Wall clock time and date at job start Sat Apr 11 2020 06:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34233 * 116.99680 * 2 1 4 4 O 1.20828 * 119.99975 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99762 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.47241 * 305.00421 * 5 3 2 7 7 O 1.42894 * 109.46854 * 184.99920 * 5 3 2 8 8 C 1.53005 * 109.46662 * 65.00276 * 5 3 2 9 9 N 1.46902 * 109.46695 * 184.99681 * 8 5 3 10 10 C 1.47661 * 111.00131 * 69.43601 * 9 8 5 11 11 C 1.54519 * 107.05277 * 123.12034 * 10 9 8 12 12 C 1.54879 * 102.59858 * 22.99740 * 11 10 9 13 13 H 1.08997 * 110.41617 * 80.15762 * 12 11 10 14 14 C 1.48274 * 110.99891 * 190.00220 * 9 8 5 15 15 H 1.09000 * 111.35742 * 91.91802 * 14 9 8 16 16 C 1.53126 * 108.11114 * 329.41210 * 14 9 8 17 17 C 1.52886 * 109.33272 * 182.70202 * 16 14 9 18 18 C 1.50346 * 109.30711 * 52.84956 * 17 16 14 19 19 O 1.21282 * 118.80171 * 158.06113 * 18 17 16 20 20 N 1.33346 * 122.40198 * 338.34517 * 18 17 16 21 21 C 1.46494 * 117.29221 * 179.75791 * 20 18 17 22 22 C 1.53004 * 109.47377 * 89.99580 * 21 20 18 23 23 C 1.50696 * 109.47343 * 179.97438 * 22 21 20 24 24 H 1.08002 * 120.00043 * 0.02562 * 23 22 21 25 25 C 1.37881 * 120.00259 * 179.97438 * 23 22 21 26 26 N 1.31514 * 120.00244 * 179.97438 * 25 23 22 27 27 Si 1.86804 * 119.99685 * 0.02562 * 25 23 22 28 28 H 1.48495 * 109.47259 * 89.99942 * 27 25 23 29 29 H 1.48504 * 109.46888 * 209.99910 * 27 25 23 30 30 H 1.48500 * 109.47106 * 329.99710 * 27 25 23 31 31 H 1.09001 * 109.46605 * 60.00046 * 1 2 3 32 32 H 1.08997 * 109.46772 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47192 * 299.99869 * 1 2 3 34 34 H 0.96701 * 114.00778 * 300.00167 * 7 5 3 35 35 H 1.09005 * 109.46749 * 65.00073 * 8 5 3 36 36 H 1.08998 * 109.47004 * 304.99606 * 8 5 3 37 37 H 1.08999 * 109.91550 * 242.47278 * 10 9 8 38 38 H 1.08998 * 109.91306 * 3.57182 * 10 9 8 39 39 H 1.08998 * 110.78218 * 141.27273 * 11 10 9 40 40 H 1.09001 * 110.78620 * 264.52571 * 11 10 9 41 41 H 1.09004 * 109.49729 * 62.74755 * 16 14 9 42 42 H 1.08995 * 109.49762 * 302.66158 * 16 14 9 43 43 H 1.08999 * 109.50066 * 292.90393 * 17 16 14 44 44 H 1.08999 * 109.53044 * 172.81737 * 17 16 14 45 45 H 1.09002 * 109.47082 * 209.99454 * 21 20 18 46 46 H 1.08995 * 109.47485 * 329.99613 * 21 20 18 47 47 H 1.08995 * 109.47040 * 300.00303 * 22 21 20 48 48 H 1.09003 * 109.46613 * 59.99834 * 22 21 20 49 49 H 0.96998 * 119.99516 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2750 0.0006 6 1 3.9597 0.7055 0.8426 7 8 3.9717 2.6402 0.1179 8 6 4.1080 0.6926 -1.3065 9 7 5.5758 0.6593 -1.2566 10 6 6.0495 -0.3461 -0.2844 11 6 6.9703 -1.3205 -1.0526 12 6 7.4246 -0.4709 -2.2653 13 1 8.2314 0.2027 -1.9767 14 6 6.1453 0.3287 -2.5850 15 1 6.3594 1.2293 -3.1605 16 6 5.1499 -0.5749 -3.3182 17 6 5.7398 -0.9884 -4.6667 18 6 7.1065 -1.5770 -4.4519 19 8 7.5652 -2.3136 -5.2992 20 7 7.8304 -1.3231 -3.3612 21 6 9.1459 -1.9605 -3.2648 22 6 10.2019 -1.0482 -3.8923 23 6 11.5552 -1.7036 -3.7926 24 1 11.6524 -2.6740 -3.3285 25 6 12.6693 -1.0650 -4.2948 26 7 13.8504 -1.6368 -4.2073 27 14 12.5010 0.6131 -5.0982 28 1 12.6633 1.6725 -4.0704 29 1 13.5473 0.7700 -6.1403 30 1 11.1588 0.7306 -5.7226 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 3.6565 3.2072 -0.5993 35 1 3.7869 1.3148 -2.1420 36 1 3.7259 -0.3195 -1.4392 37 1 6.6092 0.1432 0.5128 38 1 5.2005 -0.8856 0.1352 39 1 7.8249 -1.6088 -0.4405 40 1 6.4159 -2.2004 -1.3790 41 1 4.2177 -0.0334 -3.4797 42 1 4.9553 -1.4638 -2.7183 43 1 5.8177 -0.1143 -5.3132 44 1 5.0934 -1.7307 -5.1349 45 1 9.3906 -2.1320 -2.2166 46 1 9.1279 -2.9130 -3.7943 47 1 9.9573 -0.8766 -4.9405 48 1 10.2200 -0.0956 -3.3628 49 1 14.6340 -1.1875 -4.5610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274603956.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:02 Heat of formation + Delta-G solvation = -151.746781 kcal Electronic energy + Delta-G solvation = -31115.423419 eV Core-core repulsion = 26850.047831 eV Total energy + Delta-G solvation = -4265.375587 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.43001 -40.91690 -38.90958 -37.65863 -36.54020 -35.38577 -33.83373 -32.94765 -32.00017 -30.18119 -29.33314 -28.38737 -27.42021 -25.41468 -24.48005 -23.71552 -21.94799 -21.62897 -21.08789 -20.13564 -18.65984 -18.24939 -17.78013 -17.21752 -17.03817 -16.63685 -16.44359 -16.09955 -15.72057 -15.52442 -15.01586 -14.70051 -14.36797 -14.27504 -13.91289 -13.77128 -13.55539 -13.45326 -13.18862 -12.91991 -12.76864 -12.66132 -12.64762 -12.28332 -12.11217 -11.98808 -11.66795 -11.50690 -11.48787 -11.36185 -11.35004 -11.04468 -10.95954 -10.86529 -10.48044 -10.36651 -10.01186 -9.81912 -9.38455 -9.15214 -8.68510 -8.53009 -8.24252 -6.03981 -4.02310 1.55433 2.07658 2.92964 3.12381 3.31647 3.39612 3.45165 3.52398 3.91036 4.05308 4.16906 4.30899 4.42630 4.43396 4.46637 4.58408 4.59424 4.60922 4.67772 4.85247 4.93173 5.00733 5.02667 5.04065 5.15927 5.16894 5.28315 5.30907 5.48316 5.54271 5.62752 5.66603 5.76397 5.77520 5.94552 6.00711 6.07394 6.37022 6.45311 6.52719 6.65959 6.70159 6.96345 7.21465 7.24215 7.38421 7.76823 7.88717 8.48874 8.53615 8.99425 9.58254 11.09216 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019824 B = 0.002590 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.067156 B =10807.472519 C =11283.602839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.431 3.569 4 O -0.498 6.498 5 C 0.127 3.873 6 H 0.138 0.862 7 O -0.516 6.516 8 C 0.022 3.978 9 N -0.508 5.508 10 C 0.038 3.962 11 C -0.155 4.155 12 C 0.144 3.856 13 H 0.103 0.897 14 C 0.067 3.933 15 H 0.108 0.892 16 C -0.149 4.149 17 C -0.133 4.133 18 C 0.510 3.490 19 O -0.543 6.543 20 N -0.592 5.592 21 C 0.118 3.882 22 C -0.021 4.021 23 C -0.518 4.518 24 H 0.073 0.927 25 C 0.069 3.931 26 N -0.902 5.902 27 Si 0.880 3.120 28 H -0.277 1.277 29 H -0.287 1.287 30 H -0.266 1.266 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.384 0.616 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.069 0.931 46 H 0.082 0.918 47 H 0.021 0.979 48 H 0.010 0.990 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.117 4.871 9.609 30.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.273 3.727 4 O -0.385 6.385 5 C 0.065 3.935 6 H 0.155 0.845 7 O -0.321 6.321 8 C -0.107 4.107 9 N -0.232 5.232 10 C -0.090 4.090 11 C -0.195 4.195 12 C 0.038 3.962 13 H 0.121 0.879 14 C -0.041 4.041 15 H 0.125 0.875 16 C -0.188 4.188 17 C -0.174 4.174 18 C 0.297 3.703 19 O -0.421 6.421 20 N -0.323 5.323 21 C -0.003 4.003 22 C -0.059 4.059 23 C -0.556 4.556 24 H 0.091 0.909 25 C -0.133 4.133 26 N -0.541 5.541 27 Si 0.707 3.293 28 H -0.203 1.203 29 H -0.213 1.213 30 H -0.191 1.191 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.233 0.767 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.087 0.913 46 H 0.100 0.900 47 H 0.039 0.961 48 H 0.028 0.972 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -27.502 5.098 9.821 29.645 hybrid contribution -0.796 0.392 -1.082 1.399 sum -28.299 5.490 8.739 30.122 Atomic orbital electron populations 1.23323 0.75972 1.04015 1.02692 1.86533 1.23801 1.33250 1.83722 1.25020 0.93330 0.81824 0.72569 1.90701 1.66830 1.36396 1.44565 1.21554 0.84289 0.86467 1.01193 0.84514 1.86708 1.75585 1.17028 1.52731 1.22925 0.90000 1.01357 0.96374 1.63791 1.05925 1.47464 1.05985 1.23005 0.98426 0.91864 0.95716 1.23272 1.00389 0.98393 0.97430 1.21539 0.96610 0.91662 0.86430 0.87913 1.22909 0.93438 0.97935 0.89821 0.87451 1.22314 0.99325 1.00472 0.96644 1.21601 0.94497 1.02946 0.98332 1.19995 0.86999 0.81672 0.81607 1.90755 1.71885 1.37432 1.42010 1.47119 1.19462 1.47028 1.18657 1.21727 0.79694 0.97854 1.01073 1.19824 0.94582 0.95119 0.96367 1.20958 0.89658 1.05887 1.39137 0.90894 1.24979 0.95177 0.97724 0.95375 1.69907 0.98727 1.38723 1.46704 0.86774 0.78159 0.84732 0.79623 1.20275 1.21344 1.19094 0.91748 0.87802 0.91741 0.76691 0.89450 0.91658 0.89342 0.92216 0.89542 0.90864 0.90416 0.90947 0.88444 0.88378 0.91304 0.90004 0.96097 0.97167 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.56 101.05 1.07 1.23 16 2 O -0.36 -2.53 10.53 -39.27 -0.41 -2.94 16 3 C 0.43 3.50 7.27 36.01 0.26 3.76 16 4 O -0.50 -5.40 16.07 -25.47 -0.41 -5.81 16 5 C 0.13 0.88 3.49 -27.88 -0.10 0.78 16 6 H 0.14 0.85 7.01 -51.93 -0.36 0.48 16 7 O -0.52 -4.36 12.94 -55.14 -0.71 -5.07 16 8 C 0.02 0.14 2.95 -3.82 -0.01 0.13 16 9 N -0.51 -4.15 5.11 -223.08 -1.14 -5.29 16 10 C 0.04 0.30 6.10 -2.61 -0.02 0.28 16 11 C -0.16 -1.53 5.80 -24.94 -0.14 -1.68 16 12 C 0.14 1.76 3.16 -67.30 -0.21 1.55 16 13 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 14 C 0.07 0.64 3.49 -66.25 -0.23 0.41 16 15 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 16 C -0.15 -1.25 3.87 -26.72 -0.10 -1.36 16 17 C -0.13 -1.48 6.08 -28.11 -0.17 -1.65 16 18 C 0.51 8.48 7.47 -11.79 -0.09 8.39 16 19 O -0.54 -11.72 16.20 5.56 0.09 -11.63 16 20 N -0.59 -9.49 2.48 -166.16 -0.41 -9.90 16 21 C 0.12 2.35 5.02 -4.04 -0.02 2.33 16 22 C -0.02 -0.50 4.35 -27.88 -0.12 -0.62 16 23 C -0.52 -14.86 9.66 -34.44 -0.33 -15.20 16 24 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 25 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 26 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 27 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 30 H -0.27 -6.62 6.54 56.52 0.37 -6.25 16 31 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 32 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.32 8.13 -51.93 -0.42 -0.10 16 34 H 0.38 2.35 8.79 45.56 0.40 2.75 16 35 H 0.09 0.50 7.30 -51.93 -0.38 0.12 16 36 H 0.07 0.39 6.70 -51.93 -0.35 0.04 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.38 6.92 -51.93 -0.36 0.02 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.74 7.39 -51.93 -0.38 0.36 16 41 H 0.08 0.50 6.38 -51.93 -0.33 0.17 16 42 H 0.07 0.62 6.53 -51.93 -0.34 0.28 16 43 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.07 1.27 7.79 -51.93 -0.40 0.86 16 46 H 0.08 1.81 7.14 -51.93 -0.37 1.44 16 47 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 48 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 49 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 386.53 15.07 5.82 5.82 Total: -1.00 -36.51 386.53 -8.42 -44.93 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.04 Total: -0.67 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -0.32 Total: 0.29 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -0.78 Total: -42.44 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -1.45 Total: -25.46 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.51 -8.42 -44.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274603956.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.816 kcal (2) G-P(sol) polarization free energy of solvation -36.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds