Wall clock time and date at job start Sat Apr 11 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 C 1.53000 * 109.47214 * 184.99844 * 4 2 1 6 6 C 1.53003 * 109.47061 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.47063 * 180.02562 * 6 5 4 8 8 C 1.36930 * 120.00066 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00143 * 359.97438 * 8 7 6 10 10 C 1.38812 * 119.99991 * 180.02562 * 8 7 6 11 11 N 1.31622 * 120.00264 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00003 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.46972 * 359.97438 * 12 10 8 14 14 H 1.48492 * 109.47336 * 119.99713 * 12 10 8 15 15 H 1.48504 * 109.46845 * 239.99803 * 12 10 8 16 16 N 1.46506 * 109.46824 * 240.00126 * 2 1 3 17 17 C 1.34777 * 119.99873 * 85.00531 * 16 2 1 18 18 O 1.21284 * 119.99754 * 359.97438 * 17 16 2 19 19 C 1.50696 * 120.00137 * 179.97438 * 17 16 2 20 20 H 1.09004 * 109.47043 * 299.99732 * 19 17 16 21 21 C 1.53002 * 109.46999 * 59.99467 * 19 17 16 22 22 C 1.50699 * 109.47192 * 179.97438 * 19 17 16 23 23 C 1.38226 * 119.98856 * 299.72021 * 22 19 17 24 24 C 1.38184 * 120.05332 * 179.76734 * 23 22 19 25 25 C 1.38497 * 120.02024 * 0.51069 * 24 23 22 26 26 F 1.35103 * 120.00930 * 179.76527 * 25 24 23 27 27 C 1.38395 * 119.97984 * 359.74881 * 25 24 23 28 28 C 1.38442 * 119.94549 * 359.97438 * 27 25 24 29 29 F 1.35097 * 120.01207 * 180.02562 * 28 27 25 30 30 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 31 31 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 33 33 H 1.09004 * 109.46768 * 304.99510 * 4 2 1 34 34 H 1.09003 * 109.47442 * 64.99577 * 4 2 1 35 35 H 1.08994 * 109.47015 * 299.99550 * 5 4 2 36 36 H 1.09003 * 109.47135 * 59.99545 * 5 4 2 37 37 H 1.08994 * 109.47113 * 299.99827 * 6 5 4 38 38 H 1.08995 * 109.46911 * 59.99935 * 6 5 4 39 39 H 0.97006 * 119.99634 * 359.97438 * 7 6 5 40 40 H 0.97001 * 119.99929 * 180.02562 * 11 10 8 41 41 H 0.96995 * 120.00050 * 264.72646 * 16 2 1 42 42 H 1.09002 * 109.46838 * 179.97438 * 21 19 17 43 43 H 1.09001 * 109.47142 * 300.00189 * 21 19 17 44 44 H 1.09001 * 109.47248 * 60.00702 * 21 19 17 45 45 H 1.08003 * 119.97430 * 0.02562 * 23 22 19 46 46 H 1.08001 * 119.99431 * 180.25641 * 24 23 22 47 47 H 1.07993 * 120.02648 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3136 6 6 4.0747 -1.3344 2.5631 7 7 5.5347 -1.2305 2.6252 8 6 6.2184 -1.8047 3.6633 9 1 5.6814 -2.3338 4.4366 10 6 7.6018 -1.7059 3.7224 11 7 8.2563 -1.0606 2.7802 12 14 8.5346 -2.4899 5.1382 13 1 7.5743 -3.1515 6.0577 14 1 9.4860 -3.4982 4.6062 15 1 9.2850 -1.4426 5.8768 16 7 2.0182 -0.6906 -1.1963 17 6 2.1470 -0.0182 -2.3572 18 8 1.8582 1.1585 -2.4116 19 6 2.6498 -0.7284 -3.5875 20 1 3.6492 -1.1202 -3.3980 21 6 1.7062 -1.8826 -3.9315 22 6 2.6999 0.2399 -4.7412 23 6 1.5434 0.8635 -5.1705 24 6 1.5886 1.7552 -6.2251 25 6 2.7912 2.0170 -6.8601 26 9 2.8343 2.8853 -7.8943 27 6 3.9489 1.3892 -6.4347 28 6 3.9033 0.5004 -5.3743 29 9 5.0327 -0.1129 -4.9576 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6054 -0.2619 2.1369 34 1 1.7516 -1.7717 1.2055 35 1 3.9994 -1.0730 0.4259 36 1 3.8532 0.4368 1.3573 37 1 3.6401 -0.8745 3.4506 38 1 3.7863 -2.3846 2.5198 39 1 6.0171 -0.7556 1.9304 40 1 9.2230 -0.9919 2.8213 41 1 2.2527 -1.6308 -1.1518 42 1 2.0697 -2.3960 -4.8217 43 1 1.6696 -2.5830 -3.0971 44 1 0.7069 -1.4908 -4.1212 45 1 0.6044 0.6568 -4.6785 46 1 0.6851 2.2451 -6.5571 47 1 4.8871 1.5931 -6.9291 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330987630.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:08 Heat of formation + Delta-G solvation = -132.090322 kcal Electronic energy + Delta-G solvation = -29069.815709 eV Core-core repulsion = 24694.204974 eV Total energy + Delta-G solvation = -4375.610735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.12597 -50.04954 -41.37328 -39.71190 -37.93467 -36.49653 -35.25972 -34.12022 -32.45782 -31.83243 -30.86486 -29.89312 -27.22659 -25.88699 -24.85028 -24.25059 -23.52461 -22.36998 -21.73619 -21.09806 -19.32654 -19.13594 -18.61422 -17.82616 -17.57707 -17.01802 -16.79532 -16.63681 -16.48345 -16.37189 -16.08431 -15.75942 -15.53845 -15.39691 -15.26429 -15.02808 -14.79507 -14.40587 -14.05094 -13.83645 -13.66721 -13.45905 -13.31577 -13.18702 -13.01092 -12.96887 -12.80906 -12.76751 -12.37481 -12.28643 -12.20099 -12.16422 -12.03527 -11.85411 -11.70689 -11.47403 -10.95191 -10.78083 -10.09514 -10.03322 -9.68240 -9.01486 -7.96641 -5.26094 -0.14654 -0.01358 1.46402 1.47707 1.57900 1.63249 2.09677 2.44746 2.55045 2.80412 3.27002 3.37230 3.41203 3.50946 3.64264 3.78458 3.92064 4.01115 4.08827 4.11657 4.13829 4.26691 4.31835 4.43245 4.60193 4.67076 4.70770 4.76997 4.84427 4.84923 4.85853 4.87716 4.91003 4.96043 5.01892 5.03505 5.14751 5.19721 5.26748 5.35150 5.39039 5.43703 5.50438 5.61809 5.70906 6.25958 6.57368 7.25948 7.31287 8.08783 8.30376 9.27359 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012635 B = 0.002278 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.533536 B =12289.708354 C =13822.134378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.144 3.856 3 H 0.061 0.939 4 C -0.109 4.109 5 C -0.113 4.113 6 C 0.150 3.850 7 N -0.751 5.751 8 C -0.245 4.245 9 H 0.078 0.922 10 C -0.080 4.080 11 N -0.972 5.972 12 Si 0.976 3.024 13 H -0.263 1.263 14 H -0.292 1.292 15 H -0.294 1.294 16 N -0.710 5.710 17 C 0.520 3.480 18 O -0.571 6.571 19 C -0.073 4.073 20 H 0.109 0.891 21 C -0.135 4.135 22 C -0.115 4.115 23 C -0.031 4.031 24 C -0.157 4.157 25 C 0.118 3.882 26 F -0.136 7.136 27 C -0.198 4.198 28 C 0.116 3.884 29 F -0.138 7.138 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.042 0.958 37 H 0.019 0.981 38 H 0.027 0.973 39 H 0.371 0.629 40 H 0.251 0.749 41 H 0.412 0.588 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.154 0.846 46 H 0.166 0.834 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.128 -0.196 -19.640 28.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 H 0.079 0.921 4 C -0.148 4.148 5 C -0.151 4.151 6 C 0.024 3.976 7 N -0.394 5.394 8 C -0.377 4.377 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.805 3.195 13 H -0.187 1.187 14 H -0.219 1.219 15 H -0.221 1.221 16 N -0.362 5.362 17 C 0.306 3.694 18 O -0.450 6.450 19 C -0.095 4.095 20 H 0.127 0.873 21 C -0.192 4.192 22 C -0.117 4.117 23 C -0.049 4.049 24 C -0.176 4.176 25 C 0.099 3.901 26 F -0.115 7.115 27 C -0.217 4.217 28 C 0.097 3.903 29 F -0.116 7.116 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.037 0.963 38 H 0.045 0.955 39 H 0.202 0.798 40 H 0.060 0.940 41 H 0.249 0.751 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.172 0.828 46 H 0.183 0.817 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -21.312 0.535 -19.502 28.894 hybrid contribution 1.864 -0.144 0.361 1.904 sum -19.448 0.392 -19.142 27.291 Atomic orbital electron populations 1.22073 0.93479 1.03131 1.02344 1.20956 0.94970 0.96334 0.83789 0.92104 1.21758 0.93315 1.02381 0.97313 1.21598 0.96717 0.99519 0.97293 1.20868 0.83077 0.97481 0.96222 1.42681 1.02637 1.65907 1.28162 1.19715 0.90000 1.26213 1.01734 0.90400 1.25644 0.97596 1.02506 1.01493 1.69840 1.07044 1.48922 1.36513 0.85036 0.78467 0.77346 0.78693 1.18750 1.21903 1.22133 1.46031 1.66452 1.14739 1.08986 1.20641 0.76851 0.86802 0.85085 1.90699 1.51564 1.17224 1.85558 1.20265 1.03622 0.95927 0.89653 0.87340 1.21826 0.98279 0.95217 1.03888 1.19619 0.92452 1.01313 0.98290 1.20833 0.98126 0.92592 0.93358 1.21448 0.97768 1.00807 0.97553 1.17419 0.94353 0.91076 0.87292 1.91521 1.97236 1.66987 1.55726 1.21110 1.00378 1.00412 0.99827 1.17310 0.82107 0.95161 0.95753 1.91512 1.49627 1.81142 1.89369 0.93358 0.90669 0.90718 0.89295 0.89143 0.92383 0.93885 0.96306 0.95476 0.79774 0.94029 0.75085 0.90214 0.89663 0.90868 0.82808 0.81655 0.82493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.48 71.98 0.68 -1.68 16 2 C 0.14 2.86 2.57 44.99 0.12 2.98 16 3 H 0.06 1.58 7.58 -2.39 -0.02 1.56 16 4 C -0.11 -2.21 4.75 30.59 0.15 -2.07 16 5 C -0.11 -3.43 5.22 30.60 0.16 -3.27 16 6 C 0.15 5.79 6.26 86.38 0.54 6.33 16 7 N -0.75 -38.98 5.60 -343.47 -1.92 -40.90 16 8 C -0.24 -13.87 9.99 84.03 0.84 -13.03 16 9 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 10 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 11 N -0.97 -60.84 13.06 21.65 0.28 -60.55 16 12 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 13 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 14 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 15 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 16 N -0.71 -13.06 4.42 -442.53 -1.96 -15.01 16 17 C 0.52 11.40 6.99 87.66 0.61 12.02 16 18 O -0.57 -16.71 14.79 -3.04 -0.04 -16.75 16 19 C -0.07 -1.28 2.88 -12.29 -0.04 -1.31 16 20 H 0.11 2.00 7.13 -2.38 -0.02 1.98 16 21 C -0.13 -1.37 8.90 71.98 0.64 -0.73 16 22 C -0.12 -2.27 4.40 -19.82 -0.09 -2.36 16 23 C -0.03 -0.52 7.93 22.25 0.18 -0.35 16 24 C -0.16 -2.48 10.03 22.32 0.22 -2.25 16 25 C 0.12 2.19 7.30 22.37 0.16 2.36 16 26 F -0.14 -2.62 17.27 44.97 0.78 -1.84 16 27 C -0.20 -3.90 10.01 22.36 0.22 -3.68 16 28 C 0.12 2.54 7.24 22.37 0.16 2.70 16 29 F -0.14 -3.38 16.19 44.97 0.73 -2.65 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.06 1.78 7.75 -2.39 -0.02 1.76 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.37 20.71 7.67 -92.70 -0.71 20.00 16 40 H 0.25 15.16 8.31 -92.71 -0.77 14.38 16 41 H 0.41 5.73 8.02 -92.71 -0.74 4.99 16 42 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.08 0.61 7.57 -2.39 -0.02 0.60 16 44 H 0.07 0.64 7.37 -2.39 -0.02 0.62 16 45 H 0.15 2.11 7.51 -2.91 -0.02 2.09 16 46 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 47 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -73.38 397.80 4.46 -68.93 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -0.46 Total: 28.82 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 5.03 Total: -8.57 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -3.60 Total: -116.47 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.04 Total: -16.75 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 1.50 Total: -4.49 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -73.38 4.46 -68.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330987630.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.164 kcal (2) G-P(sol) polarization free energy of solvation -73.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds