Wall clock time and date at job start Sat Apr 11 2020 06:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45209 * 109.46945 * 2 1 4 4 C 1.34229 * 116.99936 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00070 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99958 * 179.97438 * 4 3 2 7 7 H 1.09007 * 109.46869 * 60.00337 * 6 4 3 8 8 C 1.52994 * 109.47491 * 300.00045 * 6 4 3 9 9 N 1.46505 * 109.47107 * 179.97438 * 6 4 3 10 10 C 1.34262 * 119.37610 * 60.00094 * 9 6 4 11 11 O 1.21282 * 118.97143 * 2.24388 * 10 9 6 12 12 C 1.50286 * 122.05477 * 181.96049 * 10 9 6 13 13 O 1.42813 * 110.49505 * 341.61257 * 12 10 9 14 14 C 1.43376 * 113.34441 * 51.29693 * 13 12 10 15 15 C 1.45917 * 119.37690 * 239.98296 * 9 6 4 16 16 C 1.53502 * 113.75760 * 295.66757 * 15 9 6 17 17 N 1.48040 * 86.04730 * 91.14790 * 16 15 9 18 18 C 1.46896 * 111.00259 * 137.29485 * 17 16 15 19 19 C 1.53006 * 109.47294 * 90.55840 * 18 17 16 20 20 C 1.50693 * 109.47137 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00222 * 0.02562 * 20 19 18 22 22 C 1.37883 * 120.00090 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99506 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00402 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47312 * 59.99625 * 24 22 20 26 26 H 1.48493 * 109.47366 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47142 * 300.00102 * 24 22 20 28 28 C 1.48040 * 90.83205 * 24.37030 * 17 16 15 29 29 H 1.09001 * 109.47011 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46714 * 299.99325 * 1 2 3 31 31 H 1.08997 * 109.47418 * 59.99490 * 1 2 3 32 32 H 1.09003 * 109.47191 * 240.00631 * 2 1 3 33 33 H 1.08989 * 109.47607 * 120.00220 * 2 1 3 34 34 H 1.09003 * 109.47334 * 179.97438 * 8 6 4 35 35 H 1.08998 * 109.47187 * 299.99846 * 8 6 4 36 36 H 1.09004 * 109.46942 * 59.99838 * 8 6 4 37 37 H 1.09001 * 109.26995 * 101.87172 * 12 10 9 38 38 H 1.08999 * 109.26775 * 221.34526 * 12 10 9 39 39 H 1.09002 * 109.70782 * 54.06697 * 14 13 12 40 40 H 1.09006 * 109.70871 * 174.67813 * 14 13 12 41 41 H 1.09003 * 113.78026 * 205.43083 * 16 15 9 42 42 H 1.09002 * 113.78156 * 336.86121 * 16 15 9 43 43 H 1.08997 * 109.47376 * 210.55648 * 18 17 16 44 44 H 1.09000 * 109.47088 * 330.56119 * 18 17 16 45 45 H 1.09005 * 109.47035 * 300.00064 * 19 18 17 46 46 H 1.09002 * 109.47140 * 59.99411 * 19 18 17 47 47 H 0.97002 * 119.99621 * 179.97438 * 23 22 20 48 48 H 1.09005 * 113.77899 * 221.34575 * 28 17 16 49 49 H 1.08996 * 113.88320 * 89.92490 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9375 -0.0012 7 1 3.5850 3.4699 0.8889 8 6 3.4487 3.6841 -1.2504 9 7 5.3837 2.8609 -0.0010 10 6 6.0109 2.2418 -1.0140 11 8 5.3509 1.7952 -1.9283 12 6 7.5056 2.0903 -1.0532 13 8 8.1257 3.0180 -0.1619 14 6 7.5816 2.9822 1.1642 15 6 6.1317 3.4592 1.0997 16 6 5.9844 4.9844 1.1906 17 7 4.8419 4.7175 2.0935 18 6 4.8598 5.6257 3.2479 19 6 4.0528 6.8836 2.9198 20 6 4.0707 7.8150 4.1043 21 1 4.6046 7.5378 5.0013 22 6 3.4063 9.0216 4.0426 23 7 2.7574 9.3598 2.9498 24 14 3.4290 10.1765 5.5106 25 1 4.8311 10.5545 5.8215 26 1 2.6467 11.3977 5.1918 27 1 2.8278 9.4956 6.6854 28 6 5.4045 3.3953 2.4498 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8898 34 1 3.8649 4.6916 -1.2506 35 1 3.7843 3.1518 -2.1403 36 1 2.3601 3.7412 -1.2500 37 1 7.7721 1.0753 -0.7586 38 1 7.8593 2.2745 -2.0676 39 1 7.6165 1.9628 1.5484 40 1 8.1566 3.6408 1.8153 41 1 6.8243 5.4788 1.6788 42 1 5.7003 5.4554 0.2496 43 1 4.4189 5.1259 4.1103 44 1 5.8889 5.9035 3.4757 45 1 4.4938 7.3835 2.0573 46 1 3.0237 6.6059 2.6918 47 1 2.2897 10.2085 2.9065 48 1 4.6591 2.6023 2.5103 49 1 6.0729 3.4176 3.3105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274039210.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:46 Heat of formation + Delta-G solvation = -111.200077 kcal Electronic energy + Delta-G solvation = -31919.027951 eV Core-core repulsion = 27655.410601 eV Total energy + Delta-G solvation = -4263.617350 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.84451 -40.24618 -39.14807 -37.75687 -36.54935 -35.13970 -33.45455 -32.23439 -31.48918 -30.61658 -29.24940 -27.15975 -26.38605 -25.75809 -24.88829 -23.31036 -22.95792 -21.44670 -20.89323 -20.29318 -18.69824 -18.06791 -17.30558 -17.12912 -16.62633 -16.46930 -16.13705 -15.83259 -15.39973 -15.08491 -14.77280 -14.68214 -14.53423 -14.27102 -14.02244 -13.72494 -13.50469 -13.17058 -12.93658 -12.73999 -12.55602 -12.50625 -12.29292 -12.15714 -11.93449 -11.75836 -11.62247 -11.58470 -11.42070 -11.19048 -11.01166 -10.87271 -10.66523 -10.60177 -10.59544 -10.25928 -9.92196 -9.58017 -9.38456 -9.14373 -8.91031 -8.49138 -8.37250 -6.03728 -4.07151 2.13125 2.28892 2.48793 2.91755 3.29893 3.35213 3.36566 3.41036 3.93017 4.08688 4.31650 4.41438 4.44005 4.64880 4.77020 4.79705 4.84897 4.98402 5.05052 5.10512 5.12764 5.21752 5.27757 5.32242 5.36334 5.38660 5.46785 5.51380 5.61141 5.62099 5.68878 5.77288 5.81619 5.87509 6.02873 6.14560 6.21685 6.35668 6.42545 6.53482 6.64157 6.92088 7.16526 7.27145 7.66958 7.75042 7.80077 7.97740 8.00115 8.35936 8.99817 9.57029 11.07310 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010787 B = 0.003428 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.093671 B = 8165.588654 C = 9903.997311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 O -0.353 6.353 4 C 0.460 3.540 5 O -0.503 6.503 6 C 0.149 3.851 7 H 0.158 0.842 8 C -0.159 4.159 9 N -0.563 5.563 10 C 0.500 3.500 11 O -0.527 6.527 12 C 0.051 3.949 13 O -0.365 6.365 14 C 0.064 3.936 15 C 0.103 3.897 16 C 0.011 3.989 17 N -0.477 5.477 18 C 0.029 3.971 19 C 0.034 3.966 20 C -0.526 4.526 21 H 0.053 0.947 22 C 0.060 3.940 23 N -0.891 5.891 24 Si 0.892 3.108 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C -0.005 4.005 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.130 0.870 39 H 0.067 0.933 40 H 0.120 0.880 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.035 0.965 45 H 0.016 0.984 46 H 0.024 0.976 47 H 0.261 0.739 48 H 0.087 0.913 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.033 -17.753 -6.095 19.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.270 6.270 4 C 0.302 3.698 5 O -0.389 6.389 6 C 0.045 3.955 7 H 0.175 0.825 8 C -0.217 4.217 9 N -0.295 5.295 10 C 0.289 3.711 11 O -0.404 6.404 12 C -0.028 4.028 13 O -0.283 6.283 14 C -0.014 4.014 15 C 0.016 3.984 16 C -0.119 4.119 17 N -0.200 5.200 18 C -0.098 4.098 19 C -0.004 4.004 20 C -0.565 4.565 21 H 0.071 0.929 22 C -0.142 4.142 23 N -0.530 5.530 24 Si 0.720 3.280 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.203 1.203 28 C -0.135 4.135 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.148 0.852 39 H 0.085 0.915 40 H 0.138 0.862 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.053 0.947 45 H 0.034 0.966 46 H 0.042 0.958 47 H 0.071 0.929 48 H 0.106 0.894 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.246 -17.987 -6.960 19.748 hybrid contribution 0.511 0.368 1.452 1.583 sum 4.757 -17.619 -5.508 19.063 Atomic orbital electron populations 1.21804 0.92559 1.02789 1.03783 1.22986 0.95372 0.80399 1.02308 1.86515 1.24235 1.32145 1.84096 1.24076 0.80754 0.92988 0.71998 1.90610 1.60398 1.42952 1.44965 1.20827 0.79718 0.89718 1.05285 0.82471 1.22112 1.02426 1.00745 0.96391 1.47018 1.04924 1.55613 1.21988 1.21044 0.91566 0.76940 0.81590 1.90682 1.66442 1.47445 1.35799 1.22757 0.87858 0.95176 0.97024 1.88167 1.59618 1.60096 1.20377 1.23047 0.90924 1.02347 0.85054 1.22503 0.92200 0.95600 0.88092 1.24403 0.94278 0.93290 0.99910 1.68551 1.35458 1.01741 1.14254 1.22887 0.99835 0.95794 0.91276 1.18955 0.95363 0.89367 0.96669 1.21136 1.32639 1.02597 1.00135 0.92903 1.24983 0.95318 0.97984 0.95874 1.69961 1.33431 1.22755 1.26834 0.86670 0.78066 0.80297 0.83016 1.20296 1.21250 1.20255 1.24310 0.98227 0.96046 0.94944 0.90405 0.91261 0.91372 0.91430 0.91510 0.90548 0.90379 0.90371 0.89341 0.85188 0.91456 0.86176 0.89611 0.88746 0.91967 0.94655 0.96574 0.95792 0.92884 0.89424 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.29 37.16 0.38 -0.87 16 2 C 0.06 0.70 6.19 37.16 0.23 0.93 16 3 O -0.35 -4.94 10.12 -39.26 -0.40 -5.34 16 4 C 0.46 7.06 6.60 36.00 0.24 7.30 16 5 O -0.50 -8.62 14.37 -25.48 -0.37 -8.98 16 6 C 0.15 2.15 2.34 -69.08 -0.16 1.99 16 7 H 0.16 2.36 5.23 -51.92 -0.27 2.09 16 8 C -0.16 -2.22 9.04 37.15 0.34 -1.88 16 9 N -0.56 -7.69 2.42 -155.94 -0.38 -8.06 16 10 C 0.50 7.07 6.32 -11.42 -0.07 7.00 16 11 O -0.53 -8.92 13.33 -14.39 -0.19 -9.12 16 12 C 0.05 0.55 6.94 35.81 0.25 0.80 16 13 O -0.36 -3.98 10.84 -35.23 -0.38 -4.36 16 14 C 0.06 0.61 6.09 37.04 0.23 0.84 16 15 C 0.10 1.24 1.56 -135.16 -0.21 1.03 16 16 C 0.01 0.15 7.15 -2.94 -0.02 0.13 16 17 N -0.48 -7.41 4.37 -240.34 -1.05 -8.46 16 18 C 0.03 0.55 4.74 -3.82 -0.02 0.53 16 19 C 0.03 0.83 5.28 -27.88 -0.15 0.69 16 20 C -0.53 -14.29 9.11 -34.44 -0.31 -14.61 16 21 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 24 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 C -0.01 -0.07 6.53 -2.95 -0.02 -0.09 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 33 H 0.07 0.72 8.13 -51.94 -0.42 0.29 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.18 6.00 -51.93 -0.31 0.87 16 36 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 40 H 0.12 0.93 7.86 -51.93 -0.41 0.52 16 41 H 0.09 1.10 7.23 -51.93 -0.38 0.73 16 42 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 44 H 0.04 0.63 7.38 -51.93 -0.38 0.25 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.09 1.11 7.47 -51.93 -0.39 0.72 16 49 H 0.09 0.89 7.87 -51.93 -0.41 0.49 16 LS Contribution 392.19 15.07 5.91 5.91 Total: -1.00 -33.28 392.19 -8.54 -41.82 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -8.00 Total: 0.61 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 0.60 Total: 5.37 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: -0.69 Total: -41.98 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -1.34 Total: -27.80 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.28 -8.54 -41.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039210.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.381 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds