Wall clock time and date at job start Sat Apr 11 2020 06:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 113.99969 * 2 1 4 4 C 1.53000 * 109.46959 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.46599 * 173.11292 * 4 3 2 6 6 C 1.50695 * 109.47482 * 53.12019 * 4 3 2 7 7 O 1.20833 * 119.99666 * 240.00169 * 6 4 3 8 8 O 1.34227 * 120.00391 * 59.99494 * 6 4 3 9 9 C 1.45204 * 116.99871 * 180.02562 * 8 6 4 10 10 N 1.46498 * 109.47109 * 293.10937 * 4 3 2 11 11 C 1.33350 * 117.28422 * 67.18498 * 10 4 3 12 12 O 1.21284 * 118.80195 * 359.77151 * 11 10 4 13 13 C 1.50347 * 122.40167 * 179.79343 * 11 10 4 14 14 C 1.52894 * 109.30485 * 338.35654 * 13 11 10 15 15 C 1.53119 * 109.32712 * 52.84931 * 14 13 11 16 16 H 1.08993 * 111.92332 * 59.69467 * 15 14 13 17 17 C 1.44626 * 117.29361 * 247.20441 * 10 4 3 18 18 H 1.09004 * 110.92129 * 45.92180 * 17 10 4 19 19 C 1.54886 * 110.63226 * 283.03045 * 17 10 4 20 20 C 1.54521 * 102.59281 * 203.33137 * 19 17 10 21 21 N 1.47667 * 107.05362 * 22.99786 * 20 19 17 22 22 C 1.46897 * 111.00085 * 123.13821 * 21 20 19 23 23 C 1.50695 * 109.47425 * 69.87170 * 22 21 20 24 24 H 1.08003 * 120.00161 * 359.97438 * 23 22 21 25 25 C 1.37876 * 119.99813 * 179.97438 * 23 22 21 26 26 N 1.31518 * 120.00353 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99857 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46969 * 179.97438 * 27 25 23 29 29 H 1.48494 * 109.47347 * 300.00212 * 27 25 23 30 30 H 1.48502 * 109.46961 * 60.00290 * 27 25 23 31 31 H 1.08998 * 109.47305 * 60.00235 * 1 2 3 32 32 H 1.08998 * 109.47034 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47727 * 300.00140 * 1 2 3 34 34 H 1.08999 * 109.47402 * 59.99426 * 3 2 1 35 35 H 1.09002 * 109.46748 * 299.99926 * 3 2 1 36 36 H 1.09000 * 109.47036 * 60.00541 * 9 8 6 37 37 H 1.08998 * 109.46725 * 179.97438 * 9 8 6 38 38 H 1.08999 * 109.47313 * 299.99969 * 9 8 6 39 39 H 1.08996 * 109.49959 * 218.40950 * 13 11 10 40 40 H 1.08993 * 109.49694 * 98.30454 * 13 11 10 41 41 H 1.08997 * 109.49287 * 292.88887 * 14 13 11 42 42 H 1.09003 * 109.48881 * 172.80505 * 14 13 11 43 43 H 1.08997 * 110.78490 * 85.05940 * 19 17 10 44 44 H 1.08996 * 110.94640 * 321.68464 * 19 17 10 45 45 H 1.08996 * 109.92135 * 263.64638 * 20 19 17 46 46 H 1.08998 * 110.08331 * 142.43216 * 20 19 17 47 47 H 1.08999 * 109.46897 * 309.86413 * 22 21 20 48 48 H 1.09009 * 109.46717 * 189.87119 * 22 21 20 49 49 H 0.96993 * 119.99902 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9781 2.1732 -0.1239 6 6 3.9684 0.2952 -1.1374 7 8 4.5850 -0.7187 -0.9100 8 8 3.6691 0.6292 -2.4025 9 6 4.1175 -0.2748 -3.4467 10 7 3.9799 0.6055 1.2694 11 6 3.6492 -0.6635 1.5115 12 8 3.0020 -1.2671 0.6823 13 6 4.0491 -1.3732 2.7752 14 6 5.2539 -0.6637 3.3938 15 6 4.9393 0.8266 3.5499 16 1 4.0723 0.9948 4.1886 17 6 4.7405 1.4574 2.1567 18 1 4.2755 2.4392 2.2470 19 6 6.2016 1.5950 1.6617 20 6 6.9607 1.9736 2.9533 21 7 6.1460 1.4982 4.0895 22 6 6.9173 0.5871 4.9455 23 6 7.9824 1.3642 5.6752 24 1 8.0773 2.4286 5.5184 25 6 8.8359 0.7165 6.5430 26 7 8.7207 -0.5797 6.7336 27 14 10.1567 1.6797 7.4470 28 1 10.9354 0.7588 8.3133 29 1 11.0647 2.3195 6.4614 30 1 9.5194 2.7268 8.2853 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.6885 1.8465 0.8899 35 1 1.6885 1.8464 -0.8900 36 1 3.6743 -1.2583 -3.2908 37 1 3.8104 0.1118 -4.4184 38 1 5.2039 -0.3566 -3.4146 39 1 4.3134 -2.4052 2.5449 40 1 3.2173 -1.3586 3.4794 41 1 6.1210 -0.7865 2.7448 42 1 5.4671 -1.0950 4.3720 43 1 6.2851 2.3872 0.9178 44 1 6.5678 0.6499 1.2608 45 1 7.0811 3.0554 3.0098 46 1 7.9374 1.4900 2.9689 47 1 7.3853 -0.1810 4.3298 48 1 6.2509 0.1167 5.6688 49 1 9.3214 -1.0354 7.3438 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032029.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:31 Heat of formation + Delta-G solvation = -126.018481 kcal Electronic energy + Delta-G solvation = -32593.584198 eV Core-core repulsion = 28329.324273 eV Total energy + Delta-G solvation = -4264.259925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.39841 -39.92604 -38.37414 -37.55552 -36.27923 -35.17321 -33.31500 -32.72664 -31.23450 -29.45636 -27.86995 -27.78423 -26.42194 -26.18011 -24.38243 -23.36201 -22.84561 -21.84536 -20.76640 -19.48223 -18.14167 -17.75604 -17.01685 -16.94786 -16.36850 -16.26673 -15.95503 -15.85811 -15.57759 -15.40429 -14.61813 -14.47767 -14.27803 -13.96084 -13.65171 -13.54509 -13.31527 -13.03938 -12.84275 -12.49540 -12.42570 -12.18412 -12.15968 -12.00067 -11.82305 -11.65886 -11.37620 -11.32835 -11.10370 -10.95039 -10.75968 -10.70683 -10.55406 -10.48476 -10.32314 -10.10101 -9.84513 -9.67412 -9.29501 -9.07993 -8.57095 -8.45107 -7.33979 -6.05042 -4.06616 2.31363 2.45013 3.03574 3.16826 3.32084 3.36617 3.39145 3.65978 4.39153 4.52172 4.61654 4.65886 4.78831 4.92745 4.96420 5.02315 5.05397 5.09581 5.12074 5.21129 5.22767 5.28195 5.30878 5.32605 5.42926 5.48862 5.49590 5.63480 5.64851 5.67768 5.73363 5.98114 6.02971 6.16076 6.31476 6.40081 6.50090 6.54458 6.63428 6.66648 7.08290 7.10349 7.28242 7.61856 7.75583 7.85617 7.97046 8.11370 8.46703 8.55892 9.00878 9.57894 11.05478 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020575 B = 0.003075 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.554965 B = 9103.201251 C = 9499.822372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.341 6.341 3 C 0.051 3.949 4 C 0.159 3.841 5 H 0.133 0.867 6 C 0.464 3.536 7 O -0.475 6.475 8 O -0.365 6.365 9 C 0.041 3.959 10 N -0.586 5.586 11 C 0.521 3.479 12 O -0.494 6.494 13 C -0.127 4.127 14 C -0.147 4.147 15 C 0.072 3.928 16 H 0.094 0.906 17 C 0.137 3.863 18 H 0.095 0.905 19 C -0.158 4.158 20 C 0.055 3.945 21 N -0.519 5.519 22 C 0.189 3.811 23 C -0.510 4.510 24 H 0.062 0.938 25 C 0.056 3.944 26 N -0.898 5.898 27 Si 0.898 3.102 28 H -0.288 1.288 29 H -0.277 1.277 30 H -0.276 1.276 31 H 0.034 0.966 32 H 0.082 0.918 33 H 0.036 0.964 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.000 1.000 48 H 0.031 0.969 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.093 4.686 -16.629 22.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.259 6.259 3 C -0.027 4.027 4 C 0.052 3.948 5 H 0.150 0.850 6 C 0.303 3.697 7 O -0.359 6.359 8 O -0.282 6.282 9 C -0.053 4.053 10 N -0.321 5.321 11 C 0.310 3.690 12 O -0.367 6.367 13 C -0.167 4.167 14 C -0.186 4.186 15 C -0.037 4.037 16 H 0.112 0.888 17 C 0.032 3.968 18 H 0.113 0.887 19 C -0.198 4.198 20 C -0.074 4.074 21 N -0.243 5.243 22 C 0.064 3.936 23 C -0.548 4.548 24 H 0.080 0.920 25 C -0.145 4.145 26 N -0.537 5.537 27 Si 0.725 3.275 28 H -0.214 1.214 29 H -0.203 1.203 30 H -0.202 1.202 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.018 0.982 48 H 0.049 0.951 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.162 4.068 -16.549 22.158 hybrid contribution 1.042 -0.131 -0.015 1.050 sum -13.120 3.936 -16.564 21.494 Atomic orbital electron populations 1.22726 0.82653 1.02518 0.99141 1.88577 1.18101 1.24130 1.95103 1.22865 0.90909 0.87520 1.01451 1.20555 0.94868 0.96628 0.82740 0.84963 1.23459 0.76932 0.85842 0.83429 1.90681 1.36514 1.24500 1.84161 1.86423 1.73769 1.51682 1.16292 1.23167 1.00170 0.93753 0.88229 1.46935 1.55888 1.12740 1.16565 1.20151 0.79071 0.80836 0.88986 1.90763 1.36978 1.62928 1.46069 1.21584 1.00042 1.00430 0.94669 1.22301 0.97184 0.96216 1.02912 1.22768 0.96713 0.91953 0.92234 0.88850 1.21851 0.91231 0.93715 0.89958 0.88710 1.23350 0.95275 1.01990 0.99184 1.22704 0.96862 1.00641 0.87191 1.64017 1.05863 1.38193 1.16253 1.19940 0.92060 0.90485 0.91114 1.21124 1.14200 0.95070 1.24452 0.91990 1.24972 0.97749 0.94891 0.96901 1.69935 1.38654 1.08125 1.37011 0.86570 0.81557 0.79658 0.79668 1.21405 1.20315 1.20176 0.94698 0.89898 0.94564 0.91817 0.91627 0.91949 0.88454 0.92209 0.88698 0.88817 0.91269 0.89039 0.91415 0.91085 0.91381 0.91710 0.98237 0.95068 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.34 -4.68 6.43 -60.35 -0.39 -5.07 16 3 C 0.05 0.54 5.64 37.16 0.21 0.75 16 4 C 0.16 1.90 2.98 -69.09 -0.21 1.70 16 5 H 0.13 1.14 7.83 -51.92 -0.41 0.74 16 6 C 0.46 6.76 6.06 36.00 0.22 6.98 16 7 O -0.48 -8.68 13.50 -26.70 -0.36 -9.04 16 8 O -0.36 -4.50 10.49 -39.25 -0.41 -4.92 16 9 C 0.04 0.40 10.56 101.05 1.07 1.47 16 10 N -0.59 -8.15 2.34 -159.94 -0.37 -8.52 16 11 C 0.52 8.49 6.02 -11.79 -0.07 8.42 16 12 O -0.49 -9.28 10.88 -27.23 -0.30 -9.57 16 13 C -0.13 -1.93 6.08 -28.11 -0.17 -2.10 16 14 C -0.15 -2.49 3.87 -26.72 -0.10 -2.59 16 15 C 0.07 1.17 3.49 -66.26 -0.23 0.94 16 16 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 17 C 0.14 1.85 3.04 -67.30 -0.20 1.64 16 18 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 19 C -0.16 -2.27 5.98 -24.94 -0.15 -2.42 16 20 C 0.05 0.96 6.36 -2.60 -0.02 0.94 16 21 N -0.52 -10.21 5.14 -224.52 -1.15 -11.36 16 22 C 0.19 4.59 3.10 -4.98 -0.02 4.58 16 23 C -0.51 -13.78 8.66 -34.44 -0.30 -14.07 16 24 H 0.06 1.66 7.78 -52.48 -0.41 1.25 16 25 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 26 N -0.90 -25.98 13.29 55.43 0.74 -25.25 16 27 Si 0.90 21.22 29.54 -169.99 -5.02 16.19 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 30 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 31 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 39 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.07 1.29 6.53 -51.93 -0.34 0.95 16 42 H 0.09 1.70 6.37 -51.93 -0.33 1.37 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 1.16 7.39 -51.93 -0.38 0.78 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.06 1.30 7.32 -51.93 -0.38 0.92 16 47 H 0.00 0.00 6.75 -51.93 -0.35 -0.35 16 48 H 0.03 0.82 7.27 -51.92 -0.38 0.44 16 49 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 380.74 15.07 5.74 5.74 Total: -1.00 -33.94 380.74 -8.52 -42.46 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -8.03 Total: 0.26 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 1.04 Total: 9.07 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.79 Total: -45.13 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -1.46 Total: -28.59 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.94 -8.52 -42.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032029.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.563 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds