Wall clock time and date at job start Sat Apr 11 2020 06:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99974 * 2 1 4 4 C 1.53002 * 109.47634 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47148 * 185.00267 * 4 3 2 6 6 C 1.50700 * 109.46765 * 305.00584 * 4 3 2 7 7 O 1.20827 * 119.99975 * 120.00165 * 6 4 3 8 8 O 1.34226 * 120.00120 * 299.99159 * 6 4 3 9 9 C 1.45198 * 116.99917 * 180.02562 * 8 6 4 10 10 N 1.46503 * 109.46597 * 65.00066 * 4 3 2 11 11 C 1.46860 * 124.37175 * 120.14800 * 10 4 3 12 12 C 1.54642 * 105.44840 * 197.12223 * 11 10 4 13 13 C 1.53861 * 101.58647 * 335.05138 * 12 11 10 14 14 C 1.53244 * 110.60041 * 144.19136 * 13 12 11 15 15 C 1.54801 * 104.80740 * 122.15802 * 14 13 12 16 16 C 1.55005 * 102.94410 * 21.90224 * 15 14 13 17 17 N 1.47078 * 110.70570 * 263.78244 * 13 12 11 18 18 C 1.46893 * 111.00113 * 93.72774 * 17 13 12 19 19 C 1.50700 * 109.47231 * 169.99940 * 18 17 13 20 20 H 1.07997 * 120.00093 * 0.02562 * 19 18 17 21 21 C 1.37882 * 120.00304 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99716 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99932 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47167 * 60.00517 * 23 21 19 25 25 H 1.48508 * 109.46681 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47340 * 300.00063 * 23 21 19 27 27 C 1.34664 * 124.37065 * 300.02513 * 10 4 3 28 28 O 1.21283 * 125.08311 * 359.14746 * 27 10 4 29 29 H 1.08991 * 109.47305 * 299.99393 * 1 2 3 30 30 H 1.09003 * 109.47426 * 59.99842 * 1 2 3 31 31 H 1.09004 * 109.47132 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46999 * 60.00070 * 3 2 1 33 33 H 1.09007 * 109.47286 * 300.00383 * 3 2 1 34 34 H 1.08995 * 109.47438 * 299.99812 * 9 8 6 35 35 H 1.08997 * 109.47610 * 60.00464 * 9 8 6 36 36 H 1.09001 * 109.46696 * 180.02562 * 9 8 6 37 37 H 1.09005 * 110.42969 * 78.04909 * 11 10 4 38 38 H 1.08996 * 110.17553 * 316.06974 * 11 10 4 39 39 H 1.09002 * 111.00593 * 216.97700 * 12 11 10 40 40 H 1.09008 * 110.99991 * 93.12996 * 12 11 10 41 41 H 1.08996 * 110.36755 * 240.98646 * 14 13 12 42 42 H 1.08994 * 110.37266 * 3.32263 * 14 13 12 43 43 H 1.08994 * 110.72128 * 263.53557 * 15 14 13 44 44 H 1.09004 * 110.87235 * 140.33564 * 15 14 13 45 45 H 1.08995 * 110.64219 * 204.57171 * 16 15 14 46 46 H 1.09001 * 110.78370 * 81.56925 * 16 15 14 47 47 H 1.09001 * 109.47669 * 289.99941 * 18 17 13 48 48 H 1.09005 * 109.47129 * 50.00400 * 18 17 13 49 49 H 0.96997 * 119.99795 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.9783 2.1766 0.0903 6 6 3.9714 0.3328 1.1648 7 8 4.5875 -0.6880 0.9691 8 8 3.6753 0.7081 2.4191 9 6 4.1273 -0.1607 3.4911 10 7 3.9766 0.5641 -1.2509 11 6 4.8803 1.2000 -2.2183 12 6 4.7089 0.3994 -3.5301 13 6 4.2276 -0.9626 -3.0003 14 6 3.2058 -1.5835 -3.9588 15 6 3.8137 -2.9514 -4.3533 16 6 4.8003 -3.2404 -3.1932 17 7 5.3549 -1.8984 -2.8716 18 6 5.9100 -1.8701 -1.5119 19 6 6.8896 -3.0032 -1.3456 20 1 7.0810 -3.6767 -2.1678 21 6 7.5423 -3.1794 -0.1439 22 7 7.3097 -2.3590 0.8572 23 14 8.7571 -4.5835 0.0619 24 1 9.8566 -4.4356 -0.9252 25 1 9.3182 -4.5549 1.4366 26 1 8.0617 -5.8765 -0.1616 27 6 3.6077 -0.6641 -1.6618 28 8 2.8804 -1.4155 -1.0474 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8463 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.6845 -1.1491 3.3689 35 1 5.2137 -0.2428 3.4587 36 1 3.8226 0.2574 4.4504 37 1 5.9120 1.1397 -1.8718 38 1 4.5948 2.2407 -2.3715 39 1 5.6593 0.3008 -4.0547 40 1 3.9559 0.8573 -4.1718 41 1 2.2497 -1.7244 -3.4549 42 1 3.0819 -0.9549 -4.8406 43 1 4.3451 -2.8781 -5.3021 44 1 3.0419 -3.7195 -4.4035 45 1 5.5914 -3.9148 -3.5206 46 1 4.2749 -3.6552 -2.3329 47 1 6.4208 -0.9213 -1.3476 48 1 5.1027 -1.9785 -0.7876 49 1 7.7686 -2.4832 1.7027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031842.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:14 Heat of formation + Delta-G solvation = -148.280502 kcal Electronic energy + Delta-G solvation = -33914.781817 eV Core-core repulsion = 29649.556538 eV Total energy + Delta-G solvation = -4265.225278 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.36742 -41.08906 -39.00472 -38.08948 -37.28334 -36.96391 -35.13085 -33.79249 -32.70311 -30.42343 -28.72977 -28.53250 -28.14589 -27.26502 -25.29258 -24.84101 -23.77122 -22.77705 -21.99013 -21.24761 -19.58227 -18.58973 -18.28377 -18.03638 -17.65526 -17.31159 -17.05317 -16.74422 -16.55719 -16.35049 -16.19472 -15.87493 -15.45670 -15.01129 -14.83497 -14.62994 -14.20342 -14.17959 -14.02458 -13.86947 -13.58690 -13.36166 -13.23884 -13.08967 -12.99592 -12.93136 -12.73976 -12.72191 -12.52671 -12.17076 -12.05392 -11.83933 -11.80283 -11.74102 -11.65844 -11.39852 -11.33928 -11.02415 -10.71547 -10.49729 -10.46130 -9.60135 -9.00967 -8.07381 -6.19520 1.32354 1.36780 1.43271 1.44046 1.54286 2.02558 2.21148 2.39455 2.89637 3.19918 3.28838 3.57338 3.69164 3.82667 3.84470 3.94387 4.06514 4.13977 4.28001 4.29106 4.33675 4.34572 4.36560 4.45555 4.49551 4.53015 4.59603 4.67126 4.71180 4.77593 4.84683 4.87882 4.94462 5.05264 5.11654 5.17705 5.23754 5.33129 5.43735 5.49005 5.63476 5.64282 5.74424 6.03632 6.23901 6.27807 6.36764 6.62481 6.93684 7.05168 7.45510 7.52424 8.97991 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009802 B = 0.006321 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.905829 B = 4428.428364 C = 6174.929488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.055 3.945 4 C 0.172 3.828 5 H 0.174 0.826 6 C 0.415 3.585 7 O -0.475 6.475 8 O -0.364 6.364 9 C 0.046 3.954 10 N -0.614 5.614 11 C 0.101 3.899 12 C -0.103 4.103 13 C 0.042 3.958 14 C -0.101 4.101 15 C -0.110 4.110 16 C 0.048 3.952 17 N -0.491 5.491 18 C 0.203 3.797 19 C -0.542 4.542 20 H 0.054 0.946 21 C 0.006 3.994 22 N -0.898 5.898 23 Si 0.957 3.043 24 H -0.265 1.265 25 H -0.284 1.284 26 H -0.277 1.277 27 C 0.517 3.483 28 O -0.526 6.526 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.034 0.966 35 H 0.042 0.958 36 H 0.141 0.859 37 H 0.042 0.958 38 H 0.128 0.872 39 H 0.096 0.904 40 H 0.122 0.878 41 H 0.055 0.945 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.068 0.932 46 H -0.001 1.001 47 H -0.006 1.006 48 H 0.004 0.996 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.751 14.540 -5.794 20.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C -0.022 4.022 4 C 0.066 3.934 5 H 0.191 0.809 6 C 0.253 3.747 7 O -0.358 6.358 8 O -0.281 6.281 9 C -0.048 4.048 10 N -0.350 5.350 11 C -0.020 4.020 12 C -0.140 4.140 13 C -0.052 4.052 14 C -0.139 4.139 15 C -0.148 4.148 16 C -0.080 4.080 17 N -0.216 5.216 18 C 0.077 3.923 19 C -0.581 4.581 20 H 0.072 0.928 21 C -0.194 4.194 22 N -0.536 5.536 23 Si 0.783 3.217 24 H -0.189 1.189 25 H -0.210 1.210 26 H -0.202 1.202 27 C 0.304 3.696 28 O -0.399 6.399 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.159 0.841 37 H 0.061 0.939 38 H 0.146 0.854 39 H 0.115 0.885 40 H 0.140 0.860 41 H 0.074 0.926 42 H 0.132 0.868 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.018 0.982 47 H 0.012 0.988 48 H 0.022 0.978 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.362 13.831 -5.588 19.374 hybrid contribution 0.497 -1.480 1.873 2.438 sum -11.865 12.351 -3.715 17.525 Atomic orbital electron populations 1.22748 0.80611 1.02288 1.00743 1.88432 1.20475 1.26740 1.95444 1.22995 0.89162 0.86471 1.03569 1.20822 0.96208 0.96813 0.79525 0.80928 1.24833 0.77717 0.86908 0.85224 1.91064 1.35113 1.24642 1.84984 1.86362 1.73762 1.52207 1.15801 1.23199 0.99298 0.93645 0.88670 1.48293 1.49136 1.18186 1.19410 1.22387 0.92532 0.99167 0.87922 1.22663 1.04416 0.90908 0.96059 1.22456 0.92400 0.97036 0.93296 1.22286 0.96058 0.97111 0.98441 1.22533 0.97584 0.96844 0.97863 1.23016 0.96601 0.92106 0.96256 1.65001 1.24004 1.04503 1.28069 1.19570 0.93964 0.94856 0.83884 1.21462 1.24845 1.13819 0.97954 0.92766 1.25843 0.98932 0.98937 0.95708 1.70268 1.42370 1.38176 1.02766 0.85643 0.79372 0.79589 0.77139 1.18940 1.20967 1.20234 1.21333 0.78939 0.80841 0.88498 1.90682 1.37343 1.50237 1.61648 0.92808 0.92730 0.91365 0.89243 0.89174 0.94740 0.93940 0.84144 0.93937 0.85399 0.88502 0.85973 0.92623 0.86756 0.88658 0.90388 0.91399 0.98199 0.98818 0.97838 0.93890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.39 -13.35 6.68 -125.82 -0.84 -14.19 16 3 C 0.06 1.37 5.62 71.98 0.40 1.77 16 4 C 0.17 5.18 3.35 44.25 0.15 5.33 16 5 H 0.17 3.46 8.07 -2.39 -0.02 3.44 16 6 C 0.41 17.11 6.47 71.24 0.46 17.57 16 7 O -0.48 -25.96 12.76 27.22 0.35 -25.61 16 8 O -0.36 -12.81 10.49 -51.38 -0.54 -13.35 16 9 C 0.05 1.52 10.56 113.37 1.20 2.72 16 10 N -0.61 -21.15 2.63 -798.32 -2.10 -23.24 16 11 C 0.10 2.74 6.80 86.87 0.59 3.33 16 12 C -0.10 -2.69 6.33 31.44 0.20 -2.49 16 13 C 0.04 1.55 0.79 3.06 0.00 1.55 16 14 C -0.10 -3.04 6.18 31.29 0.19 -2.85 16 15 C -0.11 -3.48 7.07 31.89 0.23 -3.25 16 16 C 0.05 2.16 5.55 86.64 0.48 2.64 16 17 N -0.49 -22.82 5.02 -844.25 -4.24 -27.05 16 18 C 0.20 11.81 3.83 85.56 0.33 12.13 16 19 C -0.54 -33.82 8.56 25.60 0.22 -33.60 16 20 H 0.05 3.30 6.56 -2.91 -0.02 3.29 16 21 C 0.01 0.37 5.46 84.66 0.46 0.83 16 22 N -0.90 -58.42 13.29 21.45 0.28 -58.14 16 23 Si 0.96 48.38 29.54 68.60 2.03 50.41 16 24 H -0.26 -12.69 7.11 99.48 0.71 -11.99 16 25 H -0.28 -13.97 7.11 99.48 0.71 -13.27 16 26 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 27 C 0.52 21.83 3.23 87.61 0.28 22.11 16 28 O -0.53 -26.84 12.59 25.60 0.32 -26.52 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.03 1.30 8.13 -2.39 -0.02 1.28 16 35 H 0.04 1.59 8.13 -2.39 -0.02 1.57 16 36 H 0.14 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.04 1.41 7.46 -2.38 -0.02 1.39 16 38 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.10 2.60 8.07 -2.39 -0.02 2.58 16 40 H 0.12 2.09 7.57 -2.38 -0.02 2.07 16 41 H 0.05 1.85 7.44 -2.39 -0.02 1.83 16 42 H 0.11 2.42 7.40 -2.39 -0.02 2.40 16 43 H 0.09 2.51 8.14 -2.39 -0.02 2.50 16 44 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.07 3.07 7.20 -2.39 -0.02 3.05 16 46 H 0.00 -0.03 8.01 -2.39 -0.02 -0.05 16 47 H -0.01 -0.39 7.07 -2.39 -0.02 -0.41 16 48 H 0.00 0.26 4.09 -2.38 -0.01 0.25 16 49 H 0.25 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -94.17 381.91 2.66 -91.51 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.94 Total: 16.35 kcal Atomic # 6 Polarization: 23.39 SS G_CDS: 6.44 Total: 29.84 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -6.05 Total: -108.43 kcal Atomic # 8 Polarization: -78.96 SS G_CDS: -0.71 Total: -79.67 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.41 kcal Total: -94.17 2.66 -91.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031842.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.771 kcal (2) G-P(sol) polarization free energy of solvation -94.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds