Wall clock time and date at job start Sat Apr 11 2020 06:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.53008 * 109.46774 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.46734 * 179.97438 * 6 5 4 8 8 C 1.36943 * 119.99762 * 179.97438 * 7 6 5 9 9 H 1.07994 * 119.99644 * 0.02562 * 8 7 6 10 10 C 1.38812 * 119.99581 * 180.02562 * 8 7 6 11 11 N 1.31621 * 119.99394 * 180.02562 * 10 8 7 12 12 Si 1.86793 * 120.00467 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47318 * 89.99708 * 12 10 8 14 14 H 1.48501 * 109.47211 * 209.99716 * 12 10 8 15 15 H 1.48500 * 109.47329 * 329.99909 * 12 10 8 16 16 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 17 17 C 1.34778 * 119.99771 * 274.99826 * 16 2 1 18 18 O 1.21279 * 120.00041 * 0.02562 * 17 16 2 19 19 C 1.50703 * 119.99935 * 180.02562 * 17 16 2 20 20 H 1.08999 * 109.47030 * 300.00189 * 19 17 16 21 21 C 1.53001 * 109.47311 * 60.00091 * 19 17 16 22 22 C 1.50699 * 109.47042 * 180.02562 * 19 17 16 23 23 C 1.38423 * 120.02472 * 299.72495 * 22 19 17 24 24 F 1.35097 * 120.01058 * 359.97359 * 23 22 19 25 25 C 1.38474 * 119.97019 * 179.70522 * 23 22 19 26 26 C 1.38204 * 120.02992 * 0.59193 * 25 23 22 27 27 C 1.38213 * 120.04788 * 359.68276 * 26 25 23 28 28 C 1.38421 * 120.02587 * 120.00295 * 22 19 17 29 29 F 1.35099 * 120.01351 * 359.97292 * 28 22 19 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 32 32 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 33 33 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 34 34 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 35 35 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 36 36 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 37 37 H 1.09000 * 109.47044 * 300.00132 * 6 5 4 38 38 H 1.09001 * 109.47171 * 60.00211 * 6 5 4 39 39 H 0.97003 * 120.00464 * 0.02562 * 7 6 5 40 40 H 0.97005 * 119.99558 * 180.02562 * 11 10 8 41 41 H 0.96998 * 120.00630 * 95.00428 * 16 2 1 42 42 H 1.09000 * 109.47297 * 179.97438 * 21 19 17 43 43 H 1.09005 * 109.46706 * 300.00068 * 21 19 17 44 44 H 1.08999 * 109.46994 * 60.00075 * 21 19 17 45 45 H 1.08001 * 119.98081 * 180.27687 * 25 23 22 46 46 H 1.07998 * 119.97498 * 179.70661 * 26 25 23 47 47 H 1.08006 * 119.98509 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3341 -2.5632 7 7 5.5349 -1.2302 -2.6251 8 6 6.2187 -1.8044 -3.6633 9 1 5.6816 -2.3335 -4.4366 10 6 7.6021 -1.7064 -3.7217 11 7 8.2593 -2.2578 -4.7199 12 14 8.5310 -0.7919 -2.3838 13 1 8.8922 -1.7373 -1.2972 14 1 9.7669 -0.1995 -2.9556 15 1 7.6725 0.2883 -1.8349 16 7 2.0183 -0.6906 1.1962 17 6 2.1470 -0.0182 2.3571 18 8 1.8581 1.1584 2.4117 19 6 2.6498 -0.7285 3.5875 20 1 1.9776 -1.5508 3.8325 21 6 4.0525 -1.2785 3.3215 22 6 2.6997 0.2397 4.7413 23 6 3.4967 1.3688 4.6639 24 9 4.2307 1.6031 3.5542 25 6 3.5371 2.2608 5.7223 26 6 2.7916 2.0179 6.8604 27 6 1.9998 0.8879 6.9410 28 6 1.9532 -0.0024 5.8815 29 9 1.1788 -1.1066 5.9603 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.7517 -1.7715 -1.2055 34 1 1.6055 -0.2618 -2.1369 35 1 3.8533 0.4369 -1.3572 36 1 3.9995 -1.0728 -0.4258 37 1 3.7865 -2.3844 -2.5199 38 1 3.6403 -0.8743 -3.4507 39 1 6.0173 -0.7553 -1.9303 40 1 9.2261 -2.1896 -4.7605 41 1 2.2490 -1.6318 1.1527 42 1 4.4164 -1.7919 4.2116 43 1 4.0159 -1.9789 2.4870 44 1 4.7247 -0.4562 3.0765 45 1 4.1554 3.1441 5.6603 46 1 2.8274 2.7118 7.6872 47 1 1.4173 0.6993 7.8307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330866252.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:48 Heat of formation + Delta-G solvation = -126.688480 kcal Electronic energy + Delta-G solvation = -29865.723970 eV Core-core repulsion = 25490.347477 eV Total energy + Delta-G solvation = -4375.376493 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.08402 -50.02768 -41.26622 -39.67812 -38.05649 -36.64688 -35.46444 -34.20841 -32.76351 -31.28638 -31.23201 -30.23471 -27.40107 -25.98782 -24.56980 -23.90602 -23.63263 -22.53041 -21.77846 -21.23839 -19.63534 -19.16229 -18.81745 -17.79575 -17.60172 -16.91579 -16.75380 -16.61572 -16.55677 -16.34702 -16.09863 -15.82703 -15.78610 -15.46470 -15.06588 -14.98588 -14.82612 -14.59941 -13.97984 -13.79030 -13.67268 -13.53647 -13.48735 -13.32173 -13.14930 -13.06624 -12.90428 -12.85534 -12.54916 -12.50873 -12.12850 -12.05716 -11.97760 -11.88273 -11.75125 -11.56686 -10.98877 -10.87773 -10.10395 -9.91003 -9.73627 -9.31504 -8.05406 -5.38666 -0.05935 -0.00503 1.35827 1.38386 1.45963 1.56967 2.10195 2.44538 2.45752 2.88476 3.22638 3.26038 3.40289 3.47042 3.57061 3.79706 3.86244 3.91732 4.03734 4.07587 4.14542 4.20203 4.22395 4.37070 4.53751 4.61718 4.62424 4.69705 4.79208 4.81896 4.83299 4.86585 4.88692 4.97786 5.01231 5.05032 5.10444 5.15622 5.19637 5.27920 5.33645 5.40302 5.56295 5.73609 5.77447 6.19400 6.50530 7.05667 7.20021 7.82997 8.00907 9.16196 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.002756 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.812831 B =10157.389596 C =11425.139722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.145 3.855 3 H 0.063 0.937 4 C -0.110 4.110 5 C -0.117 4.117 6 C 0.153 3.847 7 N -0.763 5.763 8 C -0.237 4.237 9 H 0.058 0.942 10 C -0.064 4.064 11 N -0.983 5.983 12 Si 0.955 3.045 13 H -0.274 1.274 14 H -0.294 1.294 15 H -0.258 1.258 16 N -0.711 5.711 17 C 0.518 3.482 18 O -0.571 6.571 19 C -0.069 4.069 20 H 0.128 0.872 21 C -0.146 4.146 22 C -0.157 4.157 23 C 0.129 3.871 24 F -0.141 7.141 25 C -0.172 4.172 26 C -0.051 4.051 27 C -0.161 4.161 28 C 0.118 3.882 29 F -0.134 7.134 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.031 0.969 38 H 0.022 0.978 39 H 0.364 0.636 40 H 0.259 0.741 41 H 0.413 0.587 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.052 0.948 45 H 0.156 0.844 46 H 0.182 0.818 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.926 5.919 28.784 34.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.040 3.960 3 H 0.082 0.918 4 C -0.149 4.149 5 C -0.155 4.155 6 C 0.027 3.973 7 N -0.408 5.408 8 C -0.368 4.368 9 H 0.076 0.924 10 C -0.256 4.256 11 N -0.634 5.634 12 Si 0.782 3.218 13 H -0.200 1.200 14 H -0.221 1.221 15 H -0.183 1.183 16 N -0.363 5.363 17 C 0.305 3.695 18 O -0.450 6.450 19 C -0.090 4.090 20 H 0.146 0.854 21 C -0.204 4.204 22 C -0.159 4.159 23 C 0.110 3.890 24 F -0.120 7.120 25 C -0.191 4.191 26 C -0.068 4.068 27 C -0.180 4.180 28 C 0.099 3.901 29 F -0.113 7.113 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.049 0.951 38 H 0.040 0.960 39 H 0.197 0.803 40 H 0.067 0.933 41 H 0.249 0.751 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.071 0.929 45 H 0.174 0.826 46 H 0.199 0.801 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -18.141 6.594 28.546 34.459 hybrid contribution 1.138 -0.155 -0.275 1.181 sum -17.003 6.440 28.271 33.613 Atomic orbital electron populations 1.22089 0.93996 1.02987 1.02161 1.20957 0.94649 0.96514 0.83836 0.91831 1.21750 0.93681 1.02351 0.97090 1.21657 0.96619 0.99966 0.97265 1.20842 0.82050 0.97933 0.96494 1.42808 1.03824 1.66536 1.27678 1.19080 0.90191 1.26212 1.01280 0.92416 1.25519 0.97298 1.02190 1.00577 1.69886 1.07524 1.51588 1.34374 0.85405 0.78060 0.79148 0.79152 1.20015 1.22071 1.18262 1.46001 1.66664 1.14636 1.08976 1.20649 0.76809 0.86903 0.85186 1.90681 1.51386 1.17387 1.85499 1.20193 1.01277 0.97570 0.89944 0.85401 1.21882 0.92720 1.01638 1.04141 1.19489 1.01551 0.98186 0.96688 1.17522 0.92613 0.95048 0.83816 1.91480 1.74741 1.94128 1.51613 1.21558 1.03622 1.00568 0.93336 1.21294 0.92089 0.96128 0.97329 1.21546 1.02644 0.94768 0.99047 1.17361 0.92404 0.85446 0.94906 1.91492 1.72574 1.50774 1.96444 0.90860 0.94022 0.90404 0.89224 0.89173 0.93116 0.91621 0.95097 0.95980 0.80310 0.93268 0.75065 0.89765 0.89690 0.92905 0.82624 0.80090 0.81228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.48 71.98 0.68 -2.06 16 2 C 0.14 3.02 2.57 44.99 0.12 3.14 16 3 H 0.06 1.68 7.58 -2.39 -0.02 1.66 16 4 C -0.11 -2.22 4.75 30.60 0.15 -2.07 16 5 C -0.12 -3.27 5.22 30.60 0.16 -3.11 16 6 C 0.15 5.66 6.26 86.38 0.54 6.20 16 7 N -0.76 -36.48 5.41 -343.44 -1.86 -38.34 16 8 C -0.24 -13.81 10.47 84.03 0.88 -12.93 16 9 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 10 C -0.06 -3.87 5.50 84.86 0.47 -3.40 16 11 N -0.98 -63.88 13.97 21.65 0.30 -63.58 16 12 Si 0.96 46.53 27.74 68.60 1.90 48.44 16 13 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 14 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 15 H -0.26 -11.59 6.52 99.48 0.65 -10.94 16 16 N -0.71 -14.15 4.42 -442.53 -1.96 -16.10 16 17 C 0.52 12.65 6.57 87.66 0.58 13.22 16 18 O -0.57 -18.31 14.25 -3.03 -0.04 -18.35 16 19 C -0.07 -1.35 2.79 -12.29 -0.03 -1.38 16 20 H 0.13 2.02 7.13 -2.39 -0.02 2.00 16 21 C -0.15 -2.62 8.88 71.98 0.64 -1.98 16 22 C -0.16 -3.31 4.40 -19.78 -0.09 -3.40 16 23 C 0.13 2.93 6.14 22.37 0.14 3.07 16 24 F -0.14 -3.95 13.82 44.97 0.62 -3.33 16 25 C -0.17 -2.75 10.02 22.32 0.22 -2.52 16 26 C -0.05 -0.52 10.04 22.26 0.22 -0.30 16 27 C -0.16 -1.93 10.02 22.32 0.22 -1.71 16 28 C 0.12 2.09 7.25 22.37 0.16 2.25 16 29 F -0.13 -2.39 16.19 44.97 0.73 -1.67 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 1.78 7.75 -2.39 -0.02 1.76 16 37 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.36 16.78 5.53 -92.71 -0.51 16.26 16 40 H 0.26 15.95 8.31 -92.70 -0.77 15.18 16 41 H 0.41 6.18 8.02 -92.71 -0.74 5.43 16 42 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 1.27 7.56 -2.38 -0.02 1.25 16 44 H 0.05 1.17 6.29 -2.39 -0.02 1.16 16 45 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 46 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 47 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 Total: -1.00 -78.53 390.57 4.43 -74.10 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: -0.32 Total: 25.83 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 5.05 Total: -7.00 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -3.51 Total: -118.02 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.04 Total: -18.35 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 1.35 Total: -5.00 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.90 Total: 48.44 kcal Total: -78.53 4.43 -74.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330866252.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.590 kcal (2) G-P(sol) polarization free energy of solvation -78.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds