Wall clock time and date at job start Sat Apr 11 2020 06:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 113.99969 * 2 1 4 4 C 1.53000 * 109.46959 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.46599 * 173.11292 * 4 3 2 6 6 C 1.50695 * 109.47482 * 53.12019 * 4 3 2 7 7 O 1.20833 * 119.99666 * 240.00169 * 6 4 3 8 8 O 1.34227 * 120.00391 * 59.99494 * 6 4 3 9 9 C 1.45204 * 116.99871 * 180.02562 * 8 6 4 10 10 N 1.46498 * 109.47109 * 293.10937 * 4 3 2 11 11 C 1.33350 * 117.28422 * 67.18498 * 10 4 3 12 12 O 1.21284 * 118.80195 * 359.77151 * 11 10 4 13 13 C 1.50347 * 122.40167 * 179.79343 * 11 10 4 14 14 C 1.52894 * 109.30485 * 338.35654 * 13 11 10 15 15 C 1.53119 * 109.32712 * 52.84931 * 14 13 11 16 16 H 1.08993 * 111.92332 * 59.69467 * 15 14 13 17 17 C 1.44626 * 117.29361 * 247.20441 * 10 4 3 18 18 H 1.09004 * 110.92129 * 45.92180 * 17 10 4 19 19 C 1.54886 * 110.63226 * 283.03045 * 17 10 4 20 20 C 1.54521 * 102.59281 * 203.33137 * 19 17 10 21 21 N 1.47667 * 107.05362 * 22.99786 * 20 19 17 22 22 C 1.46897 * 111.00085 * 123.13821 * 21 20 19 23 23 C 1.50695 * 109.47425 * 69.87170 * 22 21 20 24 24 H 1.08003 * 120.00161 * 359.97438 * 23 22 21 25 25 C 1.37876 * 119.99813 * 179.97438 * 23 22 21 26 26 N 1.31518 * 120.00353 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99857 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46969 * 179.97438 * 27 25 23 29 29 H 1.48494 * 109.47347 * 300.00212 * 27 25 23 30 30 H 1.48502 * 109.46961 * 60.00290 * 27 25 23 31 31 H 1.08998 * 109.47305 * 60.00235 * 1 2 3 32 32 H 1.08998 * 109.47034 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47727 * 300.00140 * 1 2 3 34 34 H 1.08999 * 109.47402 * 59.99426 * 3 2 1 35 35 H 1.09002 * 109.46748 * 299.99926 * 3 2 1 36 36 H 1.09000 * 109.47036 * 60.00541 * 9 8 6 37 37 H 1.08998 * 109.46725 * 179.97438 * 9 8 6 38 38 H 1.08999 * 109.47313 * 299.99969 * 9 8 6 39 39 H 1.08996 * 109.49959 * 218.40950 * 13 11 10 40 40 H 1.08993 * 109.49694 * 98.30454 * 13 11 10 41 41 H 1.08997 * 109.49287 * 292.88887 * 14 13 11 42 42 H 1.09003 * 109.48881 * 172.80505 * 14 13 11 43 43 H 1.08997 * 110.78490 * 85.05940 * 19 17 10 44 44 H 1.08996 * 110.94640 * 321.68464 * 19 17 10 45 45 H 1.08996 * 109.92135 * 263.64638 * 20 19 17 46 46 H 1.08998 * 110.08331 * 142.43216 * 20 19 17 47 47 H 1.08999 * 109.46897 * 309.86413 * 22 21 20 48 48 H 1.09009 * 109.46717 * 189.87119 * 22 21 20 49 49 H 0.96993 * 119.99902 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9781 2.1732 -0.1239 6 6 3.9684 0.2952 -1.1374 7 8 4.5850 -0.7187 -0.9100 8 8 3.6691 0.6292 -2.4025 9 6 4.1175 -0.2748 -3.4467 10 7 3.9799 0.6055 1.2694 11 6 3.6492 -0.6635 1.5115 12 8 3.0020 -1.2671 0.6823 13 6 4.0491 -1.3732 2.7752 14 6 5.2539 -0.6637 3.3938 15 6 4.9393 0.8266 3.5499 16 1 4.0723 0.9948 4.1886 17 6 4.7405 1.4574 2.1567 18 1 4.2755 2.4392 2.2470 19 6 6.2016 1.5950 1.6617 20 6 6.9607 1.9736 2.9533 21 7 6.1460 1.4982 4.0895 22 6 6.9173 0.5871 4.9455 23 6 7.9824 1.3642 5.6752 24 1 8.0773 2.4286 5.5184 25 6 8.8359 0.7165 6.5430 26 7 8.7207 -0.5797 6.7336 27 14 10.1567 1.6797 7.4470 28 1 10.9354 0.7588 8.3133 29 1 11.0647 2.3195 6.4614 30 1 9.5194 2.7268 8.2853 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.6885 1.8465 0.8899 35 1 1.6885 1.8464 -0.8900 36 1 3.6743 -1.2583 -3.2908 37 1 3.8104 0.1118 -4.4184 38 1 5.2039 -0.3566 -3.4146 39 1 4.3134 -2.4052 2.5449 40 1 3.2173 -1.3586 3.4794 41 1 6.1210 -0.7865 2.7448 42 1 5.4671 -1.0950 4.3720 43 1 6.2851 2.3872 0.9178 44 1 6.5678 0.6499 1.2608 45 1 7.0811 3.0554 3.0098 46 1 7.9374 1.4900 2.9689 47 1 7.3853 -0.1810 4.3298 48 1 6.2509 0.1167 5.6688 49 1 9.3214 -1.0354 7.3438 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032029.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:30 Heat of formation + Delta-G solvation = -148.744499 kcal Electronic energy + Delta-G solvation = -32594.569672 eV Core-core repulsion = 28329.324273 eV Total energy + Delta-G solvation = -4265.245399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.54688 -41.08943 -39.62878 -38.49417 -37.36822 -36.44919 -34.97648 -34.33469 -32.58525 -30.72626 -29.27070 -28.60998 -27.95084 -27.22571 -25.45361 -24.65047 -24.43865 -23.09233 -21.97640 -20.91468 -19.32788 -18.80540 -18.36871 -18.12879 -17.95290 -17.32288 -17.04634 -16.96006 -16.86982 -16.38107 -16.22307 -15.77033 -15.49567 -15.30868 -14.86994 -14.79004 -14.50830 -14.20589 -14.06667 -13.98335 -13.66618 -13.58445 -13.22411 -13.12745 -13.00771 -12.92199 -12.78193 -12.76869 -12.53143 -12.38516 -12.17385 -12.13624 -11.84372 -11.73953 -11.66195 -11.54260 -11.41438 -11.24318 -10.56795 -10.47493 -10.41752 -9.69513 -8.99440 -8.17063 -6.26683 1.27830 1.42794 1.44222 1.45663 1.53383 1.88749 2.07185 2.42746 2.91438 3.15572 3.23878 3.45473 3.61540 3.68967 3.77124 3.88010 3.92370 4.12884 4.16011 4.23848 4.29139 4.29693 4.32408 4.37070 4.43819 4.49481 4.53986 4.59253 4.63781 4.68944 4.74565 4.81039 4.87702 4.90942 4.95320 5.07838 5.15428 5.17738 5.27028 5.35515 5.39478 5.48604 5.68801 6.06810 6.30809 6.35414 6.44318 6.58731 6.81332 6.90025 7.35236 7.43065 8.93156 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020575 B = 0.003075 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.554965 B = 9103.201251 C = 9499.822372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.380 6.380 3 C 0.049 3.951 4 C 0.152 3.848 5 H 0.176 0.824 6 C 0.461 3.539 7 O -0.524 6.524 8 O -0.359 6.359 9 C 0.036 3.964 10 N -0.582 5.582 11 C 0.518 3.482 12 O -0.519 6.519 13 C -0.122 4.122 14 C -0.135 4.135 15 C 0.069 3.931 16 H 0.108 0.892 17 C 0.151 3.849 18 H 0.138 0.862 19 C -0.146 4.146 20 C 0.054 3.946 21 N -0.524 5.524 22 C 0.210 3.790 23 C -0.524 4.524 24 H 0.064 0.936 25 C 0.001 3.999 26 N -0.935 5.935 27 Si 0.965 3.035 28 H -0.287 1.287 29 H -0.269 1.269 30 H -0.267 1.267 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.045 0.955 37 H 0.136 0.864 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.042 0.958 42 H 0.063 0.937 43 H 0.108 0.892 44 H 0.043 0.957 45 H 0.088 0.912 46 H 0.029 0.971 47 H -0.031 1.031 48 H 0.005 0.995 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.336 8.062 -17.828 24.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.299 6.299 3 C -0.028 4.028 4 C 0.047 3.953 5 H 0.193 0.807 6 C 0.303 3.697 7 O -0.411 6.411 8 O -0.275 6.275 9 C -0.057 4.057 10 N -0.316 5.316 11 C 0.307 3.693 12 O -0.394 6.394 13 C -0.162 4.162 14 C -0.174 4.174 15 C -0.040 4.040 16 H 0.126 0.874 17 C 0.047 3.953 18 H 0.156 0.844 19 C -0.186 4.186 20 C -0.074 4.074 21 N -0.247 5.247 22 C 0.084 3.916 23 C -0.562 4.562 24 H 0.082 0.918 25 C -0.196 4.196 26 N -0.575 5.575 27 Si 0.790 3.210 28 H -0.213 1.213 29 H -0.194 1.194 30 H -0.191 1.191 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.064 0.936 37 H 0.155 0.845 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.131 0.869 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.126 0.874 44 H 0.062 0.938 45 H 0.106 0.894 46 H 0.048 0.952 47 H -0.014 1.014 48 H 0.023 0.977 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.426 7.493 -17.778 24.701 hybrid contribution 1.413 -1.220 0.274 1.887 sum -14.013 6.273 -17.504 23.283 Atomic orbital electron populations 1.22793 0.81286 1.02470 1.00542 1.88525 1.19773 1.26166 1.95436 1.23028 0.89413 0.86776 1.03598 1.21039 0.96354 0.97514 0.80406 0.80674 1.24076 0.75705 0.85430 0.84508 1.90673 1.38859 1.26684 1.84858 1.86419 1.73357 1.51804 1.15961 1.23399 0.99997 0.93164 0.89185 1.46828 1.55199 1.12030 1.17526 1.20125 0.78927 0.81679 0.88588 1.90762 1.38304 1.63687 1.46680 1.21530 0.99699 0.99806 0.95186 1.22073 0.97011 0.97459 1.00822 1.22893 0.95554 0.90941 0.94612 0.87447 1.21861 0.91022 0.94810 0.87655 0.84433 1.23254 0.95138 1.01945 0.98215 1.22717 0.95432 1.01149 0.88142 1.63913 1.06458 1.37013 1.17364 1.19483 0.91316 0.90089 0.90728 1.21508 1.14862 0.95319 1.24538 0.91801 1.25876 1.00118 0.95788 0.97861 1.70076 1.39764 1.09830 1.37855 0.85493 0.78707 0.78299 0.78468 1.21288 1.19355 1.19146 0.92942 0.90837 0.93373 0.89812 0.89110 0.93585 0.84549 0.92534 0.89568 0.86912 0.93928 0.91787 0.87405 0.93794 0.89427 0.95211 1.01359 0.97670 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.38 -9.67 6.43 -124.96 -0.80 -10.47 16 3 C 0.05 0.86 5.64 71.98 0.41 1.27 16 4 C 0.15 3.12 2.98 44.24 0.13 3.25 16 5 H 0.18 2.01 7.83 -2.38 -0.02 2.00 16 6 C 0.46 12.66 6.06 71.23 0.43 13.10 16 7 O -0.52 -19.22 13.50 29.54 0.40 -18.82 16 8 O -0.36 -8.07 10.49 -51.39 -0.54 -8.60 16 9 C 0.04 0.66 10.56 113.37 1.20 1.86 16 10 N -0.58 -14.85 2.34 -779.12 -1.82 -16.67 16 11 C 0.52 16.66 6.02 87.77 0.53 17.19 16 12 O -0.52 -19.50 10.88 28.30 0.31 -19.19 16 13 C -0.12 -3.82 6.08 29.70 0.18 -3.64 16 14 C -0.13 -4.79 3.87 30.60 0.12 -4.67 16 15 C 0.07 2.18 3.49 45.10 0.16 2.33 16 16 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 17 C 0.15 3.61 3.04 46.40 0.14 3.75 16 18 H 0.14 2.31 8.14 -2.38 -0.02 2.29 16 19 C -0.15 -3.89 5.98 31.76 0.19 -3.70 16 20 C 0.05 1.85 6.36 86.67 0.55 2.40 16 21 N -0.52 -20.58 5.14 -864.24 -4.45 -25.03 16 22 C 0.21 10.69 3.10 85.56 0.27 10.95 16 23 C -0.52 -28.90 8.66 25.60 0.22 -28.68 16 24 H 0.06 3.42 7.78 -2.91 -0.02 3.40 16 25 C 0.00 0.08 5.46 84.65 0.46 0.55 16 26 N -0.93 -55.91 13.29 21.45 0.28 -55.63 16 27 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 28 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 29 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 30 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.05 1.00 8.13 -2.39 -0.02 0.98 16 37 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 39 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 40 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 41 H 0.04 1.71 6.53 -2.39 -0.02 1.70 16 42 H 0.06 2.60 6.37 -2.39 -0.02 2.58 16 43 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.04 1.43 7.39 -2.39 -0.02 1.41 16 45 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 46 H 0.03 1.22 7.32 -2.39 -0.02 1.20 16 47 H -0.03 -1.75 6.75 -2.39 -0.02 -1.77 16 48 H 0.01 0.29 7.27 -2.38 -0.02 0.27 16 49 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -78.25 380.74 2.57 -75.68 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.94 Total: 15.28 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 6.23 Total: 17.68 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -5.98 Total: -97.33 kcal Atomic # 8 Polarization: -56.45 SS G_CDS: -0.64 Total: -57.09 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -78.25 2.57 -75.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032029.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.069 kcal (2) G-P(sol) polarization free energy of solvation -78.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds