Wall clock time and date at job start Sat Apr 11 2020 06:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99974 * 2 1 4 4 C 1.53002 * 109.47634 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47148 * 185.00267 * 4 3 2 6 6 C 1.50700 * 109.46765 * 305.00584 * 4 3 2 7 7 O 1.20827 * 119.99975 * 120.00165 * 6 4 3 8 8 O 1.34226 * 120.00120 * 299.99159 * 6 4 3 9 9 C 1.45198 * 116.99917 * 180.02562 * 8 6 4 10 10 N 1.46503 * 109.46597 * 65.00066 * 4 3 2 11 11 C 1.46860 * 124.37175 * 120.14800 * 10 4 3 12 12 C 1.54642 * 105.44840 * 197.12223 * 11 10 4 13 13 C 1.53861 * 101.58647 * 335.05138 * 12 11 10 14 14 C 1.53244 * 110.60041 * 144.19136 * 13 12 11 15 15 C 1.54801 * 104.80740 * 122.15802 * 14 13 12 16 16 C 1.55005 * 102.94410 * 21.90224 * 15 14 13 17 17 N 1.47078 * 110.70570 * 263.78244 * 13 12 11 18 18 C 1.46893 * 111.00113 * 93.72774 * 17 13 12 19 19 C 1.50700 * 109.47231 * 169.99940 * 18 17 13 20 20 H 1.07997 * 120.00093 * 0.02562 * 19 18 17 21 21 C 1.37882 * 120.00304 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99716 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99932 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47167 * 60.00517 * 23 21 19 25 25 H 1.48508 * 109.46681 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47340 * 300.00063 * 23 21 19 27 27 C 1.34664 * 124.37065 * 300.02513 * 10 4 3 28 28 O 1.21283 * 125.08311 * 359.14746 * 27 10 4 29 29 H 1.08991 * 109.47305 * 299.99393 * 1 2 3 30 30 H 1.09003 * 109.47426 * 59.99842 * 1 2 3 31 31 H 1.09004 * 109.47132 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46999 * 60.00070 * 3 2 1 33 33 H 1.09007 * 109.47286 * 300.00383 * 3 2 1 34 34 H 1.08995 * 109.47438 * 299.99812 * 9 8 6 35 35 H 1.08997 * 109.47610 * 60.00464 * 9 8 6 36 36 H 1.09001 * 109.46696 * 180.02562 * 9 8 6 37 37 H 1.09005 * 110.42969 * 78.04909 * 11 10 4 38 38 H 1.08996 * 110.17553 * 316.06974 * 11 10 4 39 39 H 1.09002 * 111.00593 * 216.97700 * 12 11 10 40 40 H 1.09008 * 110.99991 * 93.12996 * 12 11 10 41 41 H 1.08996 * 110.36755 * 240.98646 * 14 13 12 42 42 H 1.08994 * 110.37266 * 3.32263 * 14 13 12 43 43 H 1.08994 * 110.72128 * 263.53557 * 15 14 13 44 44 H 1.09004 * 110.87235 * 140.33564 * 15 14 13 45 45 H 1.08995 * 110.64219 * 204.57171 * 16 15 14 46 46 H 1.09001 * 110.78370 * 81.56925 * 16 15 14 47 47 H 1.09001 * 109.47669 * 289.99941 * 18 17 13 48 48 H 1.09005 * 109.47129 * 50.00400 * 18 17 13 49 49 H 0.96997 * 119.99795 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.9783 2.1766 0.0903 6 6 3.9714 0.3328 1.1648 7 8 4.5875 -0.6880 0.9691 8 8 3.6753 0.7081 2.4191 9 6 4.1273 -0.1607 3.4911 10 7 3.9766 0.5641 -1.2509 11 6 4.8803 1.2000 -2.2183 12 6 4.7089 0.3994 -3.5301 13 6 4.2276 -0.9626 -3.0003 14 6 3.2058 -1.5835 -3.9588 15 6 3.8137 -2.9514 -4.3533 16 6 4.8003 -3.2404 -3.1932 17 7 5.3549 -1.8984 -2.8716 18 6 5.9100 -1.8701 -1.5119 19 6 6.8896 -3.0032 -1.3456 20 1 7.0810 -3.6767 -2.1678 21 6 7.5423 -3.1794 -0.1439 22 7 7.3097 -2.3590 0.8572 23 14 8.7571 -4.5835 0.0619 24 1 9.8566 -4.4356 -0.9252 25 1 9.3182 -4.5549 1.4366 26 1 8.0617 -5.8765 -0.1616 27 6 3.6077 -0.6641 -1.6618 28 8 2.8804 -1.4155 -1.0474 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8463 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.6845 -1.1491 3.3689 35 1 5.2137 -0.2428 3.4587 36 1 3.8226 0.2574 4.4504 37 1 5.9120 1.1397 -1.8718 38 1 4.5948 2.2407 -2.3715 39 1 5.6593 0.3008 -4.0547 40 1 3.9559 0.8573 -4.1718 41 1 2.2497 -1.7244 -3.4549 42 1 3.0819 -0.9549 -4.8406 43 1 4.3451 -2.8781 -5.3021 44 1 3.0419 -3.7195 -4.4035 45 1 5.5914 -3.9148 -3.5206 46 1 4.2749 -3.6552 -2.3329 47 1 6.4208 -0.9213 -1.3476 48 1 5.1027 -1.9785 -0.7876 49 1 7.7686 -2.4832 1.7027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031842.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:14 Heat of formation + Delta-G solvation = -119.637856 kcal Electronic energy + Delta-G solvation = -33913.539778 eV Core-core repulsion = 29649.556538 eV Total energy + Delta-G solvation = -4263.983240 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.92799 -39.57575 -37.75023 -36.67087 -35.73690 -35.45254 -33.03174 -32.46570 -30.84162 -29.11032 -27.36616 -27.23676 -26.16916 -26.06359 -23.98122 -23.31146 -22.01717 -21.42511 -20.33855 -19.82111 -18.10951 -17.19135 -16.67782 -16.28844 -16.14885 -15.82377 -15.65129 -15.40171 -15.15919 -14.87205 -14.60850 -14.24366 -13.95351 -13.72812 -13.35804 -13.13704 -12.82401 -12.67909 -12.34681 -12.33309 -12.09950 -12.02476 -11.79132 -11.61492 -11.51364 -11.41232 -11.30310 -11.05392 -10.80603 -10.69272 -10.55582 -10.32512 -10.18676 -10.11893 -10.04707 -9.75058 -9.65495 -9.42946 -9.13103 -8.83176 -8.24134 -8.23511 -7.16464 -5.77361 -3.80583 2.83438 3.00111 3.39371 3.42726 3.45630 3.48837 3.60464 3.89787 4.56480 4.71646 4.86810 5.00079 5.06088 5.07775 5.15707 5.28586 5.36455 5.38225 5.43984 5.46281 5.51785 5.54384 5.58285 5.62651 5.68975 5.71231 5.80251 5.82288 5.83336 6.01745 6.14185 6.22636 6.27278 6.34151 6.47226 6.48422 6.79320 6.88920 6.90822 7.02565 7.33818 7.37637 7.64680 7.75278 7.90266 8.12705 8.35671 8.57031 8.69074 8.98946 9.24628 9.79815 11.29380 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009802 B = 0.006321 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.905829 B = 4428.428364 C = 6174.929488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.345 6.345 3 C 0.053 3.947 4 C 0.180 3.820 5 H 0.128 0.872 6 C 0.421 3.579 7 O -0.409 6.409 8 O -0.375 6.375 9 C 0.044 3.956 10 N -0.614 5.614 11 C 0.107 3.893 12 C -0.113 4.113 13 C 0.060 3.940 14 C -0.108 4.108 15 C -0.125 4.125 16 C 0.052 3.948 17 N -0.488 5.488 18 C 0.173 3.827 19 C -0.518 4.518 20 H 0.057 0.943 21 C 0.061 3.939 22 N -0.870 5.870 23 Si 0.887 3.113 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.527 3.473 28 O -0.479 6.479 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.078 0.922 46 H 0.047 0.953 47 H 0.025 0.975 48 H 0.038 0.962 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.810 12.077 -3.751 17.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.263 6.263 3 C -0.025 4.025 4 C 0.074 3.926 5 H 0.145 0.855 6 C 0.256 3.744 7 O -0.287 6.287 8 O -0.293 6.293 9 C -0.050 4.050 10 N -0.352 5.352 11 C -0.016 4.016 12 C -0.152 4.152 13 C -0.034 4.034 14 C -0.146 4.146 15 C -0.163 4.163 16 C -0.076 4.076 17 N -0.213 5.213 18 C 0.048 3.952 19 C -0.557 4.557 20 H 0.075 0.925 21 C -0.141 4.141 22 N -0.508 5.508 23 Si 0.716 3.284 24 H -0.205 1.205 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.312 3.688 28 O -0.349 6.349 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.065 0.935 47 H 0.043 0.957 48 H 0.055 0.945 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.415 11.307 -3.527 16.449 hybrid contribution 0.228 -0.731 1.152 1.383 sum -11.187 10.576 -2.375 15.577 Atomic orbital electron populations 1.22668 0.82305 1.02539 0.98854 1.88468 1.18367 1.24402 1.95036 1.22850 0.91394 0.87319 1.00984 1.20247 0.94016 0.96209 0.82168 0.85492 1.23722 0.79455 0.87330 0.83849 1.91066 1.31928 1.21637 1.84113 1.86347 1.74317 1.52549 1.16119 1.23080 1.00803 0.94174 0.86899 1.48162 1.49671 1.18737 1.18629 1.22137 0.94420 0.96234 0.88763 1.22585 1.03227 0.93704 0.95639 1.22111 0.92843 0.95548 0.92941 1.22252 0.97736 0.96958 0.97690 1.22570 0.98456 0.95981 0.99272 1.23041 0.96040 0.92662 0.95820 1.65096 1.21519 1.03179 1.31511 1.20187 0.95699 0.97415 0.81902 1.21058 1.24019 1.12915 0.97699 0.92527 1.24939 0.96965 0.96185 0.96051 1.70077 1.41584 1.36547 1.02547 0.86752 0.81696 0.83198 0.76779 1.20451 1.21605 1.20542 1.21018 0.79406 0.80305 0.88023 1.90720 1.35088 1.48748 1.60294 0.94746 0.94788 0.89869 0.91641 0.92314 0.92258 0.91711 0.89236 0.90840 0.91199 0.88342 0.90657 0.91281 0.91296 0.91414 0.91908 0.90377 0.93501 0.95730 0.94461 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.54 16 2 O -0.35 -5.93 6.68 -59.45 -0.40 -6.32 16 3 C 0.05 0.72 5.62 37.16 0.21 0.93 16 4 C 0.18 2.83 3.35 -69.08 -0.23 2.60 16 5 H 0.13 1.48 8.07 -51.93 -0.42 1.06 16 6 C 0.42 8.43 6.47 36.01 0.23 8.66 16 7 O -0.41 -10.44 12.76 -24.25 -0.31 -10.75 16 8 O -0.38 -6.54 10.49 -39.25 -0.41 -6.95 16 9 C 0.04 0.71 10.56 101.05 1.07 1.78 16 10 N -0.61 -10.83 2.63 -166.24 -0.44 -11.27 16 11 C 0.11 1.56 6.80 -2.98 -0.02 1.54 16 12 C -0.11 -1.66 6.33 -25.42 -0.16 -1.82 16 13 C 0.06 1.13 0.79 -132.18 -0.10 1.02 16 14 C -0.11 -1.75 6.18 -25.66 -0.16 -1.91 16 15 C -0.12 -2.06 7.07 -24.72 -0.17 -2.23 16 16 C 0.05 1.12 5.55 -1.75 -0.01 1.11 16 17 N -0.49 -11.02 5.02 -218.20 -1.09 -12.12 16 18 C 0.17 4.73 3.83 -4.98 -0.02 4.71 16 19 C -0.52 -15.37 8.56 -34.44 -0.29 -15.66 16 20 H 0.06 1.65 6.56 -52.49 -0.34 1.31 16 21 C 0.06 1.83 5.46 -17.82 -0.10 1.74 16 22 N -0.87 -26.88 13.29 55.43 0.74 -26.15 16 23 Si 0.89 22.76 29.54 -169.99 -5.02 17.74 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 26 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 27 C 0.53 10.95 3.23 -11.13 -0.04 10.91 16 28 O -0.48 -11.62 12.59 -24.39 -0.31 -11.93 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 1.04 8.13 -51.93 -0.42 0.62 16 35 H 0.06 1.13 8.13 -51.93 -0.42 0.71 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.22 7.46 -51.93 -0.39 0.83 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 1.45 8.07 -51.93 -0.42 1.03 16 40 H 0.07 0.87 7.57 -51.92 -0.39 0.48 16 41 H 0.07 1.19 7.44 -51.93 -0.39 0.80 16 42 H 0.07 0.91 7.40 -51.93 -0.38 0.52 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.08 1.69 7.20 -51.93 -0.37 1.31 16 46 H 0.05 1.15 8.01 -51.93 -0.42 0.73 16 47 H 0.02 0.73 7.07 -51.93 -0.37 0.36 16 48 H 0.04 1.15 4.09 -51.93 -0.21 0.94 16 49 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -38.26 381.91 -8.06 -46.32 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.89 Total: 0.74 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: 1.31 Total: 14.92 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.79 Total: -49.53 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -1.43 Total: -35.95 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.26 -8.06 -46.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031842.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.315 kcal (2) G-P(sol) polarization free energy of solvation -38.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds