Wall clock time and date at job start Sat Apr 11 2020 06:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.53008 * 109.46774 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.46734 * 179.97438 * 6 5 4 8 8 C 1.36943 * 119.99762 * 179.97438 * 7 6 5 9 9 H 1.07994 * 119.99644 * 0.02562 * 8 7 6 10 10 C 1.38812 * 119.99581 * 180.02562 * 8 7 6 11 11 N 1.31621 * 119.99394 * 180.02562 * 10 8 7 12 12 Si 1.86793 * 120.00467 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47318 * 89.99708 * 12 10 8 14 14 H 1.48501 * 109.47211 * 209.99716 * 12 10 8 15 15 H 1.48500 * 109.47329 * 329.99909 * 12 10 8 16 16 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 17 17 C 1.34778 * 119.99771 * 274.99826 * 16 2 1 18 18 O 1.21279 * 120.00041 * 0.02562 * 17 16 2 19 19 C 1.50703 * 119.99935 * 180.02562 * 17 16 2 20 20 H 1.08999 * 109.47030 * 300.00189 * 19 17 16 21 21 C 1.53001 * 109.47311 * 60.00091 * 19 17 16 22 22 C 1.50699 * 109.47042 * 180.02562 * 19 17 16 23 23 C 1.38423 * 120.02472 * 299.72495 * 22 19 17 24 24 F 1.35097 * 120.01058 * 359.97359 * 23 22 19 25 25 C 1.38474 * 119.97019 * 179.70522 * 23 22 19 26 26 C 1.38204 * 120.02992 * 0.59193 * 25 23 22 27 27 C 1.38213 * 120.04788 * 359.68276 * 26 25 23 28 28 C 1.38421 * 120.02587 * 120.00295 * 22 19 17 29 29 F 1.35099 * 120.01351 * 359.97292 * 28 22 19 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 32 32 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 33 33 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 34 34 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 35 35 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 36 36 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 37 37 H 1.09000 * 109.47044 * 300.00132 * 6 5 4 38 38 H 1.09001 * 109.47171 * 60.00211 * 6 5 4 39 39 H 0.97003 * 120.00464 * 0.02562 * 7 6 5 40 40 H 0.97005 * 119.99558 * 180.02562 * 11 10 8 41 41 H 0.96998 * 120.00630 * 95.00428 * 16 2 1 42 42 H 1.09000 * 109.47297 * 179.97438 * 21 19 17 43 43 H 1.09005 * 109.46706 * 300.00068 * 21 19 17 44 44 H 1.08999 * 109.46994 * 60.00075 * 21 19 17 45 45 H 1.08001 * 119.98081 * 180.27687 * 25 23 22 46 46 H 1.07998 * 119.97498 * 179.70661 * 26 25 23 47 47 H 1.08006 * 119.98509 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3341 -2.5632 7 7 5.5349 -1.2302 -2.6251 8 6 6.2187 -1.8044 -3.6633 9 1 5.6816 -2.3335 -4.4366 10 6 7.6021 -1.7064 -3.7217 11 7 8.2593 -2.2578 -4.7199 12 14 8.5310 -0.7919 -2.3838 13 1 8.8922 -1.7373 -1.2972 14 1 9.7669 -0.1995 -2.9556 15 1 7.6725 0.2883 -1.8349 16 7 2.0183 -0.6906 1.1962 17 6 2.1470 -0.0182 2.3571 18 8 1.8581 1.1584 2.4117 19 6 2.6498 -0.7285 3.5875 20 1 1.9776 -1.5508 3.8325 21 6 4.0525 -1.2785 3.3215 22 6 2.6997 0.2397 4.7413 23 6 3.4967 1.3688 4.6639 24 9 4.2307 1.6031 3.5542 25 6 3.5371 2.2608 5.7223 26 6 2.7916 2.0179 6.8604 27 6 1.9998 0.8879 6.9410 28 6 1.9532 -0.0024 5.8815 29 9 1.1788 -1.1066 5.9603 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.7517 -1.7715 -1.2055 34 1 1.6055 -0.2618 -2.1369 35 1 3.8533 0.4369 -1.3572 36 1 3.9995 -1.0728 -0.4258 37 1 3.7865 -2.3844 -2.5199 38 1 3.6403 -0.8743 -3.4507 39 1 6.0173 -0.7553 -1.9303 40 1 9.2261 -2.1896 -4.7605 41 1 2.2490 -1.6318 1.1527 42 1 4.4164 -1.7919 4.2116 43 1 4.0159 -1.9789 2.4870 44 1 4.7247 -0.4562 3.0765 45 1 4.1554 3.1441 5.6603 46 1 2.8274 2.7118 7.6872 47 1 1.4173 0.6993 7.8307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330866252.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:49 Heat of formation + Delta-G solvation = -104.575878 kcal Electronic energy + Delta-G solvation = -29864.765096 eV Core-core repulsion = 25490.347477 eV Total energy + Delta-G solvation = -4374.417619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.40139 -49.18233 -40.38222 -38.98911 -36.91879 -35.02372 -34.66880 -32.56828 -31.30188 -30.64133 -29.99858 -29.42698 -25.95343 -25.19173 -23.32550 -23.17994 -22.42283 -21.00270 -20.85156 -20.36398 -18.46365 -18.03560 -17.49944 -17.03237 -16.70423 -16.16367 -15.99972 -15.85514 -15.53976 -15.13413 -14.80401 -14.72643 -14.60704 -14.21652 -14.10452 -13.87546 -13.67282 -13.10806 -13.06959 -12.85961 -12.69034 -12.50851 -12.45364 -12.32100 -12.21808 -12.20430 -11.86454 -11.69348 -11.27016 -11.26545 -10.97130 -10.89609 -10.52439 -10.39561 -10.10170 -9.93231 -9.58188 -9.25475 -9.17058 -9.06752 -8.87952 -7.21565 -5.75931 -3.11122 0.57773 0.64975 2.49046 2.85904 3.15194 3.38548 3.42321 3.46222 3.55034 3.92386 4.06339 4.23199 4.40138 4.53792 4.60430 4.69497 4.74688 4.78950 4.86172 4.97923 5.08220 5.28239 5.35322 5.39615 5.41825 5.43270 5.53060 5.54153 5.55187 5.59800 5.65995 5.70799 5.77561 5.85985 5.87695 5.93334 6.01621 6.09521 6.13282 6.29781 6.39401 6.42272 6.75846 6.79324 7.35352 8.00830 8.07835 8.43499 9.22882 9.95546 10.15610 11.42596 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.002756 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.812831 B =10157.389596 C =11425.139722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.089 0.911 4 C -0.122 4.122 5 C -0.129 4.129 6 C 0.157 3.843 7 N -0.758 5.758 8 C -0.244 4.244 9 H 0.090 0.910 10 C 0.003 3.997 11 N -0.935 5.935 12 Si 0.885 3.115 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.277 1.277 16 N -0.718 5.718 17 C 0.522 3.478 18 O -0.532 6.532 19 C -0.072 4.072 20 H 0.113 0.887 21 C -0.150 4.150 22 C -0.140 4.140 23 C 0.164 3.836 24 F -0.119 7.119 25 C -0.168 4.168 26 C -0.061 4.061 27 C -0.169 4.169 28 C 0.134 3.866 29 F -0.131 7.131 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.401 0.599 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.143 0.857 46 H 0.143 0.857 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.715 5.565 25.923 31.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.107 0.893 4 C -0.161 4.161 5 C -0.167 4.167 6 C 0.030 3.970 7 N -0.403 5.403 8 C -0.374 4.374 9 H 0.107 0.893 10 C -0.193 4.193 11 N -0.583 5.583 12 Si 0.715 3.285 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.203 1.203 16 N -0.370 5.370 17 C 0.307 3.693 18 O -0.408 6.408 19 C -0.093 4.093 20 H 0.130 0.870 21 C -0.208 4.208 22 C -0.142 4.142 23 C 0.144 3.856 24 F -0.097 7.097 25 C -0.187 4.187 26 C -0.079 4.079 27 C -0.188 4.188 28 C 0.115 3.885 29 F -0.109 7.109 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.193 0.807 40 H 0.069 0.931 41 H 0.236 0.764 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.161 0.839 46 H 0.161 0.839 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.882 6.261 25.669 31.354 hybrid contribution 0.856 -0.029 0.633 1.065 sum -16.026 6.233 26.301 31.423 Atomic orbital electron populations 1.22165 0.95379 1.02039 1.02419 1.21058 0.93669 0.97783 0.83771 0.89335 1.21839 0.96560 1.00968 0.96717 1.21786 0.94132 1.01393 0.99431 1.20627 0.84864 0.97055 0.94458 1.42738 1.01761 1.66970 1.28865 1.19078 0.89900 1.27259 1.01144 0.89259 1.24682 0.96198 1.00555 0.97852 1.69709 1.07291 1.49428 1.31898 0.86535 0.79748 0.80010 0.82198 1.21075 1.21692 1.20318 1.46031 1.67316 1.14144 1.09501 1.20228 0.77461 0.87261 0.84310 1.90707 1.49619 1.15655 1.84822 1.20178 1.00775 0.97417 0.90978 0.86952 1.21900 0.93541 1.02198 1.03122 1.19352 1.00941 0.97921 0.95989 1.17109 0.91406 0.93596 0.83449 1.91546 1.74017 1.93857 1.50310 1.21236 1.03341 1.00678 0.93421 1.20841 0.93791 0.96041 0.97250 1.21135 1.03169 0.95518 0.98977 1.17139 0.92119 0.84875 0.94416 1.91507 1.72486 1.50510 1.96412 0.92473 0.92396 0.91492 0.91218 0.90074 0.91998 0.92108 0.95700 0.95691 0.80715 0.93081 0.76441 0.91040 0.90770 0.90848 0.83944 0.83921 0.84010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.48 37.16 0.35 -1.22 16 2 C 0.14 1.56 2.57 -67.93 -0.17 1.39 16 3 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 4 C -0.12 -1.36 4.75 -26.73 -0.13 -1.49 16 5 C -0.13 -1.91 5.22 -26.72 -0.14 -2.05 16 6 C 0.16 3.01 6.26 -4.04 -0.03 2.98 16 7 N -0.76 -18.42 5.41 -59.91 -0.32 -18.75 16 8 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16 9 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 10 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 11 N -0.94 -29.78 13.97 55.49 0.78 -29.00 16 12 Si 0.88 22.53 27.74 -169.99 -4.71 17.82 16 13 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 15 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 16 N -0.72 -7.56 4.42 -53.80 -0.24 -7.80 16 17 C 0.52 6.43 6.57 -10.98 -0.07 6.35 16 18 O -0.53 -8.35 14.25 5.56 0.08 -8.27 16 19 C -0.07 -0.73 2.79 -92.92 -0.26 -0.99 16 20 H 0.11 0.95 7.13 -51.93 -0.37 0.58 16 21 C -0.15 -1.39 8.88 37.16 0.33 -1.06 16 22 C -0.14 -1.50 4.40 -104.49 -0.46 -1.96 16 23 C 0.16 1.85 6.14 -39.43 -0.24 1.61 16 24 F -0.12 -1.60 13.82 2.25 0.03 -1.57 16 25 C -0.17 -1.44 10.02 -39.51 -0.40 -1.83 16 26 C -0.06 -0.40 10.04 -39.60 -0.40 -0.80 16 27 C -0.17 -1.23 10.02 -39.50 -0.40 -1.63 16 28 C 0.13 1.27 7.25 -39.43 -0.29 0.98 16 29 F -0.13 -1.26 16.19 2.25 0.04 -1.22 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.88 7.75 -51.93 -0.40 0.48 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.36 8.59 5.53 -40.82 -0.23 8.37 16 40 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 41 H 0.40 3.40 8.02 -40.82 -0.33 3.07 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.61 7.56 -51.93 -0.39 0.22 16 44 H 0.07 0.81 6.29 -51.93 -0.33 0.48 16 45 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 46 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 47 H 0.14 0.70 8.06 -52.48 -0.42 0.27 16 LS Contribution 390.57 15.07 5.89 5.89 Total: -1.00 -35.19 390.57 -8.12 -43.31 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -7.10 Total: 6.54 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -2.55 Total: -6.95 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.21 Total: -55.54 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.08 Total: -8.27 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.07 Total: -2.79 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.71 Total: 17.82 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.19 -8.12 -43.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330866252.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.270 kcal (2) G-P(sol) polarization free energy of solvation -35.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds