Wall clock time and date at job start Sat Apr 11 2020 06:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 C 1.53000 * 109.47214 * 184.99844 * 4 2 1 6 6 C 1.53003 * 109.47061 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.47063 * 180.02562 * 6 5 4 8 8 C 1.36930 * 120.00066 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00143 * 359.97438 * 8 7 6 10 10 C 1.38812 * 119.99991 * 180.02562 * 8 7 6 11 11 N 1.31622 * 120.00264 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00003 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.46972 * 359.97438 * 12 10 8 14 14 H 1.48492 * 109.47336 * 119.99713 * 12 10 8 15 15 H 1.48504 * 109.46845 * 239.99803 * 12 10 8 16 16 N 1.46506 * 109.46824 * 240.00126 * 2 1 3 17 17 C 1.34777 * 119.99873 * 85.00531 * 16 2 1 18 18 O 1.21284 * 119.99754 * 359.97438 * 17 16 2 19 19 C 1.50696 * 120.00137 * 179.97438 * 17 16 2 20 20 H 1.09004 * 109.47043 * 299.99732 * 19 17 16 21 21 C 1.53002 * 109.46999 * 59.99467 * 19 17 16 22 22 C 1.50699 * 109.47192 * 179.97438 * 19 17 16 23 23 C 1.38226 * 119.98856 * 299.72021 * 22 19 17 24 24 C 1.38184 * 120.05332 * 179.76734 * 23 22 19 25 25 C 1.38497 * 120.02024 * 0.51069 * 24 23 22 26 26 F 1.35103 * 120.00930 * 179.76527 * 25 24 23 27 27 C 1.38395 * 119.97984 * 359.74881 * 25 24 23 28 28 C 1.38442 * 119.94549 * 359.97438 * 27 25 24 29 29 F 1.35097 * 120.01207 * 180.02562 * 28 27 25 30 30 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 31 31 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 33 33 H 1.09004 * 109.46768 * 304.99510 * 4 2 1 34 34 H 1.09003 * 109.47442 * 64.99577 * 4 2 1 35 35 H 1.08994 * 109.47015 * 299.99550 * 5 4 2 36 36 H 1.09003 * 109.47135 * 59.99545 * 5 4 2 37 37 H 1.08994 * 109.47113 * 299.99827 * 6 5 4 38 38 H 1.08995 * 109.46911 * 59.99935 * 6 5 4 39 39 H 0.97006 * 119.99634 * 359.97438 * 7 6 5 40 40 H 0.97001 * 119.99929 * 180.02562 * 11 10 8 41 41 H 0.96995 * 120.00050 * 264.72646 * 16 2 1 42 42 H 1.09002 * 109.46838 * 179.97438 * 21 19 17 43 43 H 1.09001 * 109.47142 * 300.00189 * 21 19 17 44 44 H 1.09001 * 109.47248 * 60.00702 * 21 19 17 45 45 H 1.08003 * 119.97430 * 0.02562 * 23 22 19 46 46 H 1.08001 * 119.99431 * 180.25641 * 24 23 22 47 47 H 1.07993 * 120.02648 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3136 6 6 4.0747 -1.3344 2.5631 7 7 5.5347 -1.2305 2.6252 8 6 6.2184 -1.8047 3.6633 9 1 5.6814 -2.3338 4.4366 10 6 7.6018 -1.7059 3.7224 11 7 8.2563 -1.0606 2.7802 12 14 8.5346 -2.4899 5.1382 13 1 7.5743 -3.1515 6.0577 14 1 9.4860 -3.4982 4.6062 15 1 9.2850 -1.4426 5.8768 16 7 2.0182 -0.6906 -1.1963 17 6 2.1470 -0.0182 -2.3572 18 8 1.8582 1.1585 -2.4116 19 6 2.6498 -0.7284 -3.5875 20 1 3.6492 -1.1202 -3.3980 21 6 1.7062 -1.8826 -3.9315 22 6 2.6999 0.2399 -4.7412 23 6 1.5434 0.8635 -5.1705 24 6 1.5886 1.7552 -6.2251 25 6 2.7912 2.0170 -6.8601 26 9 2.8343 2.8853 -7.8943 27 6 3.9489 1.3892 -6.4347 28 6 3.9033 0.5004 -5.3743 29 9 5.0327 -0.1129 -4.9576 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6054 -0.2619 2.1369 34 1 1.7516 -1.7717 1.2055 35 1 3.9994 -1.0730 0.4259 36 1 3.8532 0.4368 1.3573 37 1 3.6401 -0.8745 3.4506 38 1 3.7863 -2.3846 2.5198 39 1 6.0171 -0.7556 1.9304 40 1 9.2230 -0.9919 2.8213 41 1 2.2527 -1.6308 -1.1518 42 1 2.0697 -2.3960 -4.8217 43 1 1.6696 -2.5830 -3.0971 44 1 0.7069 -1.4908 -4.1212 45 1 0.6044 0.6568 -4.6785 46 1 0.6851 2.2451 -6.5571 47 1 4.8871 1.5931 -6.9291 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330987630.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:09 Heat of formation + Delta-G solvation = -112.095014 kcal Electronic energy + Delta-G solvation = -29068.948648 eV Core-core repulsion = 24694.204974 eV Total energy + Delta-G solvation = -4374.743673 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.30269 -49.27130 -40.53731 -38.93097 -36.81699 -34.85264 -34.50927 -32.53850 -31.22676 -31.00905 -29.51377 -29.16365 -25.73124 -25.17792 -23.59148 -23.18207 -22.53295 -20.97067 -20.76311 -20.26423 -18.55347 -17.83427 -17.07658 -16.97293 -16.71119 -16.22627 -16.00208 -15.66395 -15.56004 -15.24027 -14.76489 -14.69115 -14.50135 -14.34455 -14.03461 -13.74440 -13.59180 -13.25237 -13.11169 -13.00380 -12.80829 -12.61911 -12.36323 -12.23127 -12.11768 -12.02794 -11.58847 -11.53818 -11.32296 -11.17588 -10.87138 -10.81528 -10.46972 -10.41538 -9.98979 -9.88305 -9.68903 -9.36141 -9.15016 -8.93465 -8.86783 -6.90987 -5.75489 -3.04336 0.59607 0.71685 2.50220 2.87094 3.20660 3.43503 3.48682 3.51334 3.55256 3.99782 4.12465 4.21737 4.46079 4.54489 4.59962 4.72255 4.74577 4.82702 4.92766 5.01916 5.12602 5.22042 5.38129 5.39648 5.47585 5.50854 5.53864 5.57902 5.58305 5.60072 5.66572 5.74535 5.77270 5.91243 5.93979 6.02783 6.10290 6.19342 6.34817 6.40217 6.42828 6.44586 6.85978 6.89331 7.38210 7.70741 8.09560 8.43445 9.54265 10.13323 10.47483 11.47503 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012635 B = 0.002278 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.533536 B =12289.708354 C =13822.134378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.089 0.911 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.933 5.933 12 Si 0.907 3.093 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.291 1.291 16 N -0.718 5.718 17 C 0.522 3.478 18 O -0.534 6.534 19 C -0.077 4.077 20 H 0.114 0.886 21 C -0.140 4.140 22 C -0.109 4.109 23 C -0.028 4.028 24 C -0.165 4.165 25 C 0.129 3.871 26 F -0.133 7.133 27 C -0.194 4.194 28 C 0.139 3.861 29 F -0.126 7.126 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.017 0.983 38 H 0.016 0.984 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.401 0.599 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.049 1.154 -20.072 27.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.107 0.893 4 C -0.161 4.161 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 N -0.369 5.369 17 C 0.307 3.693 18 O -0.410 6.410 19 C -0.098 4.098 20 H 0.132 0.868 21 C -0.197 4.197 22 C -0.110 4.110 23 C -0.046 4.046 24 C -0.183 4.183 25 C 0.109 3.891 26 F -0.112 7.112 27 C -0.213 4.213 28 C 0.120 3.880 29 F -0.104 7.104 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.236 0.764 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.158 0.842 46 H 0.160 0.840 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.184 1.926 -19.951 27.745 hybrid contribution 1.275 -0.594 0.497 1.491 sum -17.910 1.333 -19.454 26.476 Atomic orbital electron populations 1.22159 0.95414 1.01956 1.02380 1.21060 0.93590 0.97827 0.83852 0.89335 1.21853 0.96902 1.00756 0.96608 1.21734 0.93623 1.01474 0.99532 1.20644 0.86210 0.96412 0.94195 1.42393 1.00209 1.66244 1.29037 1.19281 0.89454 1.27028 1.01270 0.91164 1.24764 0.96479 1.01252 0.98679 1.69676 1.07144 1.47002 1.34380 0.86115 0.79899 0.78506 0.81669 1.20566 1.21854 1.21855 1.46069 1.67071 1.14262 1.09520 1.20271 0.77513 0.87204 0.84326 1.90718 1.49759 1.15618 1.84923 1.20242 1.03236 0.95361 0.90942 0.86817 1.21802 0.98742 0.96213 1.02943 1.19400 0.92373 1.01074 0.98156 1.20638 0.97951 0.92750 0.93304 1.21163 0.97300 1.01543 0.98343 1.17300 0.93970 0.90801 0.87012 1.91530 1.97200 1.66864 1.55562 1.20971 0.99664 1.00699 1.00015 1.17098 0.82064 0.94159 0.94729 1.91549 1.48976 1.80784 1.89115 0.92385 0.92522 0.91566 0.90271 0.91402 0.92072 0.91973 0.96524 0.96588 0.78334 0.93557 0.76397 0.90993 0.91142 0.91691 0.84185 0.84013 0.83337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.48 37.16 0.35 -1.09 16 2 C 0.14 1.51 2.57 -67.93 -0.17 1.33 16 3 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 4 C -0.12 -1.38 4.75 -26.73 -0.13 -1.51 16 5 C -0.13 -1.95 5.22 -26.73 -0.14 -2.09 16 6 C 0.15 3.04 6.26 -4.04 -0.03 3.02 16 7 N -0.73 -19.00 5.60 -59.91 -0.34 -19.34 16 8 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 9 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 10 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 11 N -0.93 -28.74 13.06 55.49 0.72 -28.01 16 12 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 14 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 N -0.72 -7.10 4.42 -53.81 -0.24 -7.34 16 17 C 0.52 5.89 6.99 -10.99 -0.08 5.81 16 18 O -0.53 -7.81 14.79 5.55 0.08 -7.73 16 19 C -0.08 -0.69 2.88 -92.92 -0.27 -0.96 16 20 H 0.11 1.05 7.13 -51.93 -0.37 0.68 16 21 C -0.14 -0.85 8.90 37.16 0.33 -0.52 16 22 C -0.11 -1.08 4.40 -104.55 -0.46 -1.54 16 23 C -0.03 -0.25 7.93 -39.61 -0.31 -0.57 16 24 C -0.16 -1.39 10.03 -39.51 -0.40 -1.79 16 25 C 0.13 1.22 7.30 -39.43 -0.29 0.94 16 26 F -0.13 -1.31 17.27 2.25 0.04 -1.27 16 27 C -0.19 -1.89 10.01 -39.45 -0.39 -2.28 16 28 C 0.14 1.49 7.24 -39.43 -0.29 1.20 16 29 F -0.13 -1.48 16.19 2.25 0.04 -1.45 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.96 7.75 -51.93 -0.40 0.55 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.38 10.47 7.67 -40.82 -0.31 10.16 16 40 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.40 3.22 8.02 -40.82 -0.33 2.89 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.35 7.57 -51.93 -0.39 -0.05 16 44 H 0.06 0.36 7.37 -51.93 -0.38 -0.02 16 45 H 0.14 1.07 7.51 -52.48 -0.39 0.68 16 46 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 397.80 15.07 5.99 5.99 Total: -1.00 -33.77 397.80 -8.41 -42.18 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.17 Total: 6.93 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -2.51 Total: -7.57 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.15 Total: -54.69 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: 0.08 Total: -7.73 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.08 Total: -2.72 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.77 -8.41 -42.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330987630.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.916 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds