Wall clock time and date at job start Sat Apr 11 2020 06:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.47214 * 2 1 4 4 C 1.42904 * 113.99886 * 179.97438 * 3 2 1 5 5 H 1.08996 * 112.90789 * 18.75136 * 4 3 2 6 6 C 1.53953 * 113.66637 * 247.55703 * 4 3 2 7 7 C 1.53784 * 87.01869 * 220.07188 * 6 4 3 8 8 H 1.09002 * 113.60798 * 270.77039 * 7 6 4 9 9 N 1.46498 * 113.61668 * 139.95454 * 7 6 4 10 10 C 1.34777 * 120.00297 * 105.85799 * 9 7 6 11 11 O 1.21349 * 119.99732 * 0.02562 * 10 9 7 12 12 C 1.49451 * 120.00198 * 180.02562 * 10 9 7 13 13 O 1.21340 * 119.99710 * 5.14700 * 12 10 9 14 14 N 1.34771 * 119.99678 * 185.14847 * 12 10 9 15 15 C 1.46508 * 119.99812 * 175.09155 * 14 12 10 16 16 C 1.53002 * 109.47068 * 185.70356 * 15 14 12 17 17 C 1.50696 * 115.55359 * 32.48654 * 16 15 14 18 18 H 1.07998 * 120.00504 * 267.36741 * 17 16 15 19 19 C 1.37884 * 119.99288 * 87.36166 * 17 16 15 20 20 N 1.31515 * 119.99340 * 178.82192 * 19 17 16 21 21 Si 1.86799 * 120.00321 * 358.82693 * 19 17 16 22 22 H 1.48497 * 109.47074 * 91.27884 * 21 19 17 23 23 H 1.48499 * 109.46748 * 211.27496 * 21 19 17 24 24 H 1.48497 * 109.46892 * 331.27718 * 21 19 17 25 25 C 1.53002 * 117.49207 * 246.78456 * 16 15 14 26 26 C 1.52996 * 117.49466 * 178.16522 * 16 15 14 27 27 C 1.53781 * 87.17240 * 25.36255 * 7 6 4 28 28 H 1.08997 * 113.61150 * 89.16496 * 27 7 6 29 29 O 1.42902 * 113.61123 * 220.06219 * 27 7 6 30 30 C 1.42901 * 113.99760 * 210.00209 * 29 27 7 31 31 H 1.09009 * 109.47241 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47103 * 300.00021 * 1 2 3 33 33 H 1.08992 * 109.47138 * 60.00194 * 1 2 3 34 34 H 1.09002 * 109.47121 * 239.99487 * 2 1 3 35 35 H 1.09003 * 109.46771 * 120.00024 * 2 1 3 36 36 H 1.08995 * 113.66354 * 105.54316 * 6 4 3 37 37 H 1.09006 * 113.61186 * 334.58843 * 6 4 3 38 38 H 0.97001 * 119.99688 * 285.86488 * 9 7 6 39 39 H 0.97000 * 120.00847 * 355.08682 * 14 12 10 40 40 H 1.08998 * 109.47091 * 65.69812 * 15 14 12 41 41 H 1.09003 * 109.46441 * 305.69882 * 15 14 12 42 42 H 0.97004 * 119.99547 * 179.97438 * 20 19 17 43 43 H 1.08992 * 117.50375 * 359.97438 * 25 16 15 44 44 H 1.09003 * 117.49938 * 145.02403 * 25 16 15 45 45 H 1.09003 * 117.49547 * 214.97367 * 26 16 15 46 46 H 1.08997 * 117.50114 * 359.97099 * 26 16 15 47 47 H 1.08993 * 109.47166 * 299.99716 * 30 29 27 48 48 H 1.08999 * 109.47402 * 60.00365 * 30 29 27 49 49 H 1.09009 * 109.46945 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.9290 0.5457 -0.3218 6 6 4.0039 2.0456 1.3040 7 6 4.9896 2.8314 0.4231 8 1 5.9145 2.2931 0.2157 9 7 5.2206 4.2036 0.8811 10 6 6.3811 4.5260 1.4858 11 8 7.2350 3.6796 1.6505 12 6 6.6164 5.9258 1.9535 13 8 5.7288 6.7493 1.8739 14 7 7.8145 6.2733 2.4636 15 6 8.0811 7.6686 2.8221 16 6 9.5457 7.8171 3.2391 17 6 10.5173 6.9042 2.5367 18 1 10.7738 5.9501 2.9728 19 6 11.0788 7.2871 1.3369 20 7 11.9444 6.5006 0.7354 21 14 10.6102 8.9229 0.5662 22 1 11.5516 9.9749 1.0269 23 1 10.6788 8.8107 -0.9130 24 1 9.2280 9.2832 0.9718 25 6 9.8321 8.1635 4.7016 26 6 10.0355 9.2179 3.6118 27 6 3.9488 2.7250 -0.7039 28 1 3.2305 3.5447 -0.7136 29 8 4.5205 2.4712 -1.9888 30 6 3.7687 3.0128 -3.0767 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 4.4843 1.3043 1.9426 37 1 3.3005 2.6792 1.8443 38 1 4.5381 4.8802 0.7492 39 1 8.5003 5.5998 2.5935 40 1 7.4360 7.9605 3.6508 41 1 7.8812 8.3090 1.9630 42 1 12.3392 6.7698 -0.1088 43 1 8.9772 8.2859 5.3666 44 1 10.7235 7.7309 5.1561 45 1 11.0607 9.4790 3.3492 46 1 9.3145 10.0336 3.5595 47 1 2.7686 2.5796 -3.0784 48 1 3.6959 4.0946 -2.9651 49 1 4.2681 2.7769 -4.0165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324035466.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:46 Heat of formation + Delta-G solvation = -109.082975 kcal Electronic energy + Delta-G solvation = -29907.073091 eV Core-core repulsion = 25643.547545 eV Total energy + Delta-G solvation = -4263.525546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.75547 -39.74500 -38.15886 -37.55630 -37.02987 -36.11852 -33.82255 -32.89572 -32.18394 -31.17552 -27.41101 -27.31999 -25.74850 -24.98334 -24.84107 -23.20021 -22.56172 -21.72191 -20.55141 -19.87940 -19.38636 -18.02112 -17.83265 -16.89137 -16.47500 -16.19095 -16.15645 -15.75921 -15.56870 -15.28168 -15.13586 -14.84167 -14.45589 -14.05636 -13.94223 -13.74483 -13.45406 -13.19272 -13.00067 -12.90835 -12.82127 -12.44779 -12.36435 -12.19011 -12.06180 -11.78906 -11.59279 -11.49091 -11.32055 -11.17660 -11.03938 -10.72706 -10.53657 -10.30430 -10.24794 -9.70801 -9.68015 -9.31626 -9.14247 -9.11859 -8.75113 -8.63765 -8.30838 -6.19183 -4.25604 1.80096 2.54277 3.23604 3.25789 3.35837 3.38812 3.58282 3.66702 4.02914 4.14881 4.16760 4.36040 4.47379 4.51973 4.69400 4.78067 4.78838 4.94653 4.97502 4.99855 5.12111 5.15225 5.16796 5.19015 5.32072 5.43031 5.51047 5.58449 5.61479 5.66486 5.70853 5.79302 5.92144 6.03988 6.19188 6.27250 6.39572 6.43201 6.64932 6.73895 6.78163 6.95875 6.98958 7.05364 7.24301 7.63379 7.86513 8.18206 8.36673 8.55434 8.82002 9.43064 10.91335 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018043 B = 0.002390 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.456170 B =11710.656355 C =12337.321231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.373 6.373 4 C 0.054 3.946 5 H 0.101 0.899 6 C -0.165 4.165 7 C 0.130 3.870 8 H 0.131 0.869 9 N -0.697 5.697 10 C 0.512 3.488 11 O -0.507 6.507 12 C 0.496 3.504 13 O -0.547 6.547 14 N -0.657 5.657 15 C 0.148 3.852 16 C -0.019 4.019 17 C -0.498 4.498 18 H 0.082 0.918 19 C 0.084 3.916 20 N -0.887 5.887 21 Si 0.878 3.122 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.256 1.256 25 C -0.177 4.177 26 C -0.194 4.194 27 C 0.060 3.940 28 H 0.102 0.898 29 O -0.370 6.370 30 C 0.029 3.971 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.412 0.588 39 H 0.424 0.576 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.266 0.734 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.043 0.957 48 H 0.045 0.955 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.822 -10.031 -2.794 23.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.292 6.292 4 C -0.005 4.005 5 H 0.119 0.881 6 C -0.204 4.204 7 C 0.024 3.976 8 H 0.148 0.852 9 N -0.350 5.350 10 C 0.293 3.707 11 O -0.380 6.380 12 C 0.276 3.724 13 O -0.427 6.427 14 N -0.309 5.309 15 C 0.025 3.975 16 C -0.020 4.020 17 C -0.535 4.535 18 H 0.100 0.900 19 C -0.120 4.120 20 N -0.523 5.523 21 Si 0.706 3.294 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.181 1.181 25 C -0.214 4.214 26 C -0.232 4.232 27 C 0.001 3.999 28 H 0.120 0.880 29 O -0.288 6.288 30 C -0.067 4.067 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.248 0.752 39 H 0.264 0.736 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.093 0.907 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.578 -10.030 -2.926 23.079 hybrid contribution -0.192 0.875 -0.647 1.105 sum -20.770 -9.156 -3.572 22.978 Atomic orbital electron populations 1.21753 0.93738 1.02293 1.03132 1.22542 0.95561 0.83745 1.00272 1.87921 1.20049 1.26668 1.94556 1.24075 0.81558 0.98799 0.96092 0.88117 1.23770 0.98753 1.00672 0.97203 1.22494 0.99103 0.83246 0.92753 0.85154 1.45565 1.18551 1.11390 1.59544 1.20435 0.82144 0.89441 0.78673 1.90789 1.43151 1.50370 1.53719 1.19918 0.84134 0.87979 0.80394 1.90689 1.43410 1.51879 1.56745 1.45902 1.13949 1.12308 1.58763 1.21233 0.96407 0.80668 0.99242 1.19609 0.92275 0.95276 0.94837 1.20155 1.23804 1.04057 1.05450 0.90020 1.24983 0.93782 0.96853 0.96394 1.69893 1.28085 1.37109 1.17192 0.86891 0.80271 0.84378 0.77883 1.20324 1.22077 1.18087 1.22925 1.02084 1.04213 0.92174 1.22959 1.01717 0.92769 1.05729 1.24525 0.94830 0.97338 0.83220 0.88010 1.87975 1.49770 1.77308 1.13777 1.22845 0.96077 0.97912 0.89890 0.91085 0.91784 0.91920 0.93236 0.93123 0.89311 0.88241 0.75202 0.73557 0.92770 0.91435 0.92374 0.90754 0.89304 0.89144 0.90703 0.93784 0.93668 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.51 16 2 C 0.06 0.39 6.50 37.16 0.24 0.63 16 3 O -0.37 -3.53 10.36 -35.23 -0.36 -3.90 16 4 C 0.05 0.50 4.14 -25.83 -0.11 0.39 16 5 H 0.10 0.86 7.87 -51.93 -0.41 0.45 16 6 C -0.16 -1.59 7.73 -25.83 -0.20 -1.79 16 7 C 0.13 1.53 4.04 -67.12 -0.27 1.26 16 8 H 0.13 1.75 7.50 -51.93 -0.39 1.36 16 9 N -0.70 -9.42 5.35 -53.45 -0.29 -9.71 16 10 C 0.51 8.90 7.89 -11.58 -0.09 8.81 16 11 O -0.51 -10.04 16.11 5.50 0.09 -9.95 16 12 C 0.50 9.52 7.88 -11.59 -0.09 9.43 16 13 O -0.55 -10.91 16.49 5.51 0.09 -10.82 16 14 N -0.66 -13.50 5.27 -60.73 -0.32 -13.82 16 15 C 0.15 3.06 5.60 -4.04 -0.02 3.04 16 16 C -0.02 -0.41 1.24 -155.66 -0.19 -0.60 16 17 C -0.50 -12.97 7.79 -34.44 -0.27 -13.23 16 18 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 19 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 20 N -0.89 -26.13 13.96 55.43 0.77 -25.36 16 21 Si 0.88 21.23 25.16 -169.99 -4.28 16.95 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.26 -5.91 5.30 56.52 0.30 -5.61 16 25 C -0.18 -3.39 9.88 -26.73 -0.26 -3.65 16 26 C -0.19 -3.92 7.59 -26.73 -0.20 -4.12 16 27 C 0.06 0.62 3.89 -25.92 -0.10 0.52 16 28 H 0.10 0.96 7.84 -51.93 -0.41 0.55 16 29 O -0.37 -4.26 10.71 -35.23 -0.38 -4.63 16 30 C 0.03 0.25 10.85 101.05 1.10 1.35 16 31 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.41 4.96 8.19 -40.82 -0.33 4.62 16 39 H 0.42 9.15 6.76 -40.82 -0.28 8.88 16 40 H 0.05 1.03 7.89 -51.93 -0.41 0.62 16 41 H 0.07 1.48 6.45 -51.93 -0.33 1.14 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 44 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 45 H 0.09 1.92 7.21 -51.93 -0.37 1.55 16 46 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 47 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 LS Contribution 405.52 15.07 6.11 6.11 Total: -1.00 -31.35 405.52 -6.84 -38.19 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -8.09 Total: 13.19 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -0.19 Total: 3.73 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.17 Total: -48.88 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.56 Total: -29.30 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.28 Total: 16.95 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.35 -6.84 -38.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324035466.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.894 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds