Wall clock time and date at job start Sat Apr 11 2020 06:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46651 * 2 1 4 4 C 1.52995 * 109.47568 * 239.99641 * 2 1 3 5 5 C 1.52998 * 109.47347 * 174.99785 * 4 2 1 6 6 C 1.53004 * 109.46929 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47038 * 180.02562 * 6 5 4 8 8 C 1.36935 * 119.99767 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00310 * 359.97438 * 8 7 6 10 10 C 1.38817 * 119.99639 * 180.02562 * 8 7 6 11 11 N 1.31625 * 120.00243 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99889 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47143 * 89.99905 * 12 10 8 14 14 H 1.48498 * 109.46864 * 209.99556 * 12 10 8 15 15 H 1.48497 * 109.46821 * 329.99825 * 12 10 8 16 16 N 1.46505 * 109.47206 * 119.99347 * 2 1 3 17 17 C 1.34773 * 120.00065 * 275.00050 * 16 2 1 18 18 O 1.21282 * 120.00084 * 0.02562 * 17 16 2 19 19 C 1.50699 * 120.00201 * 179.97438 * 17 16 2 20 20 C 1.52998 * 109.47493 * 180.02562 * 19 17 16 21 21 C 1.50693 * 109.47462 * 180.02562 * 20 19 17 22 22 C 1.38238 * 119.98747 * 265.23450 * 21 20 19 23 23 C 1.38182 * 120.04926 * 180.23109 * 22 21 20 24 24 C 1.38497 * 120.02770 * 359.78734 * 23 22 21 25 25 F 1.35103 * 120.01374 * 180.02562 * 24 23 22 26 26 C 1.38397 * 119.97392 * 359.97438 * 24 23 22 27 27 C 1.38438 * 119.94948 * 0.02562 * 26 24 23 28 28 F 1.35104 * 120.01364 * 179.97438 * 27 26 24 29 29 H 1.08999 * 109.47082 * 300.00248 * 1 2 3 30 30 H 1.08998 * 109.47627 * 60.00730 * 1 2 3 31 31 H 1.09002 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46979 * 295.00108 * 4 2 1 33 33 H 1.09004 * 109.46788 * 54.99390 * 4 2 1 34 34 H 1.08997 * 109.47045 * 299.99487 * 5 4 2 35 35 H 1.08995 * 109.47264 * 60.00009 * 5 4 2 36 36 H 1.09004 * 109.47138 * 300.00165 * 6 5 4 37 37 H 1.08995 * 109.47190 * 59.99903 * 6 5 4 38 38 H 0.96998 * 120.00019 * 359.97438 * 7 6 5 39 39 H 0.96993 * 120.00244 * 180.02562 * 11 10 8 40 40 H 0.96993 * 119.99654 * 95.00219 * 16 2 1 41 41 H 1.09004 * 109.46785 * 60.00354 * 19 17 16 42 42 H 1.08993 * 109.47111 * 300.00423 * 19 17 16 43 43 H 1.08998 * 109.46960 * 59.99807 * 20 19 17 44 44 H 1.09007 * 109.47243 * 300.00323 * 20 19 17 45 45 H 1.08004 * 119.97328 * 359.97167 * 22 21 20 46 46 H 1.08004 * 119.98465 * 179.76793 * 23 22 21 47 47 H 1.07995 * 120.02726 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3135 6 6 4.0749 -1.3341 -2.5631 7 7 5.5349 -1.2312 -2.6245 8 6 6.2186 -1.8046 -3.6632 9 1 5.6815 -2.3331 -4.4368 10 6 7.6022 -1.7076 -3.7210 11 7 8.2568 -1.0639 -2.7778 12 14 8.5350 -2.4905 -5.1375 13 1 8.6682 -1.5098 -6.2447 14 1 9.8850 -2.9006 -4.6745 15 1 7.7932 -3.6833 -5.6194 16 7 2.0184 -0.6905 1.1963 17 6 2.1471 -0.0180 2.3572 18 8 1.8582 1.1586 2.4116 19 6 2.6489 -0.7284 3.5878 20 6 2.6999 0.2547 4.7591 21 6 3.2023 -0.4555 5.9896 22 6 2.3038 -0.9853 6.8968 23 6 2.7630 -1.6327 8.0279 24 6 4.1243 -1.7552 8.2518 25 9 4.5730 -2.3886 9.3576 26 6 5.0247 -1.2295 7.3418 27 6 4.5635 -0.5812 6.2088 28 9 5.4414 -0.0671 5.3199 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -1.7716 -1.2054 33 1 1.6054 -0.2619 -2.1369 34 1 3.8532 0.4370 -1.3574 35 1 3.9995 -1.0726 -0.4258 36 1 3.7865 -2.3844 -2.5198 37 1 3.6402 -0.8743 -3.4506 38 1 6.0173 -0.7562 -1.9298 39 1 9.2235 -0.9957 -2.8185 40 1 2.2491 -1.6316 1.1528 41 1 3.6481 -1.1209 3.3987 42 1 1.9760 -1.5502 3.8327 43 1 1.7006 0.6468 4.9480 44 1 3.3725 1.0768 4.5144 45 1 1.2420 -0.8896 6.7234 46 1 2.0601 -2.0429 8.7379 47 1 6.0864 -1.3249 7.5153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717690607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:26 Heat of formation + Delta-G solvation = -139.085927 kcal Electronic energy + Delta-G solvation = -28233.270564 eV Core-core repulsion = 23857.356477 eV Total energy + Delta-G solvation = -4375.914087 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.06271 -50.01854 -40.96867 -39.92495 -38.00168 -36.52215 -34.95441 -34.16871 -32.61208 -31.84287 -31.01487 -30.05753 -27.23952 -25.88043 -24.73541 -24.20226 -22.79573 -22.33295 -21.71486 -21.29607 -19.22595 -19.13756 -18.30092 -18.25266 -17.32810 -16.97853 -16.87035 -16.65319 -16.45026 -16.33899 -16.24215 -15.82963 -15.49095 -15.40810 -15.24961 -14.95262 -14.70543 -14.61986 -14.22530 -13.85311 -13.63562 -13.51314 -13.40629 -13.16800 -13.01124 -12.78331 -12.70837 -12.57751 -12.40980 -12.38532 -12.23527 -12.06383 -11.97590 -11.85868 -11.71726 -11.48375 -10.94422 -10.85301 -10.08597 -10.02043 -9.62964 -9.01959 -7.96828 -5.26432 -0.10911 -0.00339 1.45955 1.48414 1.56927 1.69476 2.21216 2.40659 2.54891 2.85303 3.36770 3.39079 3.52898 3.58399 3.65878 3.87468 3.92951 3.99267 4.08033 4.11665 4.21755 4.26317 4.31895 4.42683 4.59572 4.62928 4.70898 4.71670 4.83615 4.83653 4.87102 4.91960 4.93641 4.95315 5.02372 5.06436 5.14606 5.14856 5.29201 5.33520 5.38972 5.43021 5.49725 5.63783 5.75767 6.25617 6.61679 7.30916 7.31709 8.08392 8.30169 9.27014 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.009448 B = 0.002152 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.015660 B =13008.038501 C =15408.226255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.142 3.858 3 H 0.060 0.940 4 C -0.109 4.109 5 C -0.113 4.113 6 C 0.149 3.851 7 N -0.751 5.751 8 C -0.247 4.247 9 H 0.078 0.922 10 C -0.080 4.080 11 N -0.972 5.972 12 Si 0.977 3.023 13 H -0.287 1.287 14 H -0.295 1.295 15 H -0.266 1.266 16 N -0.716 5.716 17 C 0.511 3.489 18 O -0.585 6.585 19 C -0.131 4.131 20 C -0.059 4.059 21 C -0.125 4.125 22 C -0.048 4.048 23 C -0.150 4.150 24 C 0.112 3.888 25 F -0.139 7.139 26 C -0.199 4.199 27 C 0.110 3.890 28 F -0.143 7.143 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.027 0.973 37 H 0.019 0.981 38 H 0.371 0.629 39 H 0.251 0.749 40 H 0.413 0.587 41 H 0.094 0.906 42 H 0.130 0.870 43 H 0.097 0.903 44 H 0.059 0.941 45 H 0.177 0.823 46 H 0.170 0.830 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.825 -2.821 22.774 30.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.037 3.963 3 H 0.078 0.922 4 C -0.147 4.147 5 C -0.151 4.151 6 C 0.023 3.977 7 N -0.394 5.394 8 C -0.378 4.378 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.805 3.195 13 H -0.214 1.214 14 H -0.222 1.222 15 H -0.191 1.191 16 N -0.367 5.367 17 C 0.299 3.701 18 O -0.466 6.466 19 C -0.171 4.171 20 C -0.097 4.097 21 C -0.126 4.126 22 C -0.065 4.065 23 C -0.169 4.169 24 C 0.093 3.907 25 F -0.118 7.118 26 C -0.218 4.218 27 C 0.091 3.909 28 F -0.122 7.122 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.037 0.963 38 H 0.202 0.798 39 H 0.060 0.940 40 H 0.249 0.751 41 H 0.112 0.888 42 H 0.148 0.852 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.195 0.805 46 H 0.188 0.812 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.983 -2.109 22.632 30.265 hybrid contribution 1.974 -0.277 -0.519 2.060 sum -18.009 -2.385 22.113 28.618 Atomic orbital electron populations 1.22076 0.93680 1.03040 1.02275 1.20939 0.94861 0.96377 0.84080 0.92175 1.21750 0.93389 1.02296 0.97304 1.21590 0.96641 0.99540 0.97296 1.20869 0.83106 0.97452 0.96235 1.42670 1.02602 1.65967 1.28132 1.19687 0.90013 1.26417 1.01731 0.90416 1.25654 0.97575 1.02510 1.01481 1.69833 1.07084 1.48965 1.36449 0.85093 0.77634 0.78282 0.78483 1.21391 1.22153 1.19090 1.46109 1.66657 1.14721 1.09261 1.21072 0.76549 0.86896 0.85565 1.90683 1.52173 1.17833 1.85873 1.21675 1.04260 0.99965 0.91180 1.20178 1.03210 0.96484 0.89829 1.20090 0.91010 1.02258 0.99289 1.21165 1.01305 0.93244 0.90811 1.21542 0.93231 1.01893 1.00236 1.17512 0.93001 0.96127 0.84056 1.91523 1.90139 1.79604 1.50516 1.21145 1.02167 1.03527 0.94973 1.17478 0.87190 0.97831 0.88415 1.91529 1.68891 1.84768 1.67002 0.93546 0.90666 0.90762 0.89253 0.89347 0.93840 0.92360 0.95546 0.96281 0.79761 0.94002 0.75070 0.88756 0.85221 0.88402 0.92225 0.80536 0.81246 0.83258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.48 71.98 0.68 -1.88 16 2 C 0.14 2.98 2.57 44.99 0.12 3.10 16 3 H 0.06 1.63 7.58 -2.38 -0.02 1.61 16 4 C -0.11 -2.30 4.75 30.59 0.15 -2.15 16 5 C -0.11 -3.48 5.22 30.60 0.16 -3.32 16 6 C 0.15 5.87 6.26 86.38 0.54 6.41 16 7 N -0.75 -39.27 5.60 -343.45 -1.92 -41.20 16 8 C -0.25 -14.06 9.99 84.03 0.84 -13.22 16 9 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 10 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 11 N -0.97 -61.09 13.06 21.65 0.28 -60.80 16 12 Si 0.98 46.67 29.55 68.60 2.03 48.70 16 13 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 14 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 16 N -0.72 -13.71 4.53 -442.53 -2.00 -15.71 16 17 C 0.51 11.33 7.79 87.66 0.68 12.01 16 18 O -0.59 -17.80 15.64 -3.04 -0.05 -17.85 16 19 C -0.13 -2.02 5.68 29.85 0.17 -1.85 16 20 C -0.06 -0.98 4.41 29.85 0.13 -0.85 16 21 C -0.13 -1.83 5.14 -19.81 -0.10 -1.93 16 22 C -0.05 -0.42 9.68 22.26 0.22 -0.21 16 23 C -0.15 -1.43 10.02 22.32 0.22 -1.20 16 24 C 0.11 1.64 7.30 22.37 0.16 1.80 16 25 F -0.14 -2.28 17.27 44.97 0.78 -1.51 16 26 C -0.20 -3.35 10.01 22.36 0.22 -3.12 16 27 C 0.11 2.07 7.24 22.37 0.16 2.23 16 28 F -0.14 -3.45 16.56 44.97 0.74 -2.70 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 1.82 7.75 -2.39 -0.02 1.80 16 36 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.37 20.85 7.67 -92.71 -0.71 20.13 16 39 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.41 5.96 8.60 -92.71 -0.80 5.16 16 41 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.10 1.42 8.01 -2.39 -0.02 1.40 16 44 H 0.06 1.33 7.75 -2.38 -0.02 1.31 16 45 H 0.18 0.44 8.06 -2.91 -0.02 0.41 16 46 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 47 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -75.56 403.68 4.16 -71.40 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: -0.52 Total: 28.11 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 4.82 Total: -8.44 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -3.65 Total: -117.71 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.05 Total: -17.85 kcal Atomic # 9 Polarization: -5.73 SS G_CDS: 1.52 Total: -4.21 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -75.56 4.16 -71.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717690607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.684 kcal (2) G-P(sol) polarization free energy of solvation -75.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds