8.03 -51.93 -0.42 1.16 16 43 H 0.08 1.44 8.04 -51.93 -0.42 1.03 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.10 1.14 7.01 -51.93 -0.36 0.77 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.59 7.65 -51.93 -0.40 0.19 16 48 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.38 1.96 7.33 45.56 0.33 2.30 16 LS Contribution 372.85 15.07 5.62 5.62 Total: -1.00 -30.64 372.85 -6.59 -37.23 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -6.37 Total: 11.50 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -0.71 Total: 8.63 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: -0.31 Total: -43.63 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -0.66 Total: -35.76 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.15 Total: 16.41 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.64 -6.59 -37.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330451584.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.900 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds