Wall clock time and date at job start Sat Apr 11 2020 06:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45209 * 109.46945 * 2 1 4 4 C 1.34229 * 116.99936 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00070 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99958 * 179.97438 * 4 3 2 7 7 H 1.09007 * 109.46869 * 60.00337 * 6 4 3 8 8 C 1.52994 * 109.47491 * 300.00045 * 6 4 3 9 9 N 1.46505 * 109.47107 * 179.97438 * 6 4 3 10 10 C 1.34262 * 119.37610 * 60.00094 * 9 6 4 11 11 O 1.21282 * 118.97143 * 2.24388 * 10 9 6 12 12 C 1.50286 * 122.05477 * 181.96049 * 10 9 6 13 13 O 1.42813 * 110.49505 * 341.61257 * 12 10 9 14 14 C 1.43376 * 113.34441 * 51.29693 * 13 12 10 15 15 C 1.45917 * 119.37690 * 239.98296 * 9 6 4 16 16 C 1.53502 * 113.75760 * 295.66757 * 15 9 6 17 17 N 1.48040 * 86.04730 * 91.14790 * 16 15 9 18 18 C 1.46896 * 111.00259 * 137.29485 * 17 16 15 19 19 C 1.53006 * 109.47294 * 90.55840 * 18 17 16 20 20 C 1.50693 * 109.47137 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00222 * 0.02562 * 20 19 18 22 22 C 1.37883 * 120.00090 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99506 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00402 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47312 * 59.99625 * 24 22 20 26 26 H 1.48493 * 109.47366 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47142 * 300.00102 * 24 22 20 28 28 C 1.48040 * 90.83205 * 24.37030 * 17 16 15 29 29 H 1.09001 * 109.47011 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46714 * 299.99325 * 1 2 3 31 31 H 1.08997 * 109.47418 * 59.99490 * 1 2 3 32 32 H 1.09003 * 109.47191 * 240.00631 * 2 1 3 33 33 H 1.08989 * 109.47607 * 120.00220 * 2 1 3 34 34 H 1.09003 * 109.47334 * 179.97438 * 8 6 4 35 35 H 1.08998 * 109.47187 * 299.99846 * 8 6 4 36 36 H 1.09004 * 109.46942 * 59.99838 * 8 6 4 37 37 H 1.09001 * 109.26995 * 101.87172 * 12 10 9 38 38 H 1.08999 * 109.26775 * 221.34526 * 12 10 9 39 39 H 1.09002 * 109.70782 * 54.06697 * 14 13 12 40 40 H 1.09006 * 109.70871 * 174.67813 * 14 13 12 41 41 H 1.09003 * 113.78026 * 205.43083 * 16 15 9 42 42 H 1.09002 * 113.78156 * 336.86121 * 16 15 9 43 43 H 1.08997 * 109.47376 * 210.55648 * 18 17 16 44 44 H 1.09000 * 109.47088 * 330.56119 * 18 17 16 45 45 H 1.09005 * 109.47035 * 300.00064 * 19 18 17 46 46 H 1.09002 * 109.47140 * 59.99411 * 19 18 17 47 47 H 0.97002 * 119.99621 * 179.97438 * 23 22 20 48 48 H 1.09005 * 113.77899 * 221.34575 * 28 17 16 49 49 H 1.08996 * 113.88320 * 89.92490 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9375 -0.0012 7 1 3.5850 3.4699 0.8889 8 6 3.4487 3.6841 -1.2504 9 7 5.3837 2.8609 -0.0010 10 6 6.0109 2.2418 -1.0140 11 8 5.3509 1.7952 -1.9283 12 6 7.5056 2.0903 -1.0532 13 8 8.1257 3.0180 -0.1619 14 6 7.5816 2.9822 1.1642 15 6 6.1317 3.4592 1.0997 16 6 5.9844 4.9844 1.1906 17 7 4.8419 4.7175 2.0935 18 6 4.8598 5.6257 3.2479 19 6 4.0528 6.8836 2.9198 20 6 4.0707 7.8150 4.1043 21 1 4.6046 7.5378 5.0013 22 6 3.4063 9.0216 4.0426 23 7 2.7574 9.3598 2.9498 24 14 3.4290 10.1765 5.5106 25 1 4.8311 10.5545 5.8215 26 1 2.6467 11.3977 5.1918 27 1 2.8278 9.4956 6.6854 28 6 5.4045 3.3953 2.4498 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8898 34 1 3.8649 4.6916 -1.2506 35 1 3.7843 3.1518 -2.1403 36 1 2.3601 3.7412 -1.2500 37 1 7.7721 1.0753 -0.7586 38 1 7.8593 2.2745 -2.0676 39 1 7.6165 1.9628 1.5484 40 1 8.1566 3.6408 1.8153 41 1 6.8243 5.4788 1.6788 42 1 5.7003 5.4554 0.2496 43 1 4.4189 5.1259 4.1103 44 1 5.8889 5.9035 3.4757 45 1 4.4938 7.3835 2.0573 46 1 3.0237 6.6059 2.6918 47 1 2.2897 10.2085 2.9065 48 1 4.6591 2.6023 2.5103 49 1 6.0729 3.4176 3.3105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274039210.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:45 Heat of formation + Delta-G solvation = -133.103806 kcal Electronic energy + Delta-G solvation = -31919.977768 eV Core-core repulsion = 27655.410601 eV Total energy + Delta-G solvation = -4264.567167 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.91102 -41.37697 -40.27070 -38.66746 -37.69531 -36.39531 -35.31002 -33.44586 -32.64575 -31.84947 -30.44275 -28.27881 -27.46557 -27.16498 -25.98951 -24.82707 -23.88684 -22.61896 -22.15056 -21.67631 -19.70196 -19.12140 -18.52586 -18.39247 -18.11941 -17.64640 -17.23333 -16.81056 -16.54715 -16.45709 -16.22151 -15.86250 -15.75354 -15.30954 -15.07103 -14.88968 -14.61048 -14.47977 -14.15007 -13.79994 -13.68208 -13.64504 -13.42327 -13.36133 -13.23591 -12.98350 -12.93368 -12.79178 -12.64322 -12.54576 -12.47144 -12.26339 -12.02606 -11.68081 -11.64576 -11.58684 -11.37875 -11.32026 -11.19769 -10.51351 -10.39636 -10.02149 -9.68373 -8.16461 -6.27686 1.03847 1.14052 1.42870 1.43841 1.45088 1.52910 1.89242 2.42465 2.58753 2.88011 3.14839 3.17525 3.34947 3.47323 3.59571 3.83880 3.93302 3.97113 4.03245 4.10961 4.16740 4.23396 4.27146 4.33191 4.38731 4.46308 4.48473 4.54534 4.61558 4.67514 4.71049 4.74233 4.77275 4.86315 4.87726 5.05704 5.10140 5.12118 5.21901 5.35279 5.37652 5.50527 5.69397 5.78042 5.83923 6.08804 6.22754 6.31178 6.59964 6.90120 6.90809 7.41861 8.95085 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010787 B = 0.003428 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.093671 B = 8165.588654 C = 9903.997311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.055 3.945 3 O -0.361 6.361 4 C 0.461 3.539 5 O -0.523 6.523 6 C 0.148 3.852 7 H 0.151 0.849 8 C -0.151 4.151 9 N -0.565 5.565 10 C 0.491 3.509 11 O -0.562 6.562 12 C 0.057 3.943 13 O -0.369 6.369 14 C 0.065 3.935 15 C 0.110 3.890 16 C 0.009 3.991 17 N -0.499 5.499 18 C 0.048 3.952 19 C 0.041 3.959 20 C -0.543 4.543 21 H 0.063 0.937 22 C 0.002 3.998 23 N -0.932 5.932 24 Si 0.962 3.038 25 H -0.266 1.266 26 H -0.287 1.287 27 H -0.267 1.267 28 C 0.004 3.996 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.145 0.855 39 H 0.087 0.913 40 H 0.146 0.854 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.049 0.951 45 H -0.012 1.012 46 H -0.012 1.012 47 H 0.262 0.738 48 H 0.083 0.917 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.581 -18.713 -4.441 20.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.018 4.018 3 O -0.277 6.277 4 C 0.304 3.696 5 O -0.411 6.411 6 C 0.043 3.957 7 H 0.168 0.832 8 C -0.209 4.209 9 N -0.297 5.297 10 C 0.281 3.719 11 O -0.441 6.441 12 C -0.022 4.022 13 O -0.287 6.287 14 C -0.012 4.012 15 C 0.023 3.977 16 C -0.121 4.121 17 N -0.222 5.222 18 C -0.080 4.080 19 C 0.003 3.997 20 C -0.581 4.581 21 H 0.082 0.918 22 C -0.196 4.196 23 N -0.572 5.572 24 Si 0.787 3.213 25 H -0.190 1.190 26 H -0.213 1.213 27 H -0.192 1.192 28 C -0.125 4.125 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.163 0.837 39 H 0.105 0.895 40 H 0.163 0.837 41 H 0.119 0.881 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.006 0.994 46 H 0.007 0.993 47 H 0.071 0.929 48 H 0.102 0.898 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.805 -18.956 -5.287 20.517 hybrid contribution -0.042 0.633 0.888 1.091 sum 5.763 -18.322 -4.399 19.705 Atomic orbital electron populations 1.21830 0.90223 1.04495 1.03721 1.23286 0.97203 0.79016 1.02294 1.86517 1.23544 1.34011 1.83677 1.24180 0.81083 0.92946 0.71424 1.90581 1.60900 1.43549 1.46074 1.20772 0.80763 0.89393 1.04788 0.83165 1.22016 1.02747 1.00179 0.95945 1.47155 1.04570 1.55413 1.22579 1.21802 0.93076 0.76100 0.80912 1.90662 1.67507 1.48950 1.37006 1.22834 0.85077 0.96232 0.98072 1.88177 1.59292 1.60285 1.20935 1.23243 0.88944 1.04037 0.84960 1.22547 0.93762 0.94083 0.87302 1.24438 0.93960 0.94878 0.98787 1.68452 1.37382 1.02839 1.13517 1.22509 0.99256 0.93789 0.92397 1.18783 0.94130 0.91794 0.94983 1.21636 1.32256 1.03132 1.01088 0.91846 1.25934 0.94932 0.99978 0.98773 1.70112 1.34563 1.23336 1.29197 0.85550 0.78557 0.77834 0.79388 1.19042 1.21282 1.19208 1.24351 0.98395 0.93618 0.96142 0.87783 0.91289 0.91421 0.91823 0.91163 0.91035 0.91511 0.89829 0.87316 0.83734 0.89524 0.83655 0.88126 0.90714 0.91711 0.93287 0.99396 0.99345 0.92939 0.89834 0.86688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 10.29 71.98 0.74 -1.51 16 2 C 0.06 1.22 6.19 71.98 0.45 1.66 16 3 O -0.36 -10.24 10.12 -51.41 -0.52 -10.76 16 4 C 0.46 14.34 6.60 71.23 0.47 14.81 16 5 O -0.52 -17.94 14.37 28.38 0.41 -17.53 16 6 C 0.15 4.36 2.34 44.24 0.10 4.47 16 7 H 0.15 4.63 5.23 -2.38 -0.01 4.62 16 8 C -0.15 -4.42 9.04 71.98 0.65 -3.77 16 9 N -0.57 -15.17 2.42 -765.94 -1.86 -17.02 16 10 C 0.49 13.57 6.32 87.61 0.55 14.13 16 11 O -0.56 -19.21 13.33 16.04 0.21 -18.99 16 12 C 0.06 1.10 6.94 71.11 0.49 1.59 16 13 O -0.37 -6.99 10.84 -148.98 -1.61 -8.60 16 14 C 0.07 1.03 6.09 71.90 0.44 1.47 16 15 C 0.11 2.44 1.56 5.16 0.01 2.45 16 16 C 0.01 0.24 7.15 86.25 0.62 0.86 16 17 N -0.50 -15.26 4.37 -914.31 -3.99 -19.26 16 18 C 0.05 1.77 4.74 86.31 0.41 2.17 16 19 C 0.04 2.05 5.28 29.85 0.16 2.21 16 20 C -0.54 -29.57 9.11 25.60 0.23 -29.34 16 21 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 22 C 0.00 0.10 5.46 84.66 0.46 0.57 16 23 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 24 Si 0.96 43.08 29.54 68.60 2.03 45.10 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 28 C 0.00 0.09 6.53 86.24 0.56 0.66 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 33 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.07 2.12 6.00 -2.39 -0.01 2.10 16 36 H 0.08 2.28 8.11 -2.38 -0.02 2.26 16 37 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.15 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.09 1.11 8.13 -2.39 -0.02 1.09 16 40 H 0.15 1.60 7.86 -2.38 -0.02 1.58 16 41 H 0.10 2.39 7.23 -2.39 -0.02 2.37 16 42 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.06 2.32 8.08 -2.39 -0.02 2.30 16 44 H 0.05 1.65 7.38 -2.39 -0.02 1.63 16 45 H -0.01 -0.69 8.14 -2.38 -0.02 -0.70 16 46 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 47 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 48 H 0.08 1.99 7.47 -2.38 -0.02 1.97 16 49 H 0.12 1.96 7.87 -2.39 -0.02 1.94 16 Total: -1.00 -73.92 392.19 2.23 -71.69 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.94 Total: 18.80 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 6.35 Total: 12.41 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -5.57 Total: -92.11 kcal Atomic # 8 Polarization: -54.38 SS G_CDS: -1.51 Total: -55.89 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -73.92 2.23 -71.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039210.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.414 kcal (2) G-P(sol) polarization free energy of solvation -73.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds