Wall clock time and date at job start Sat Apr 11 2020 06:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 113.99794 * 2 1 4 4 C 1.53004 * 109.46758 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47014 * 186.79716 * 4 3 2 6 6 C 1.50700 * 109.46914 * 306.79207 * 4 3 2 7 7 O 1.20831 * 119.99663 * 120.00442 * 6 4 3 8 8 O 1.34230 * 120.00202 * 300.27846 * 6 4 3 9 9 C 1.45205 * 116.99678 * 179.72821 * 8 6 4 10 10 N 1.46496 * 109.47241 * 66.79893 * 4 3 2 11 11 C 1.33377 * 117.27910 * 292.81977 * 10 4 3 12 12 O 1.21278 * 118.87411 * 359.53676 * 11 10 4 13 13 C 1.50374 * 122.25363 * 179.26749 * 11 10 4 14 14 C 1.52879 * 109.33536 * 338.23303 * 13 11 10 15 15 C 1.53130 * 109.40466 * 53.03814 * 14 13 11 16 16 H 1.09003 * 111.74682 * 60.14734 * 15 14 13 17 17 C 1.44544 * 117.28416 * 113.08558 * 10 4 3 18 18 H 1.08998 * 109.94562 * 48.17877 * 17 10 4 19 19 C 1.54636 * 110.93528 * 285.47834 * 17 10 4 20 20 C 1.54402 * 102.91299 * 204.36647 * 19 17 10 21 21 N 1.47457 * 107.24478 * 21.71827 * 20 19 17 22 22 C 1.46900 * 111.00289 * 123.26432 * 21 20 19 23 23 C 1.50704 * 109.46829 * 49.16232 * 22 21 20 24 24 H 1.07997 * 120.00252 * 359.97438 * 23 22 21 25 25 C 1.37874 * 119.99540 * 179.97438 * 23 22 21 26 26 N 1.31512 * 120.00669 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99622 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46932 * 60.00502 * 27 25 23 29 29 H 1.48502 * 109.47283 * 180.02562 * 27 25 23 30 30 H 1.48496 * 109.47458 * 299.99962 * 27 25 23 31 31 H 1.08999 * 109.47172 * 60.00058 * 1 2 3 32 32 H 1.09004 * 109.47430 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46827 * 299.99622 * 1 2 3 34 34 H 1.08995 * 109.47438 * 60.00182 * 3 2 1 35 35 H 1.09002 * 109.47148 * 299.99747 * 3 2 1 36 36 H 1.09001 * 109.46906 * 299.99832 * 9 8 6 37 37 H 1.08993 * 109.47081 * 59.99970 * 9 8 6 38 38 H 1.08998 * 109.46626 * 180.02562 * 9 8 6 39 39 H 1.09000 * 109.63111 * 218.17922 * 13 11 10 40 40 H 1.09001 * 109.30316 * 98.09396 * 13 11 10 41 41 H 1.08993 * 109.48834 * 293.05427 * 14 13 11 42 42 H 1.09008 * 109.48059 * 173.01248 * 14 13 11 43 43 H 1.09000 * 110.72678 * 322.72192 * 19 17 10 44 44 H 1.09000 * 110.72361 * 86.01243 * 19 17 10 45 45 H 1.09008 * 109.88611 * 262.30869 * 20 19 17 46 46 H 1.09007 * 110.02412 * 141.20321 * 20 19 17 47 47 H 1.08995 * 109.47349 * 169.16092 * 22 21 20 48 48 H 1.09000 * 109.46791 * 289.16181 * 22 21 20 49 49 H 0.97000 * 120.00817 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9782 2.1732 0.1210 6 6 3.9694 0.2964 1.1368 7 8 4.5858 -0.7178 0.9101 8 8 3.6663 0.6291 2.4015 9 6 4.1111 -0.2763 3.4459 10 7 3.9787 0.6038 -1.2704 11 6 3.6476 -0.6657 -1.5106 12 8 3.0120 -1.2732 -0.6754 13 6 4.0304 -1.3676 -2.7842 14 6 4.3109 -0.3287 -3.8701 15 6 5.3353 0.6847 -3.3522 16 1 6.2779 0.2062 -3.0862 17 6 4.7435 1.4524 -2.1560 18 1 5.5400 1.9476 -1.6005 19 6 3.8325 2.4934 -2.8471 20 6 4.6152 2.8372 -4.1329 21 7 5.5331 1.7143 -4.3994 22 6 5.3050 1.1541 -5.7381 23 6 5.2719 2.2699 -6.7505 24 1 5.4063 3.2928 -6.4314 25 6 5.0699 1.9847 -8.0842 26 7 4.9057 0.7391 -8.4729 27 14 5.0281 3.3678 -9.3391 28 1 6.3237 4.0932 -9.3196 29 1 4.7977 2.8016 -10.6925 30 1 3.9291 4.3082 -9.0029 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.6886 1.8464 0.8899 35 1 1.6885 1.8464 -0.8900 36 1 3.6679 -1.2594 3.2874 37 1 5.1976 -0.3586 3.4170 38 1 3.8013 0.1093 4.4171 39 1 3.2153 -2.0169 -3.1037 40 1 4.9259 -1.9646 -2.6115 41 1 3.3861 0.1879 -4.1267 42 1 4.7073 -0.8262 -4.7554 43 1 2.8637 2.0571 -3.0903 44 1 3.7125 3.3773 -2.2207 45 1 5.1848 3.7549 -3.9861 46 1 3.9256 2.9586 -4.9684 47 1 6.1111 0.4633 -5.9850 48 1 4.3537 0.6223 -5.7521 49 1 4.7632 0.5384 -9.4112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032030.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:35 Heat of formation + Delta-G solvation = -123.180206 kcal Electronic energy + Delta-G solvation = -32667.183230 eV Core-core repulsion = 28403.046382 eV Total energy + Delta-G solvation = -4264.136848 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.39535 -39.95272 -38.35534 -37.54394 -36.28820 -35.20107 -33.36052 -32.72461 -31.21347 -29.48538 -27.96218 -27.78259 -26.38798 -26.13555 -24.22044 -23.52834 -22.94115 -21.81125 -20.73988 -19.55933 -17.93976 -17.81433 -16.95108 -16.89152 -16.57406 -16.23996 -16.01547 -15.81936 -15.51271 -15.28232 -14.64754 -14.57547 -14.26750 -13.87686 -13.72135 -13.44212 -13.32670 -13.08180 -12.88933 -12.50694 -12.44022 -12.22960 -12.16414 -12.00513 -11.82652 -11.55831 -11.32669 -11.23031 -11.14503 -10.90388 -10.79137 -10.75361 -10.51835 -10.47476 -10.34007 -10.07206 -9.91340 -9.63478 -9.24376 -9.03683 -8.57326 -8.51131 -7.28829 -6.09407 -4.10541 2.29181 2.45789 3.00781 3.22703 3.28654 3.33888 3.35968 3.69168 4.36675 4.54572 4.57024 4.70221 4.83022 4.93478 4.98342 5.00825 5.06468 5.10518 5.12176 5.22516 5.26163 5.27979 5.31693 5.36567 5.43758 5.48184 5.51424 5.65950 5.67728 5.72009 5.76689 5.98357 6.04829 6.15360 6.31755 6.40260 6.51095 6.63482 6.65707 6.67629 7.13734 7.15540 7.34372 7.62895 7.70408 7.84091 7.94053 8.11715 8.43430 8.57315 8.96049 9.53386 11.01454 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020923 B = 0.003080 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.906227 B = 9087.756048 C = 9159.145295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.342 6.342 3 C 0.051 3.949 4 C 0.160 3.840 5 H 0.133 0.867 6 C 0.464 3.536 7 O -0.477 6.477 8 O -0.364 6.364 9 C 0.041 3.959 10 N -0.587 5.587 11 C 0.521 3.479 12 O -0.495 6.495 13 C -0.129 4.129 14 C -0.144 4.144 15 C 0.072 3.928 16 H 0.092 0.908 17 C 0.138 3.862 18 H 0.088 0.912 19 C -0.155 4.155 20 C 0.052 3.948 21 N -0.522 5.522 22 C 0.180 3.820 23 C -0.518 4.518 24 H 0.063 0.937 25 C 0.059 3.941 26 N -0.895 5.895 27 Si 0.896 3.104 28 H -0.276 1.276 29 H -0.288 1.288 30 H -0.277 1.277 31 H 0.036 0.964 32 H 0.083 0.917 33 H 0.035 0.965 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.032 0.968 48 H 0.009 0.991 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.633 1.828 20.116 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.260 6.260 3 C -0.027 4.027 4 C 0.053 3.947 5 H 0.150 0.850 6 C 0.303 3.697 7 O -0.361 6.361 8 O -0.281 6.281 9 C -0.053 4.053 10 N -0.322 5.322 11 C 0.310 3.690 12 O -0.368 6.368 13 C -0.169 4.169 14 C -0.182 4.182 15 C -0.037 4.037 16 H 0.110 0.890 17 C 0.033 3.967 18 H 0.106 0.894 19 C -0.195 4.195 20 C -0.077 4.077 21 N -0.246 5.246 22 C 0.055 3.945 23 C -0.556 4.556 24 H 0.081 0.919 25 C -0.143 4.143 26 N -0.534 5.534 27 Si 0.724 3.276 28 H -0.201 1.201 29 H -0.214 1.214 30 H -0.203 1.203 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.050 0.950 48 H 0.027 0.973 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.157 1.004 20.296 20.965 hybrid contribution -0.905 0.563 -0.802 1.334 sum -6.062 1.567 19.495 20.475 Atomic orbital electron populations 1.22727 0.82568 1.02527 0.99185 1.88547 1.18171 1.24175 1.95119 1.22865 0.90842 0.87507 1.01496 1.20565 0.95079 0.96475 0.82586 0.84972 1.23525 0.76862 0.85814 0.83451 1.90666 1.36745 1.24487 1.84197 1.86431 1.73737 1.51619 1.16312 1.23167 1.00149 0.93754 0.88254 1.46924 1.56016 1.12690 1.16525 1.20157 0.78963 0.80910 0.88995 1.90759 1.37119 1.62688 1.46194 1.21618 1.03749 0.98938 0.92605 1.22259 1.00391 0.97039 0.98561 1.22677 0.97225 0.92933 0.90858 0.89032 1.21727 0.92939 0.91123 0.90881 0.89403 1.23270 0.99399 0.98355 0.98446 1.22715 0.94385 0.95402 0.95175 1.63908 1.50478 1.06457 1.03789 1.20071 0.96163 0.95731 0.82540 1.21185 1.49218 0.93616 0.91582 0.91903 1.24958 0.95316 0.95564 0.98492 1.69930 1.49131 1.17749 1.16567 0.86593 0.78608 0.82077 0.80328 1.20150 1.21352 1.20307 0.94511 0.89888 0.94689 0.91678 0.91736 0.91939 0.92236 0.88454 0.88703 0.88769 0.91192 0.89033 0.91259 0.91220 0.91706 0.90508 0.95011 0.97302 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.34 -4.92 6.46 -60.31 -0.39 -5.31 16 3 C 0.05 0.58 5.63 37.16 0.21 0.79 16 4 C 0.16 1.95 2.93 -69.08 -0.20 1.75 16 5 H 0.13 1.16 7.81 -51.93 -0.41 0.75 16 6 C 0.46 6.68 6.06 36.01 0.22 6.90 16 7 O -0.48 -8.50 13.47 -26.72 -0.36 -8.86 16 8 O -0.36 -4.44 10.49 -39.26 -0.41 -4.85 16 9 C 0.04 0.39 10.56 101.05 1.07 1.46 16 10 N -0.59 -8.29 2.36 -160.29 -0.38 -8.67 16 11 C 0.52 8.61 6.03 -11.77 -0.07 8.54 16 12 O -0.49 -9.39 10.89 -27.23 -0.30 -9.68 16 13 C -0.13 -1.98 6.08 -28.10 -0.17 -2.15 16 14 C -0.14 -2.40 3.74 -26.73 -0.10 -2.50 16 15 C 0.07 1.19 3.51 -66.44 -0.23 0.96 16 16 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 17 C 0.14 1.89 2.99 -67.61 -0.20 1.69 16 18 H 0.09 1.10 8.12 -51.93 -0.42 0.68 16 19 C -0.16 -2.08 5.97 -25.14 -0.15 -2.23 16 20 C 0.05 0.89 5.76 -2.78 -0.02 0.88 16 21 N -0.52 -10.22 5.29 -224.99 -1.19 -11.41 16 22 C 0.18 4.31 3.80 -4.97 -0.02 4.29 16 23 C -0.52 -13.63 7.91 -34.44 -0.27 -13.90 16 24 H 0.06 1.62 6.86 -52.49 -0.36 1.26 16 25 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 26 N -0.89 -25.49 13.29 55.43 0.74 -24.76 16 27 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 29 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 30 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 37 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.07 1.25 6.71 -51.93 -0.35 0.90 16 42 H 0.09 1.69 6.59 -51.92 -0.34 1.35 16 43 H 0.07 0.99 7.61 -51.93 -0.40 0.59 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 46 H 0.08 1.52 6.49 -51.93 -0.34 1.18 16 47 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.01 0.23 5.47 -51.93 -0.28 -0.05 16 49 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 378.50 15.07 5.70 5.70 Total: -1.00 -33.18 378.50 -8.48 -41.66 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.95 Total: 1.00 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 1.07 Total: 9.36 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: -0.83 Total: -44.83 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -1.46 Total: -28.70 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.18 -8.48 -41.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032030.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.516 kcal (2) G-P(sol) polarization free energy of solvation -33.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds