Wall clock time and date at job start Sat Apr 11 2020 06:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.47214 * 2 1 4 4 C 1.42904 * 113.99886 * 179.97438 * 3 2 1 5 5 H 1.08996 * 112.90789 * 18.75136 * 4 3 2 6 6 C 1.53953 * 113.66637 * 247.55703 * 4 3 2 7 7 C 1.53784 * 87.01869 * 220.07188 * 6 4 3 8 8 H 1.09002 * 113.60798 * 270.77039 * 7 6 4 9 9 N 1.46498 * 113.61668 * 139.95454 * 7 6 4 10 10 C 1.34777 * 120.00297 * 105.85799 * 9 7 6 11 11 O 1.21349 * 119.99732 * 0.02562 * 10 9 7 12 12 C 1.49451 * 120.00198 * 180.02562 * 10 9 7 13 13 O 1.21340 * 119.99710 * 5.14700 * 12 10 9 14 14 N 1.34771 * 119.99678 * 185.14847 * 12 10 9 15 15 C 1.46508 * 119.99812 * 175.09155 * 14 12 10 16 16 C 1.53002 * 109.47068 * 185.70356 * 15 14 12 17 17 C 1.50696 * 115.55359 * 32.48654 * 16 15 14 18 18 H 1.07998 * 120.00504 * 267.36741 * 17 16 15 19 19 C 1.37884 * 119.99288 * 87.36166 * 17 16 15 20 20 N 1.31515 * 119.99340 * 178.82192 * 19 17 16 21 21 Si 1.86799 * 120.00321 * 358.82693 * 19 17 16 22 22 H 1.48497 * 109.47074 * 91.27884 * 21 19 17 23 23 H 1.48499 * 109.46748 * 211.27496 * 21 19 17 24 24 H 1.48497 * 109.46892 * 331.27718 * 21 19 17 25 25 C 1.53002 * 117.49207 * 246.78456 * 16 15 14 26 26 C 1.52996 * 117.49466 * 178.16522 * 16 15 14 27 27 C 1.53781 * 87.17240 * 25.36255 * 7 6 4 28 28 H 1.08997 * 113.61150 * 89.16496 * 27 7 6 29 29 O 1.42902 * 113.61123 * 220.06219 * 27 7 6 30 30 C 1.42901 * 113.99760 * 210.00209 * 29 27 7 31 31 H 1.09009 * 109.47241 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47103 * 300.00021 * 1 2 3 33 33 H 1.08992 * 109.47138 * 60.00194 * 1 2 3 34 34 H 1.09002 * 109.47121 * 239.99487 * 2 1 3 35 35 H 1.09003 * 109.46771 * 120.00024 * 2 1 3 36 36 H 1.08995 * 113.66354 * 105.54316 * 6 4 3 37 37 H 1.09006 * 113.61186 * 334.58843 * 6 4 3 38 38 H 0.97001 * 119.99688 * 285.86488 * 9 7 6 39 39 H 0.97000 * 120.00847 * 355.08682 * 14 12 10 40 40 H 1.08998 * 109.47091 * 65.69812 * 15 14 12 41 41 H 1.09003 * 109.46441 * 305.69882 * 15 14 12 42 42 H 0.97004 * 119.99547 * 179.97438 * 20 19 17 43 43 H 1.08992 * 117.50375 * 359.97438 * 25 16 15 44 44 H 1.09003 * 117.49938 * 145.02403 * 25 16 15 45 45 H 1.09003 * 117.49547 * 214.97367 * 26 16 15 46 46 H 1.08997 * 117.50114 * 359.97099 * 26 16 15 47 47 H 1.08993 * 109.47166 * 299.99716 * 30 29 27 48 48 H 1.08999 * 109.47402 * 60.00365 * 30 29 27 49 49 H 1.09009 * 109.46945 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.9290 0.5457 -0.3218 6 6 4.0039 2.0456 1.3040 7 6 4.9896 2.8314 0.4231 8 1 5.9145 2.2931 0.2157 9 7 5.2206 4.2036 0.8811 10 6 6.3811 4.5260 1.4858 11 8 7.2350 3.6796 1.6505 12 6 6.6164 5.9258 1.9535 13 8 5.7288 6.7493 1.8739 14 7 7.8145 6.2733 2.4636 15 6 8.0811 7.6686 2.8221 16 6 9.5457 7.8171 3.2391 17 6 10.5173 6.9042 2.5367 18 1 10.7738 5.9501 2.9728 19 6 11.0788 7.2871 1.3369 20 7 11.9444 6.5006 0.7354 21 14 10.6102 8.9229 0.5662 22 1 11.5516 9.9749 1.0269 23 1 10.6788 8.8107 -0.9130 24 1 9.2280 9.2832 0.9718 25 6 9.8321 8.1635 4.7016 26 6 10.0355 9.2179 3.6118 27 6 3.9488 2.7250 -0.7039 28 1 3.2305 3.5447 -0.7136 29 8 4.5205 2.4712 -1.9888 30 6 3.7687 3.0128 -3.0767 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 4.4843 1.3043 1.9426 37 1 3.3005 2.6792 1.8443 38 1 4.5381 4.8802 0.7492 39 1 8.5003 5.5998 2.5935 40 1 7.4360 7.9605 3.6508 41 1 7.8812 8.3090 1.9630 42 1 12.3392 6.7698 -0.1088 43 1 8.9772 8.2859 5.3666 44 1 10.7235 7.7309 5.1561 45 1 11.0607 9.4790 3.3492 46 1 9.3145 10.0336 3.5595 47 1 2.7686 2.5796 -3.0784 48 1 3.6959 4.0946 -2.9651 49 1 4.2681 2.7769 -4.0165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324035466.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:45 Heat of formation + Delta-G solvation = -133.360301 kcal Electronic energy + Delta-G solvation = -29908.125835 eV Core-core repulsion = 25643.547545 eV Total energy + Delta-G solvation = -4264.578290 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.91733 -40.91576 -39.57617 -38.67062 -38.29336 -37.06232 -35.26644 -34.25702 -34.11020 -31.75646 -28.97588 -28.03871 -27.62275 -26.26807 -25.61972 -23.96202 -23.55308 -23.29400 -21.59839 -21.34560 -20.92171 -19.45798 -18.74931 -18.28532 -17.67800 -17.63307 -17.17056 -16.87618 -16.70327 -16.56583 -16.26427 -16.10875 -15.77742 -15.43108 -15.21896 -14.79904 -14.71875 -14.51728 -14.19858 -14.11596 -14.06109 -13.86461 -13.45801 -13.10543 -13.05527 -12.81266 -12.73130 -12.61521 -12.44100 -12.31996 -12.15097 -12.12014 -12.00540 -11.81814 -11.56197 -11.08861 -11.01062 -10.75678 -10.64838 -10.54316 -10.41135 -10.13388 -9.93667 -8.30471 -6.38595 0.34305 1.27735 1.33681 1.38250 1.47634 2.13683 2.35162 2.37171 2.78670 2.94263 3.05451 3.19219 3.28195 3.36098 3.52643 3.64354 3.74650 4.01858 4.16798 4.20274 4.27269 4.33203 4.37688 4.39840 4.49628 4.51852 4.52253 4.58933 4.66386 4.76800 4.77826 4.83529 4.86119 4.89310 4.93598 5.04381 5.04913 5.17624 5.18571 5.28886 5.37514 5.50966 5.68752 5.95074 6.03254 6.27023 6.27637 6.43321 6.71974 6.74271 6.97473 7.32657 8.83764 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018043 B = 0.002390 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.456170 B =11710.656355 C =12337.321231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.385 6.385 4 C 0.064 3.936 5 H 0.108 0.892 6 C -0.155 4.155 7 C 0.117 3.883 8 H 0.112 0.888 9 N -0.676 5.676 10 C 0.513 3.487 11 O -0.539 6.539 12 C 0.498 3.502 13 O -0.552 6.552 14 N -0.668 5.668 15 C 0.154 3.846 16 C -0.048 4.048 17 C -0.483 4.483 18 H 0.042 0.958 19 C 0.029 3.971 20 N -0.940 5.940 21 Si 0.929 3.071 22 H -0.266 1.266 23 H -0.305 1.305 24 H -0.234 1.234 25 C -0.156 4.156 26 C -0.188 4.188 27 C 0.064 3.936 28 H 0.113 0.887 29 O -0.393 6.393 30 C 0.024 3.976 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.420 0.580 39 H 0.417 0.583 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.264 0.736 43 H 0.108 0.892 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.104 0.896 47 H 0.055 0.945 48 H 0.048 0.952 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.531 -9.087 -2.274 25.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.304 6.304 4 C 0.005 3.995 5 H 0.126 0.874 6 C -0.193 4.193 7 C 0.012 3.988 8 H 0.130 0.870 9 N -0.330 5.330 10 C 0.294 3.706 11 O -0.415 6.415 12 C 0.278 3.722 13 O -0.432 6.432 14 N -0.319 5.319 15 C 0.031 3.969 16 C -0.050 4.050 17 C -0.520 4.520 18 H 0.060 0.940 19 C -0.170 4.170 20 N -0.579 5.579 21 Si 0.755 3.245 22 H -0.191 1.191 23 H -0.233 1.233 24 H -0.157 1.157 25 C -0.193 4.193 26 C -0.225 4.225 27 C 0.005 3.995 28 H 0.130 0.870 29 O -0.312 6.312 30 C -0.072 4.072 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.259 0.741 39 H 0.255 0.745 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.126 0.874 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.123 0.877 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -23.356 -9.069 -2.397 25.170 hybrid contribution 0.596 0.483 -0.777 1.092 sum -22.761 -8.586 -3.174 24.532 Atomic orbital electron populations 1.21767 0.92825 1.03374 1.02732 1.22751 0.96343 0.82784 1.00996 1.87902 1.19742 1.28208 1.94556 1.23916 0.81852 0.98536 0.95210 0.87431 1.23718 0.97908 1.00358 0.97354 1.22679 0.99234 0.82091 0.94802 0.87032 1.45523 1.17247 1.12520 1.57673 1.20187 0.82905 0.88420 0.79107 1.90783 1.44425 1.50823 1.55515 1.20163 0.83575 0.88694 0.79785 1.90675 1.43390 1.52305 1.56876 1.45959 1.14279 1.12232 1.59451 1.21178 0.95606 0.80527 0.99585 1.19532 0.92081 0.96245 0.97096 1.20264 1.23583 1.03164 1.05015 0.93960 1.25744 0.93957 1.00048 0.97202 1.70036 1.30475 1.39388 1.17967 0.86059 0.81332 0.80878 0.76262 1.19139 1.23302 1.15732 1.22979 1.02907 1.02343 0.91062 1.23018 1.01651 0.92577 1.05290 1.24530 0.94041 0.98378 0.82565 0.86969 1.87945 1.50896 1.77741 1.14608 1.23005 0.96587 0.98149 0.89449 0.89306 0.92223 0.92246 0.92549 0.92385 0.88732 0.87729 0.74136 0.74470 0.90307 0.92475 0.92666 0.87386 0.90031 0.90493 0.87734 0.92590 0.93339 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.28 71.98 0.74 -0.73 16 2 C 0.05 0.58 6.50 71.98 0.47 1.05 16 3 O -0.38 -6.56 10.36 -148.98 -1.54 -8.11 16 4 C 0.06 1.08 4.14 31.18 0.13 1.21 16 5 H 0.11 1.68 7.87 -2.39 -0.02 1.66 16 6 C -0.15 -2.77 7.73 31.18 0.24 -2.53 16 7 C 0.12 2.69 4.04 45.52 0.18 2.88 16 8 H 0.11 3.06 7.50 -2.39 -0.02 3.04 16 9 N -0.68 -17.85 5.35 -441.36 -2.36 -20.21 16 10 C 0.51 17.85 7.89 87.27 0.69 18.54 16 11 O -0.54 -21.91 16.11 -3.24 -0.05 -21.97 16 12 C 0.50 18.77 7.88 87.27 0.69 19.45 16 13 O -0.55 -21.11 16.49 -3.22 -0.05 -21.17 16 14 N -0.67 -27.22 5.27 -464.40 -2.45 -29.67 16 15 C 0.15 6.07 5.60 86.38 0.48 6.56 16 16 C -0.05 -2.05 1.24 -52.93 -0.07 -2.12 16 17 C -0.48 -25.63 7.79 25.60 0.20 -25.43 16 18 H 0.04 2.52 8.06 -2.91 -0.02 2.49 16 19 C 0.03 1.65 5.47 84.66 0.46 2.11 16 20 N -0.94 -57.52 13.96 21.45 0.30 -57.22 16 21 Si 0.93 43.58 25.16 68.60 1.73 45.30 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.31 -14.80 7.11 99.48 0.71 -14.10 16 24 H -0.23 -10.04 5.30 99.48 0.53 -9.51 16 25 C -0.16 -5.54 9.88 30.60 0.30 -5.24 16 26 C -0.19 -7.01 7.59 30.59 0.23 -6.78 16 27 C 0.06 1.24 3.89 31.12 0.12 1.36 16 28 H 0.11 1.92 7.84 -2.39 -0.02 1.90 16 29 O -0.39 -8.70 10.71 -148.98 -1.60 -10.30 16 30 C 0.02 0.38 10.85 113.37 1.23 1.61 16 31 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.42 9.57 8.19 -92.71 -0.76 8.81 16 39 H 0.42 18.43 6.76 -92.71 -0.63 17.80 16 40 H 0.08 2.71 7.89 -2.39 -0.02 2.69 16 41 H 0.06 2.35 6.45 -2.39 -0.02 2.34 16 42 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 43 H 0.11 3.15 8.04 -2.39 -0.02 3.13 16 44 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 45 H 0.08 3.09 7.21 -2.39 -0.02 3.08 16 46 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 47 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -68.76 405.52 -0.53 -69.29 By element: Atomic # 1 Polarization: 42.70 SS G_CDS: -0.60 Total: 42.10 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 6.10 Total: 11.95 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -4.51 Total: -107.10 kcal Atomic # 8 Polarization: -58.29 SS G_CDS: -3.24 Total: -61.53 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.73 Total: 45.30 kcal Total: -68.76 -0.53 -69.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324035466.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.069 kcal (2) G-P(sol) polarization free energy of solvation -68.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds