Wall clock time and date at job start Sat Apr 11 2020 06:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34231 * 117.00020 * 2 1 4 4 O 1.20823 * 119.99890 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99789 * 179.97438 * 3 2 1 6 6 H 1.09010 * 109.46845 * 55.00861 * 5 3 2 7 7 O 1.42905 * 109.46709 * 175.00297 * 5 3 2 8 8 C 1.52991 * 109.47419 * 295.00699 * 5 3 2 9 9 N 1.46905 * 109.47226 * 172.99820 * 8 5 3 10 10 C 1.48080 * 110.99818 * 55.82902 * 9 8 5 11 11 C 1.54975 * 104.81899 * 146.01701 * 10 9 8 12 12 C 1.55311 * 101.74056 * 323.34394 * 11 10 9 13 13 C 1.46653 * 111.00218 * 176.25310 * 9 8 5 14 14 C 1.53892 * 110.90556 * 357.85857 * 13 9 8 15 15 C 1.54646 * 101.58849 * 144.73991 * 14 13 9 16 16 N 1.46848 * 105.50407 * 335.23292 * 15 14 13 17 17 C 1.46497 * 124.36622 * 196.87671 * 16 15 14 18 18 C 1.53003 * 109.47362 * 90.02037 * 17 16 15 19 19 C 1.50700 * 109.47148 * 179.97438 * 18 17 16 20 20 H 1.08007 * 120.00240 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00135 * 179.72535 * 19 18 17 22 22 N 1.31513 * 119.99726 * 0.27614 * 21 19 18 23 23 Si 1.86793 * 120.00137 * 180.27912 * 21 19 18 24 24 H 1.48498 * 109.47649 * 89.99873 * 23 21 19 25 25 H 1.48504 * 109.47170 * 210.00047 * 23 21 19 26 26 H 1.48497 * 109.47025 * 329.99642 * 23 21 19 27 27 C 1.34649 * 111.26657 * 17.13288 * 16 15 14 28 28 O 1.21278 * 125.07805 * 178.89002 * 27 16 15 29 29 H 1.09000 * 109.46711 * 299.99488 * 1 2 3 30 30 H 1.08996 * 109.47150 * 59.99248 * 1 2 3 31 31 H 1.08999 * 109.46680 * 179.97438 * 1 2 3 32 32 H 0.96697 * 113.99739 * 60.00581 * 7 5 3 33 33 H 1.09001 * 109.47338 * 52.99993 * 8 5 3 34 34 H 1.09000 * 109.46985 * 292.99551 * 8 5 3 35 35 H 1.08999 * 110.36668 * 264.85113 * 10 9 8 36 36 H 1.08999 * 110.36440 * 27.18011 * 10 9 8 37 37 H 1.08995 * 110.97689 * 81.45950 * 11 10 9 38 38 H 1.09006 * 110.97168 * 205.19583 * 11 10 9 39 39 H 1.09011 * 110.74752 * 276.71183 * 12 11 10 40 40 H 1.09003 * 110.74927 * 153.36651 * 12 11 10 41 41 H 1.09003 * 110.99899 * 26.66607 * 14 13 9 42 42 H 1.08998 * 111.03776 * 262.83288 * 14 13 9 43 43 H 1.09000 * 110.24067 * 216.21951 * 15 14 13 44 44 H 1.09001 * 110.30973 * 94.27740 * 15 14 13 45 45 H 1.09008 * 109.47321 * 330.02145 * 17 16 15 46 46 H 1.08997 * 109.47146 * 210.02166 * 17 16 15 47 47 H 1.08992 * 109.47011 * 60.00156 * 18 17 16 48 48 H 1.08997 * 109.47095 * 300.00160 * 18 17 16 49 49 H 0.96996 * 120.00259 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9604 0.7051 -0.8411 7 8 3.9718 2.6401 -0.1169 8 6 4.1071 0.6928 1.3081 9 7 5.5725 0.6149 1.2404 10 6 6.1609 1.9395 0.9370 11 6 7.5030 1.9638 1.7115 12 6 7.1321 1.1982 3.0108 13 6 6.1331 0.1439 2.5111 14 6 5.0223 -0.0772 3.5529 15 6 5.5582 -1.3070 4.3222 16 7 6.4498 -1.9995 3.3831 17 6 6.9024 -3.3839 3.5405 18 6 5.9156 -4.3252 2.8469 19 6 6.3816 -5.7492 3.0084 20 1 7.2905 -5.9617 3.5518 21 6 5.6444 -6.7814 2.4677 22 7 4.5375 -6.5227 1.8065 23 14 6.2179 -8.5470 2.6746 24 1 5.6367 -9.1139 3.9180 25 1 5.7730 -9.3518 1.5085 26 1 7.7000 -8.5791 2.7615 27 6 6.8021 -1.1962 2.3615 28 8 7.5451 -1.5069 1.4548 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.6562 3.2071 0.5999 33 1 3.6968 -0.3057 1.4585 34 1 3.8154 1.3346 2.1395 35 1 6.3388 2.0393 -0.1337 36 1 5.5050 2.7356 1.2894 37 1 8.2822 1.4393 1.1585 38 1 7.8066 2.9869 1.9339 39 1 6.6602 1.8663 3.7314 40 1 8.0121 0.7219 3.4430 41 1 4.0720 -0.3029 3.0688 42 1 4.9272 0.7853 4.2126 43 1 4.7343 -1.9596 4.6110 44 1 6.1136 -0.9888 5.2045 45 1 6.9555 -3.6305 4.6010 46 1 7.8891 -3.4969 3.0915 47 1 5.8626 -4.0788 1.7866 48 1 4.9289 -4.2123 3.2960 49 1 4.0186 -7.2488 1.4264 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274604549.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:32 Heat of formation + Delta-G solvation = -142.259922 kcal Electronic energy + Delta-G solvation = -31549.939775 eV Core-core repulsion = 27284.975569 eV Total energy + Delta-G solvation = -4264.964206 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.38292 -40.70122 -38.43854 -37.18889 -36.23502 -35.84282 -33.57271 -32.86809 -31.81265 -29.65308 -29.07973 -27.73181 -27.40309 -25.19973 -24.14658 -23.57576 -21.76455 -21.72042 -21.05396 -20.00570 -18.81931 -18.29458 -17.60785 -16.81136 -16.68588 -16.30386 -15.98552 -15.76958 -15.51000 -15.38136 -15.10741 -14.44615 -14.24295 -14.07888 -13.78259 -13.52936 -13.33427 -13.16004 -13.01234 -12.66459 -12.59542 -12.49651 -12.27069 -12.20731 -12.11149 -11.73355 -11.60730 -11.25119 -11.13288 -11.10605 -11.06375 -10.97866 -10.92979 -10.71699 -10.57864 -10.17950 -9.95936 -9.84454 -9.45364 -9.15913 -8.35929 -8.28391 -7.97247 -6.00584 -4.03916 1.78414 2.33386 2.97201 3.32060 3.38520 3.42040 3.49600 3.72181 3.93698 4.23255 4.35396 4.46545 4.47369 4.47919 4.63223 4.75098 4.82789 4.88428 4.95379 4.98436 5.04583 5.14588 5.31772 5.34255 5.35600 5.36366 5.46396 5.53341 5.63024 5.69634 5.73331 5.81466 5.92432 6.00828 6.04741 6.08648 6.16611 6.48961 6.73826 6.82300 6.84475 6.99684 7.07882 7.40477 7.54674 7.70140 7.89065 8.00084 8.36055 8.78580 9.02957 9.59984 11.10761 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010151 B = 0.003508 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.703261 B = 7980.350596 C = 9956.296903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.348 6.348 3 C 0.437 3.563 4 O -0.505 6.505 5 C 0.121 3.879 6 H 0.151 0.849 7 O -0.525 6.525 8 C 0.024 3.976 9 N -0.497 5.497 10 C 0.053 3.947 11 C -0.133 4.133 12 C -0.118 4.118 13 C 0.071 3.929 14 C -0.160 4.160 15 C 0.106 3.894 16 N -0.614 5.614 17 C 0.130 3.870 18 C 0.013 3.987 19 C -0.522 4.522 20 H 0.056 0.944 21 C 0.060 3.940 22 N -0.892 5.892 23 Si 0.894 3.106 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.273 1.273 27 C 0.534 3.466 28 O -0.513 6.513 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.380 0.620 33 H 0.106 0.894 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.022 0.978 48 H 0.016 0.984 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.480 20.797 2.917 21.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.264 6.264 3 C 0.279 3.721 4 O -0.393 6.393 5 C 0.060 3.940 6 H 0.168 0.832 7 O -0.331 6.331 8 C -0.104 4.104 9 N -0.221 5.221 10 C -0.074 4.074 11 C -0.171 4.171 12 C -0.157 4.157 13 C -0.022 4.022 14 C -0.199 4.199 15 C -0.018 4.018 16 N -0.349 5.349 17 C 0.010 3.990 18 C -0.025 4.025 19 C -0.561 4.561 20 H 0.075 0.925 21 C -0.142 4.142 22 N -0.531 5.531 23 Si 0.721 3.279 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.198 1.198 27 C 0.319 3.681 28 O -0.386 6.386 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.230 0.770 33 H 0.124 0.876 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.040 0.960 48 H 0.034 0.966 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.018 20.165 1.401 20.609 hybrid contribution -0.738 -0.375 1.278 1.523 sum -4.756 19.789 2.679 20.528 Atomic orbital electron populations 1.23339 0.75906 1.04274 1.02394 1.86595 1.23794 1.32750 1.83285 1.24783 0.93090 0.81891 0.72380 1.90675 1.66902 1.36453 1.45224 1.21595 0.85037 0.85174 1.02203 0.83191 1.86775 1.74978 1.17907 1.53433 1.23012 0.90151 1.02689 0.94542 1.63188 1.03230 1.25948 1.29685 1.23252 0.94029 0.88599 1.01540 1.22832 0.98474 1.00182 0.95636 1.22641 0.98744 0.96164 0.98109 1.21912 0.95548 0.95693 0.89088 1.23413 0.99355 0.99065 0.98034 1.21961 0.94213 0.93286 0.92321 1.48530 1.48296 1.13685 1.24367 1.21783 0.99626 0.77121 1.00501 1.19394 0.93875 0.92849 0.96403 1.21091 1.08887 0.91091 1.35034 0.92532 1.24986 0.94936 0.99212 0.95047 1.69972 1.15090 1.32142 1.35868 0.86570 0.79097 0.84620 0.77575 1.20692 1.21182 1.19784 1.19989 0.81210 0.85339 0.81591 1.90671 1.36681 1.77912 1.33380 0.91837 0.91857 0.87556 0.77049 0.87598 0.93111 0.89253 0.92743 0.90069 0.90660 0.90485 0.90396 0.88567 0.89481 0.90091 0.91653 0.91775 0.91146 0.95958 0.96572 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.36 16 2 O -0.35 -4.00 10.50 -39.26 -0.41 -4.41 16 3 C 0.44 4.94 7.27 36.01 0.26 5.20 16 4 O -0.50 -6.60 16.07 -25.46 -0.41 -7.01 16 5 C 0.12 1.23 3.50 -27.89 -0.10 1.13 16 6 H 0.15 1.62 8.14 -51.92 -0.42 1.19 16 7 O -0.53 -4.88 9.90 -55.14 -0.55 -5.43 16 8 C 0.02 0.26 3.32 -3.83 -0.01 0.24 16 9 N -0.50 -6.32 4.97 -217.42 -1.08 -7.40 16 10 C 0.05 0.55 4.96 -2.13 -0.01 0.54 16 11 C -0.13 -1.37 7.08 -24.46 -0.17 -1.54 16 12 C -0.12 -1.25 6.06 -25.20 -0.15 -1.40 16 13 C 0.07 0.94 0.99 -132.20 -0.13 0.80 16 14 C -0.16 -1.72 5.07 -25.40 -0.13 -1.85 16 15 C 0.11 1.38 7.36 -2.99 -0.02 1.36 16 16 N -0.61 -11.03 2.94 -172.49 -0.51 -11.54 16 17 C 0.13 2.74 5.88 -4.04 -0.02 2.71 16 18 C 0.01 0.33 5.30 -27.88 -0.15 0.19 16 19 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 20 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 23 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 27 C 0.53 9.95 6.86 -11.13 -0.08 9.88 16 28 O -0.51 -11.83 17.60 5.56 0.10 -11.73 16 29 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 30 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 31 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.38 2.53 8.33 45.56 0.38 2.91 16 33 H 0.11 1.27 6.80 -51.93 -0.35 0.91 16 34 H 0.05 0.43 7.03 -51.93 -0.37 0.06 16 35 H 0.09 1.01 7.89 -51.93 -0.41 0.60 16 36 H 0.05 0.45 6.06 -51.93 -0.31 0.14 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.62 7.45 -51.92 -0.39 0.24 16 40 H 0.08 0.90 7.81 -51.93 -0.41 0.50 16 41 H 0.10 1.03 4.92 -51.93 -0.26 0.78 16 42 H 0.09 0.67 7.44 -51.93 -0.39 0.28 16 43 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 46 H 0.07 1.58 7.92 -51.93 -0.41 1.16 16 47 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 392.15 15.07 5.91 5.91 Total: -1.00 -36.25 392.15 -8.39 -44.65 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.10 Total: 1.32 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -0.06 Total: 5.15 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: -0.85 Total: -45.09 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -1.27 Total: -28.59 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.25 -8.39 -44.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274604549.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.615 kcal (2) G-P(sol) polarization free energy of solvation -36.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds