Wall clock time and date at job start Sat Apr 11 2020 06:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34231 * 117.00020 * 2 1 4 4 O 1.20823 * 119.99890 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99789 * 179.97438 * 3 2 1 6 6 H 1.09010 * 109.46845 * 55.00861 * 5 3 2 7 7 O 1.42905 * 109.46709 * 175.00297 * 5 3 2 8 8 C 1.52991 * 109.47419 * 295.00699 * 5 3 2 9 9 N 1.46905 * 109.47226 * 172.99820 * 8 5 3 10 10 C 1.48080 * 110.99818 * 55.82902 * 9 8 5 11 11 C 1.54975 * 104.81899 * 146.01701 * 10 9 8 12 12 C 1.55311 * 101.74056 * 323.34394 * 11 10 9 13 13 C 1.46653 * 111.00218 * 176.25310 * 9 8 5 14 14 C 1.53892 * 110.90556 * 357.85857 * 13 9 8 15 15 C 1.54646 * 101.58849 * 144.73991 * 14 13 9 16 16 N 1.46848 * 105.50407 * 335.23292 * 15 14 13 17 17 C 1.46497 * 124.36622 * 196.87671 * 16 15 14 18 18 C 1.53003 * 109.47362 * 90.02037 * 17 16 15 19 19 C 1.50700 * 109.47148 * 179.97438 * 18 17 16 20 20 H 1.08007 * 120.00240 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00135 * 179.72535 * 19 18 17 22 22 N 1.31513 * 119.99726 * 0.27614 * 21 19 18 23 23 Si 1.86793 * 120.00137 * 180.27912 * 21 19 18 24 24 H 1.48498 * 109.47649 * 89.99873 * 23 21 19 25 25 H 1.48504 * 109.47170 * 210.00047 * 23 21 19 26 26 H 1.48497 * 109.47025 * 329.99642 * 23 21 19 27 27 C 1.34649 * 111.26657 * 17.13288 * 16 15 14 28 28 O 1.21278 * 125.07805 * 178.89002 * 27 16 15 29 29 H 1.09000 * 109.46711 * 299.99488 * 1 2 3 30 30 H 1.08996 * 109.47150 * 59.99248 * 1 2 3 31 31 H 1.08999 * 109.46680 * 179.97438 * 1 2 3 32 32 H 0.96697 * 113.99739 * 60.00581 * 7 5 3 33 33 H 1.09001 * 109.47338 * 52.99993 * 8 5 3 34 34 H 1.09000 * 109.46985 * 292.99551 * 8 5 3 35 35 H 1.08999 * 110.36668 * 264.85113 * 10 9 8 36 36 H 1.08999 * 110.36440 * 27.18011 * 10 9 8 37 37 H 1.08995 * 110.97689 * 81.45950 * 11 10 9 38 38 H 1.09006 * 110.97168 * 205.19583 * 11 10 9 39 39 H 1.09011 * 110.74752 * 276.71183 * 12 11 10 40 40 H 1.09003 * 110.74927 * 153.36651 * 12 11 10 41 41 H 1.09003 * 110.99899 * 26.66607 * 14 13 9 42 42 H 1.08998 * 111.03776 * 262.83288 * 14 13 9 43 43 H 1.09000 * 110.24067 * 216.21951 * 15 14 13 44 44 H 1.09001 * 110.30973 * 94.27740 * 15 14 13 45 45 H 1.09008 * 109.47321 * 330.02145 * 17 16 15 46 46 H 1.08997 * 109.47146 * 210.02166 * 17 16 15 47 47 H 1.08992 * 109.47011 * 60.00156 * 18 17 16 48 48 H 1.08997 * 109.47095 * 300.00160 * 18 17 16 49 49 H 0.96996 * 120.00259 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9604 0.7051 -0.8411 7 8 3.9718 2.6401 -0.1169 8 6 4.1071 0.6928 1.3081 9 7 5.5725 0.6149 1.2404 10 6 6.1609 1.9395 0.9370 11 6 7.5030 1.9638 1.7115 12 6 7.1321 1.1982 3.0108 13 6 6.1331 0.1439 2.5111 14 6 5.0223 -0.0772 3.5529 15 6 5.5582 -1.3070 4.3222 16 7 6.4498 -1.9995 3.3831 17 6 6.9024 -3.3839 3.5405 18 6 5.9156 -4.3252 2.8469 19 6 6.3816 -5.7492 3.0084 20 1 7.2905 -5.9617 3.5518 21 6 5.6444 -6.7814 2.4677 22 7 4.5375 -6.5227 1.8065 23 14 6.2179 -8.5470 2.6746 24 1 5.6367 -9.1139 3.9180 25 1 5.7730 -9.3518 1.5085 26 1 7.7000 -8.5791 2.7615 27 6 6.8021 -1.1962 2.3615 28 8 7.5451 -1.5069 1.4548 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.6562 3.2071 0.5999 33 1 3.6968 -0.3057 1.4585 34 1 3.8154 1.3346 2.1395 35 1 6.3388 2.0393 -0.1337 36 1 5.5050 2.7356 1.2894 37 1 8.2822 1.4393 1.1585 38 1 7.8066 2.9869 1.9339 39 1 6.6602 1.8663 3.7314 40 1 8.0121 0.7219 3.4430 41 1 4.0720 -0.3029 3.0688 42 1 4.9272 0.7853 4.2126 43 1 4.7343 -1.9596 4.6110 44 1 6.1136 -0.9888 5.2045 45 1 6.9555 -3.6305 4.6010 46 1 7.8891 -3.4969 3.0915 47 1 5.8626 -4.0788 1.7866 48 1 4.9289 -4.2123 3.2960 49 1 4.0186 -7.2488 1.4264 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274604549.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:32 Heat of formation + Delta-G solvation = -169.959036 kcal Electronic energy + Delta-G solvation = -31551.140899 eV Core-core repulsion = 27284.975569 eV Total energy + Delta-G solvation = -4266.165330 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.39859 -41.66606 -39.51785 -38.13424 -37.35270 -37.09778 -35.51000 -33.69840 -33.44417 -30.76112 -30.43230 -28.78234 -28.16391 -26.98987 -25.17037 -24.63065 -23.42257 -22.56765 -22.03692 -21.22059 -20.00452 -19.25540 -18.66726 -18.45843 -17.67092 -17.52891 -17.05849 -16.80589 -16.60159 -16.42738 -16.33180 -16.20939 -15.50174 -14.95912 -14.76646 -14.62497 -14.51644 -14.39202 -14.25060 -14.06876 -13.88375 -13.58148 -13.45462 -13.29128 -13.08114 -12.87915 -12.82929 -12.66946 -12.51161 -12.46270 -12.01619 -11.96977 -11.92864 -11.89666 -11.85720 -11.78885 -11.48528 -11.39173 -10.98344 -10.72772 -10.58250 -9.50732 -9.24018 -8.22325 -6.35200 0.89644 1.39177 1.41979 1.49995 1.53058 1.66982 2.17786 2.41990 2.80213 3.11039 3.16253 3.28848 3.46180 3.54458 3.65562 3.78152 3.91210 3.98278 4.04415 4.18820 4.22332 4.28756 4.32270 4.36798 4.51876 4.54565 4.59756 4.67449 4.67743 4.70465 4.79544 4.84596 4.89119 4.91238 5.00997 5.11055 5.21029 5.22621 5.32490 5.36062 5.47880 5.61841 5.81872 5.91606 6.03011 6.17862 6.36744 6.38278 6.60045 6.80169 7.33295 7.36058 8.89759 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010151 B = 0.003508 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.703261 B = 7980.350596 C = 9956.296903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.443 3.557 4 O -0.522 6.522 5 C 0.131 3.869 6 H 0.137 0.863 7 O -0.527 6.527 8 C 0.031 3.969 9 N -0.530 5.530 10 C 0.058 3.942 11 C -0.132 4.132 12 C -0.111 4.111 13 C 0.078 3.922 14 C -0.148 4.148 15 C 0.098 3.902 16 N -0.623 5.623 17 C 0.143 3.857 18 C 0.026 3.974 19 C -0.546 4.546 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.931 5.931 23 Si 0.969 3.031 24 H -0.265 1.265 25 H -0.284 1.284 26 H -0.265 1.265 27 C 0.515 3.485 28 O -0.575 6.575 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.122 0.878 32 H 0.394 0.606 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.137 0.863 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.091 0.909 46 H 0.049 0.951 47 H -0.029 1.029 48 H 0.001 0.999 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.046 22.523 5.376 23.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.286 3.714 4 O -0.412 6.412 5 C 0.070 3.930 6 H 0.154 0.846 7 O -0.335 6.335 8 C -0.097 4.097 9 N -0.255 5.255 10 C -0.068 4.068 11 C -0.170 4.170 12 C -0.150 4.150 13 C -0.015 4.015 14 C -0.186 4.186 15 C -0.025 4.025 16 N -0.355 5.355 17 C 0.022 3.978 18 C -0.012 4.012 19 C -0.584 4.584 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.571 5.571 23 Si 0.793 3.207 24 H -0.190 1.190 25 H -0.210 1.210 26 H -0.189 1.189 27 C 0.302 3.698 28 O -0.454 6.454 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.140 0.860 32 H 0.246 0.754 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.126 0.874 39 H 0.139 0.861 40 H 0.082 0.918 41 H 0.112 0.888 42 H 0.155 0.845 43 H 0.095 0.905 44 H 0.118 0.882 45 H 0.109 0.891 46 H 0.067 0.933 47 H -0.011 1.011 48 H 0.019 0.981 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.612 21.925 3.904 22.743 hybrid contribution -0.594 -0.930 0.447 1.191 sum -5.206 20.995 4.351 22.064 Atomic orbital electron populations 1.23576 0.74500 1.05562 1.02954 1.86590 1.25377 1.33003 1.83109 1.24900 0.93326 0.81534 0.71688 1.90661 1.67385 1.36876 1.46231 1.21384 0.84272 0.85663 1.01725 0.84606 1.86766 1.74917 1.17471 1.54337 1.22939 0.88754 1.02293 0.95667 1.62944 1.04593 1.27821 1.30130 1.23249 0.94530 0.88238 1.00818 1.22833 0.97463 1.01492 0.95226 1.22707 0.97802 0.95677 0.98792 1.21785 0.96656 0.92951 0.90144 1.23501 0.98000 0.99600 0.97483 1.22343 0.93706 0.93774 0.92641 1.48644 1.48860 1.12461 1.25581 1.21323 0.96986 0.78600 1.00933 1.19179 0.94525 0.93886 0.93565 1.21549 1.09323 0.92261 1.35301 0.91641 1.25991 0.94879 1.04309 0.94396 1.70115 1.16422 1.33801 1.36744 0.85393 0.78943 0.78379 0.78007 1.18998 1.20959 1.18885 1.21232 0.80435 0.87712 0.80423 1.90615 1.39439 1.79702 1.35640 0.91016 0.91572 0.86023 0.75405 0.89673 0.89778 0.90862 0.89551 0.93503 0.87430 0.86112 0.91780 0.88753 0.84539 0.90490 0.88232 0.89123 0.93263 1.01105 0.98074 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.36 -8.31 10.50 -51.42 -0.54 -8.85 16 3 C 0.44 9.68 7.27 71.24 0.52 10.19 16 4 O -0.52 -12.99 16.07 28.39 0.46 -12.53 16 5 C 0.13 2.56 3.50 29.84 0.10 2.67 16 6 H 0.14 3.05 8.14 -2.38 -0.02 3.03 16 7 O -0.53 -8.75 9.90 -129.95 -1.29 -10.04 16 8 C 0.03 0.61 3.32 86.30 0.29 0.90 16 9 N -0.53 -13.07 4.97 -841.77 -4.18 -17.25 16 10 C 0.06 1.09 4.96 86.75 0.43 1.52 16 11 C -0.13 -2.46 7.08 32.06 0.23 -2.24 16 12 C -0.11 -2.03 6.06 31.59 0.19 -1.84 16 13 C 0.08 1.94 0.99 3.28 0.00 1.95 16 14 C -0.15 -2.67 5.07 31.46 0.16 -2.51 16 15 C 0.10 2.32 7.36 86.87 0.64 2.96 16 16 N -0.62 -22.68 2.94 -818.11 -2.41 -25.08 16 17 C 0.14 6.26 5.88 86.38 0.51 6.77 16 18 C 0.03 1.46 5.30 29.85 0.16 1.62 16 19 C -0.55 -31.76 9.11 25.60 0.23 -31.52 16 20 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 21 C 0.00 0.15 5.46 84.66 0.46 0.61 16 22 N -0.93 -57.82 13.29 21.45 0.28 -57.53 16 23 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 24 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 26 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 27 C 0.51 19.85 6.86 87.62 0.60 20.45 16 28 O -0.58 -28.55 17.60 -3.02 -0.05 -28.60 16 29 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 30 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 31 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.39 3.95 8.33 -74.06 -0.62 3.33 16 33 H 0.09 2.03 6.80 -2.39 -0.02 2.01 16 34 H 0.08 1.07 7.03 -2.39 -0.02 1.05 16 35 H 0.07 1.62 7.89 -2.39 -0.02 1.60 16 36 H 0.09 1.07 6.06 -2.39 -0.01 1.06 16 37 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.12 1.20 7.45 -2.38 -0.02 1.18 16 40 H 0.06 1.37 7.81 -2.39 -0.02 1.35 16 41 H 0.09 1.78 4.92 -2.39 -0.01 1.77 16 42 H 0.14 1.20 7.44 -2.39 -0.02 1.18 16 43 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 44 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.09 3.44 8.14 -2.38 -0.02 3.42 16 46 H 0.05 2.33 7.92 -2.39 -0.02 2.31 16 47 H -0.03 -1.91 8.14 -2.39 -0.02 -1.93 16 48 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 49 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -85.18 392.15 0.37 -84.81 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.35 Total: 15.08 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 5.72 Total: 13.17 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -6.30 Total: -99.87 kcal Atomic # 8 Polarization: -58.59 SS G_CDS: -1.42 Total: -60.02 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -85.18 0.37 -84.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274604549.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.151 kcal (2) G-P(sol) polarization free energy of solvation -85.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds