Wall clock time and date at job start Sat Apr 11 2020 06:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34233 * 116.99680 * 2 1 4 4 O 1.20828 * 119.99975 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99762 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.47241 * 305.00421 * 5 3 2 7 7 O 1.42894 * 109.46854 * 184.99920 * 5 3 2 8 8 C 1.53005 * 109.46662 * 65.00276 * 5 3 2 9 9 N 1.46902 * 109.46695 * 184.99681 * 8 5 3 10 10 C 1.47661 * 111.00131 * 69.43601 * 9 8 5 11 11 C 1.54519 * 107.05277 * 123.12034 * 10 9 8 12 12 C 1.54879 * 102.59858 * 22.99740 * 11 10 9 13 13 H 1.08997 * 110.41617 * 80.15762 * 12 11 10 14 14 C 1.48274 * 110.99891 * 190.00220 * 9 8 5 15 15 H 1.09000 * 111.35742 * 91.91802 * 14 9 8 16 16 C 1.53126 * 108.11114 * 329.41210 * 14 9 8 17 17 C 1.52886 * 109.33272 * 182.70202 * 16 14 9 18 18 C 1.50346 * 109.30711 * 52.84956 * 17 16 14 19 19 O 1.21282 * 118.80171 * 158.06113 * 18 17 16 20 20 N 1.33346 * 122.40198 * 338.34517 * 18 17 16 21 21 C 1.46494 * 117.29221 * 179.75791 * 20 18 17 22 22 C 1.53004 * 109.47377 * 89.99580 * 21 20 18 23 23 C 1.50696 * 109.47343 * 179.97438 * 22 21 20 24 24 H 1.08002 * 120.00043 * 0.02562 * 23 22 21 25 25 C 1.37881 * 120.00259 * 179.97438 * 23 22 21 26 26 N 1.31514 * 120.00244 * 179.97438 * 25 23 22 27 27 Si 1.86804 * 119.99685 * 0.02562 * 25 23 22 28 28 H 1.48495 * 109.47259 * 89.99942 * 27 25 23 29 29 H 1.48504 * 109.46888 * 209.99910 * 27 25 23 30 30 H 1.48500 * 109.47106 * 329.99710 * 27 25 23 31 31 H 1.09001 * 109.46605 * 60.00046 * 1 2 3 32 32 H 1.08997 * 109.46772 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47192 * 299.99869 * 1 2 3 34 34 H 0.96701 * 114.00778 * 300.00167 * 7 5 3 35 35 H 1.09005 * 109.46749 * 65.00073 * 8 5 3 36 36 H 1.08998 * 109.47004 * 304.99606 * 8 5 3 37 37 H 1.08999 * 109.91550 * 242.47278 * 10 9 8 38 38 H 1.08998 * 109.91306 * 3.57182 * 10 9 8 39 39 H 1.08998 * 110.78218 * 141.27273 * 11 10 9 40 40 H 1.09001 * 110.78620 * 264.52571 * 11 10 9 41 41 H 1.09004 * 109.49729 * 62.74755 * 16 14 9 42 42 H 1.08995 * 109.49762 * 302.66158 * 16 14 9 43 43 H 1.08999 * 109.50066 * 292.90393 * 17 16 14 44 44 H 1.08999 * 109.53044 * 172.81737 * 17 16 14 45 45 H 1.09002 * 109.47082 * 209.99454 * 21 20 18 46 46 H 1.08995 * 109.47485 * 329.99613 * 21 20 18 47 47 H 1.08995 * 109.47040 * 300.00303 * 22 21 20 48 48 H 1.09003 * 109.46613 * 59.99834 * 22 21 20 49 49 H 0.96998 * 119.99516 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2750 0.0006 6 1 3.9597 0.7055 0.8426 7 8 3.9717 2.6402 0.1179 8 6 4.1080 0.6926 -1.3065 9 7 5.5758 0.6593 -1.2566 10 6 6.0495 -0.3461 -0.2844 11 6 6.9703 -1.3205 -1.0526 12 6 7.4246 -0.4709 -2.2653 13 1 8.2314 0.2027 -1.9767 14 6 6.1453 0.3287 -2.5850 15 1 6.3594 1.2293 -3.1605 16 6 5.1499 -0.5749 -3.3182 17 6 5.7398 -0.9884 -4.6667 18 6 7.1065 -1.5770 -4.4519 19 8 7.5652 -2.3136 -5.2992 20 7 7.8304 -1.3231 -3.3612 21 6 9.1459 -1.9605 -3.2648 22 6 10.2019 -1.0482 -3.8923 23 6 11.5552 -1.7036 -3.7926 24 1 11.6524 -2.6740 -3.3285 25 6 12.6693 -1.0650 -4.2948 26 7 13.8504 -1.6368 -4.2073 27 14 12.5010 0.6131 -5.0982 28 1 12.6633 1.6725 -4.0704 29 1 13.5473 0.7700 -6.1403 30 1 11.1588 0.7306 -5.7226 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 3.6565 3.2072 -0.5993 35 1 3.7869 1.3148 -2.1420 36 1 3.7259 -0.3195 -1.4392 37 1 6.6092 0.1432 0.5128 38 1 5.2005 -0.8856 0.1352 39 1 7.8249 -1.6088 -0.4405 40 1 6.4159 -2.2004 -1.3790 41 1 4.2177 -0.0334 -3.4797 42 1 4.9553 -1.4638 -2.7183 43 1 5.8177 -0.1143 -5.3132 44 1 5.0934 -1.7307 -5.1349 45 1 9.3906 -2.1320 -2.2166 46 1 9.1279 -2.9130 -3.7943 47 1 9.9573 -0.8766 -4.9405 48 1 10.2200 -0.0956 -3.3628 49 1 14.6340 -1.1875 -4.5610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274603956.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:01 Heat of formation + Delta-G solvation = -180.020063 kcal Electronic energy + Delta-G solvation = -31116.649440 eV Core-core repulsion = 26850.047831 eV Total energy + Delta-G solvation = -4266.601609 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.27361 -41.64693 -39.93130 -38.27785 -37.26654 -36.68928 -35.20579 -34.41299 -33.08442 -31.66706 -30.16238 -29.16397 -27.96959 -27.05058 -25.22348 -24.71463 -23.05943 -22.69613 -22.10895 -21.07724 -19.45228 -19.19923 -18.86323 -18.38146 -17.98084 -17.68964 -17.38043 -16.78938 -16.60797 -16.51082 -16.27967 -15.87239 -15.56278 -15.07152 -14.91093 -14.83744 -14.72784 -14.45929 -14.30769 -14.09654 -13.81601 -13.64582 -13.52349 -13.10941 -13.03382 -12.88229 -12.79010 -12.74636 -12.63026 -12.29586 -12.16720 -11.96409 -11.94071 -11.84551 -11.81724 -11.75699 -11.52554 -11.51070 -11.06827 -10.80038 -10.58549 -9.65223 -9.28145 -8.33186 -6.37524 0.97686 1.30386 1.34114 1.45724 1.58590 1.65272 2.02107 2.32468 2.80232 3.01722 3.30468 3.41809 3.48088 3.64689 3.72719 3.82171 3.84623 3.99654 4.09550 4.20536 4.23916 4.28975 4.32595 4.33888 4.37791 4.42352 4.56661 4.60836 4.67627 4.72722 4.77884 4.80179 4.83435 4.84583 4.89640 5.01261 5.09347 5.25960 5.27034 5.28915 5.35103 5.48186 5.65481 5.80481 5.98212 6.21257 6.46998 6.59900 6.68669 6.71378 7.21655 7.27479 8.83245 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019824 B = 0.002590 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.067156 B =10807.472519 C =11283.602839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.437 3.563 4 O -0.531 6.531 5 C 0.132 3.868 6 H 0.146 0.854 7 O -0.533 6.533 8 C 0.025 3.975 9 N -0.511 5.511 10 C 0.043 3.957 11 C -0.150 4.150 12 C 0.129 3.871 13 H 0.090 0.910 14 C 0.075 3.925 15 H 0.109 0.891 16 C -0.139 4.139 17 C -0.122 4.122 18 C 0.499 3.501 19 O -0.604 6.604 20 N -0.586 5.586 21 C 0.130 3.870 22 C -0.009 4.009 23 C -0.530 4.530 24 H 0.037 0.963 25 C 0.008 3.992 26 N -0.946 5.946 27 Si 0.950 3.050 28 H -0.257 1.257 29 H -0.282 1.282 30 H -0.261 1.261 31 H 0.064 0.936 32 H 0.130 0.870 33 H 0.060 0.940 34 H 0.392 0.608 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.111 0.889 42 H 0.076 0.924 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.082 0.918 46 H 0.052 0.948 47 H 0.000 1.000 48 H 0.024 0.976 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.052 6.651 10.169 33.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C 0.280 3.720 4 O -0.420 6.420 5 C 0.070 3.930 6 H 0.163 0.837 7 O -0.340 6.340 8 C -0.104 4.104 9 N -0.235 5.235 10 C -0.084 4.084 11 C -0.189 4.189 12 C 0.024 3.976 13 H 0.108 0.892 14 C -0.033 4.033 15 H 0.127 0.873 16 C -0.178 4.178 17 C -0.162 4.162 18 C 0.289 3.711 19 O -0.486 6.486 20 N -0.316 5.316 21 C 0.007 3.993 22 C -0.047 4.047 23 C -0.569 4.569 24 H 0.055 0.945 25 C -0.189 4.189 26 N -0.586 5.586 27 Si 0.773 3.227 28 H -0.181 1.181 29 H -0.208 1.208 30 H -0.186 1.186 31 H 0.083 0.917 32 H 0.148 0.852 33 H 0.078 0.922 34 H 0.243 0.757 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.130 0.870 42 H 0.094 0.906 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.100 0.900 46 H 0.071 0.929 47 H 0.018 0.982 48 H 0.042 0.958 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -30.476 6.891 10.425 32.938 hybrid contribution 0.127 -0.270 -1.200 1.237 sum -30.348 6.621 9.225 32.403 Atomic orbital electron populations 1.23561 0.74835 1.05742 1.02537 1.86527 1.24952 1.32593 1.83259 1.25218 0.93681 0.81591 0.71540 1.90693 1.67593 1.37466 1.46240 1.21594 0.83488 0.85986 1.01883 0.83682 1.86679 1.75825 1.17942 1.53559 1.22966 0.88605 1.02321 0.96489 1.63780 1.07180 1.47457 1.05071 1.22996 0.98744 0.91403 0.95301 1.23206 1.00671 0.98604 0.96418 1.21810 0.97877 0.91845 0.86049 0.89248 1.22809 0.92110 0.97650 0.90759 0.87267 1.22318 0.99997 1.00742 0.94711 1.21610 0.90777 1.03392 1.00441 1.21124 0.88805 0.80718 0.80451 1.90727 1.73635 1.40209 1.44000 1.47104 1.17640 1.46996 1.19827 1.21249 0.81217 0.95986 1.00833 1.19653 0.93492 0.96069 0.95536 1.21279 0.92108 1.04861 1.38635 0.94453 1.25941 0.94693 1.02233 0.96027 1.70049 0.99712 1.40818 1.48030 0.85669 0.78293 0.79707 0.79017 1.18104 1.20776 1.18562 0.91736 0.85176 0.92153 0.75741 0.88190 0.90302 0.89352 0.89946 0.90216 0.90795 0.87039 0.90553 0.86928 0.87129 0.89996 0.92921 0.98179 0.95770 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 113.37 1.20 1.39 16 2 O -0.36 -4.01 10.53 -51.44 -0.54 -4.55 16 3 C 0.44 5.97 7.27 71.24 0.52 6.48 16 4 O -0.53 -10.60 16.07 28.38 0.46 -10.15 16 5 C 0.13 1.41 3.49 29.85 0.10 1.51 16 6 H 0.15 1.29 7.01 -2.39 -0.02 1.28 16 7 O -0.53 -7.72 12.94 -129.95 -1.68 -9.40 16 8 C 0.02 0.21 2.95 86.30 0.25 0.46 16 9 N -0.51 -6.52 5.11 -859.69 -4.39 -10.91 16 10 C 0.04 0.54 6.10 86.67 0.53 1.07 16 11 C -0.15 -2.67 5.80 31.75 0.18 -2.48 16 12 C 0.13 2.95 3.16 46.39 0.15 3.10 16 13 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 14 C 0.08 1.19 3.49 45.10 0.16 1.34 16 15 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 16 C -0.14 -1.77 3.87 30.60 0.12 -1.65 16 17 C -0.12 -2.37 6.08 29.70 0.18 -2.19 16 18 C 0.50 16.35 7.47 87.77 0.66 17.01 16 19 O -0.60 -26.77 16.20 -3.03 -0.05 -26.82 16 20 N -0.59 -18.60 2.48 -798.81 -1.98 -20.58 16 21 C 0.13 5.36 5.02 86.38 0.43 5.80 16 22 C -0.01 -0.45 4.35 29.85 0.13 -0.32 16 23 C -0.53 -31.58 9.66 25.60 0.25 -31.34 16 24 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 25 C 0.01 0.51 5.47 84.66 0.46 0.97 16 26 N -0.95 -60.34 13.96 21.45 0.30 -60.04 16 27 Si 0.95 46.02 27.47 68.60 1.88 47.90 16 28 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 29 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 30 H -0.26 -12.36 6.54 99.48 0.65 -11.70 16 31 H 0.06 0.48 8.13 -2.39 -0.02 0.46 16 32 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.06 0.50 8.13 -2.39 -0.02 0.48 16 34 H 0.39 3.94 8.79 -74.06 -0.65 3.29 16 35 H 0.10 0.66 7.30 -2.38 -0.02 0.64 16 36 H 0.08 0.52 6.70 -2.39 -0.02 0.51 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 0.70 6.92 -2.39 -0.02 0.68 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.33 7.39 -2.39 -0.02 1.31 16 41 H 0.11 0.79 6.38 -2.38 -0.02 0.77 16 42 H 0.08 0.97 6.53 -2.39 -0.02 0.96 16 43 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.08 3.10 7.79 -2.39 -0.02 3.08 16 46 H 0.05 2.47 7.14 -2.39 -0.02 2.45 16 47 H 0.00 -0.01 7.20 -2.39 -0.02 -0.03 16 48 H 0.02 1.12 7.57 -2.39 -0.02 1.10 16 49 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -83.03 386.53 -0.42 -83.45 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.26 Total: 9.95 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 5.32 Total: 1.15 kcal Atomic # 7 Polarization: -85.46 SS G_CDS: -6.07 Total: -91.53 kcal Atomic # 8 Polarization: -49.10 SS G_CDS: -1.82 Total: -50.92 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.88 Total: 47.90 kcal Total: -83.03 -0.42 -83.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274603956.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.567 kcal (2) G-P(sol) polarization free energy of solvation -83.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds