Wall clock time and date at job start Sat Apr 11 2020 06:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47285 * 2 1 4 4 C 1.42894 * 113.99817 * 180.02562 * 3 2 1 5 5 H 1.09001 * 112.91280 * 18.74756 * 4 3 2 6 6 C 1.53784 * 113.61494 * 247.49460 * 4 3 2 7 7 C 1.53779 * 87.08167 * 270.88457 * 6 4 3 8 8 H 1.08997 * 113.68941 * 89.12826 * 7 6 4 9 9 N 1.46495 * 113.61545 * 220.01527 * 7 6 4 10 10 C 1.34780 * 120.00187 * 252.49953 * 9 7 6 11 11 O 1.21347 * 119.99774 * 359.97438 * 10 9 7 12 12 C 1.49447 * 119.99999 * 179.97438 * 10 9 7 13 13 O 1.21357 * 120.00117 * 355.00568 * 12 10 9 14 14 N 1.34781 * 120.00192 * 175.00460 * 12 10 9 15 15 C 1.46500 * 120.00004 * 185.77831 * 14 12 10 16 16 C 1.52998 * 109.46810 * 183.69470 * 15 14 12 17 17 C 1.50704 * 115.54761 * 306.41381 * 16 15 14 18 18 H 1.08004 * 119.99689 * 145.11545 * 17 16 15 19 19 C 1.37874 * 120.00516 * 325.11255 * 17 16 15 20 20 N 1.31515 * 119.99600 * 349.44408 * 19 17 16 21 21 Si 1.86795 * 120.00177 * 169.44415 * 19 17 16 22 22 H 1.48503 * 109.47195 * 60.00655 * 21 19 17 23 23 H 1.48500 * 109.46976 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47310 * 299.99876 * 21 19 17 25 25 C 1.53003 * 117.49865 * 160.74693 * 16 15 14 26 26 C 1.52996 * 117.50031 * 92.08652 * 16 15 14 27 27 C 1.53782 * 87.08330 * 334.56467 * 7 6 4 28 28 H 1.08998 * 113.61543 * 270.79797 * 27 7 6 29 29 O 1.42901 * 113.61346 * 139.97796 * 27 7 6 30 30 C 1.42904 * 113.99825 * 150.00205 * 29 27 7 31 31 H 1.09001 * 109.47146 * 300.00365 * 1 2 3 32 32 H 1.08997 * 109.47164 * 60.00078 * 1 2 3 33 33 H 1.09000 * 109.47419 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47146 * 239.99635 * 2 1 3 35 35 H 1.08997 * 109.47164 * 119.99922 * 2 1 3 36 36 H 1.09004 * 113.61427 * 156.33731 * 6 4 3 37 37 H 1.08998 * 113.61437 * 25.43373 * 6 4 3 38 38 H 0.97003 * 119.99856 * 72.22246 * 9 7 6 39 39 H 0.97000 * 119.99266 * 5.77651 * 14 12 10 40 40 H 1.08995 * 109.47300 * 303.69440 * 15 14 12 41 41 H 1.08992 * 109.47038 * 63.69598 * 15 14 12 42 42 H 0.97004 * 119.99763 * 185.02891 * 20 19 17 43 43 H 1.08993 * 117.49897 * 0.02562 * 25 16 15 44 44 H 1.08999 * 117.49502 * 145.01752 * 25 16 15 45 45 H 1.09002 * 117.50066 * 214.97929 * 26 16 15 46 46 H 1.08991 * 117.50038 * 359.97438 * 26 16 15 47 47 H 1.09001 * 109.46987 * 300.00190 * 30 29 27 48 48 H 1.09006 * 109.47002 * 60.00125 * 30 29 27 49 49 H 1.08999 * 109.46818 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4600 -0.0006 5 1 3.9288 0.5458 -0.3236 6 6 4.0029 2.0461 1.3010 7 6 3.8397 3.4325 0.6560 8 1 2.8654 3.8870 0.8354 9 7 4.9523 4.3439 0.9343 10 6 4.7819 5.3756 1.7846 11 8 3.7066 5.5498 2.3193 12 6 5.9172 6.3051 2.0689 13 8 7.0163 6.0797 1.6063 14 7 5.7204 7.3935 2.8390 15 6 6.7973 8.3711 3.0145 16 6 6.3491 9.4522 4.0000 17 6 5.0452 10.1320 3.6701 18 1 4.3822 10.4427 4.4641 19 6 4.6987 10.3576 2.3548 20 7 5.5847 10.1732 1.4005 21 14 2.9708 10.9250 1.9282 22 1 2.6957 12.2211 2.5989 23 1 2.8542 11.0937 0.4575 24 1 1.9888 9.9108 2.3890 25 6 7.4376 10.2967 4.6654 26 6 6.6822 9.2424 5.4784 27 6 3.9484 2.7252 -0.7052 28 1 4.9715 2.6358 -1.0703 29 8 3.0505 3.2394 -1.6908 30 6 3.5359 3.1341 -3.0307 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 5.0412 1.7697 1.4850 37 1 3.3621 1.8901 2.1688 38 1 5.8129 4.2025 0.5096 39 1 4.8656 7.5295 3.2770 40 1 7.6834 7.8696 3.4036 41 1 7.0318 8.8297 2.0540 42 1 5.3646 10.4012 0.4837 43 1 8.4730 10.0824 4.4008 44 1 7.2105 11.3439 4.8649 45 1 5.9585 9.5965 6.2126 46 1 7.2203 8.3341 5.7491 47 1 4.4687 3.6903 -3.1239 48 1 3.7123 2.0858 -3.2719 49 1 2.7969 3.5454 -3.7182 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324035468.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:51 Heat of formation + Delta-G solvation = -106.417137 kcal Electronic energy + Delta-G solvation = -30278.415584 eV Core-core repulsion = 26015.005637 eV Total energy + Delta-G solvation = -4263.409947 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.67135 -39.58376 -37.91922 -37.35919 -36.66659 -35.97997 -33.55183 -32.71200 -32.16885 -30.96607 -27.27087 -26.96141 -25.64743 -24.95589 -24.77224 -23.12759 -22.51715 -21.22881 -20.38437 -19.65859 -19.34468 -18.01501 -17.62599 -16.80086 -16.24212 -16.03979 -15.99787 -15.80814 -15.32950 -15.15932 -14.81219 -14.68480 -14.35581 -13.88816 -13.81742 -13.56414 -13.26152 -13.18158 -12.93120 -12.86717 -12.60350 -12.34163 -11.92480 -11.81157 -11.75348 -11.62084 -11.51747 -11.32885 -11.10413 -10.96814 -10.85838 -10.81245 -10.50961 -10.27929 -10.00217 -9.64241 -9.58104 -9.18421 -9.04804 -8.93551 -8.85325 -8.31324 -8.00049 -6.09075 -4.18313 1.99566 2.80390 3.17179 3.28387 3.35117 3.39137 3.72164 3.81237 4.14120 4.22192 4.27996 4.33666 4.56176 4.68384 4.76407 4.78727 4.90836 4.97698 5.06267 5.08829 5.17439 5.21308 5.25025 5.42158 5.47628 5.48686 5.61925 5.67028 5.69790 5.85981 5.89525 5.97237 6.26477 6.40407 6.50120 6.56660 6.66187 6.83511 6.84422 7.01395 7.11357 7.21203 7.28119 7.43685 7.49735 7.87808 8.05779 8.28891 8.39026 8.78690 8.82250 9.43468 10.88396 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014043 B = 0.002682 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.377765 B =10435.693368 C =10968.032792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.348 6.348 4 C 0.056 3.944 5 H 0.081 0.919 6 C -0.171 4.171 7 C 0.133 3.867 8 H 0.131 0.869 9 N -0.701 5.701 10 C 0.511 3.489 11 O -0.515 6.515 12 C 0.495 3.505 13 O -0.550 6.550 14 N -0.649 5.649 15 C 0.158 3.842 16 C 0.035 3.965 17 C -0.500 4.500 18 H 0.063 0.937 19 C 0.076 3.924 20 N -0.872 5.872 21 Si 0.891 3.109 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.271 1.271 25 C -0.193 4.193 26 C -0.211 4.211 27 C 0.057 3.943 28 H 0.102 0.898 29 O -0.356 6.356 30 C 0.027 3.973 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.410 0.590 39 H 0.413 0.587 40 H 0.034 0.966 41 H 0.115 0.885 42 H 0.265 0.735 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.043 0.957 48 H 0.039 0.961 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.175 -20.771 -6.264 21.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.266 6.266 4 C -0.004 4.004 5 H 0.099 0.901 6 C -0.210 4.210 7 C 0.028 3.972 8 H 0.149 0.851 9 N -0.355 5.355 10 C 0.293 3.707 11 O -0.389 6.389 12 C 0.274 3.726 13 O -0.430 6.430 14 N -0.297 5.297 15 C 0.036 3.964 16 C 0.035 3.965 17 C -0.537 4.537 18 H 0.081 0.919 19 C -0.129 4.129 20 N -0.508 5.508 21 Si 0.719 3.281 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.196 1.196 25 C -0.232 4.232 26 C -0.248 4.248 27 C -0.002 4.002 28 H 0.120 0.880 29 O -0.273 6.273 30 C -0.069 4.069 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.246 0.754 39 H 0.250 0.750 40 H 0.053 0.947 41 H 0.132 0.868 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.062 0.938 48 H 0.057 0.943 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.510 -20.530 -6.375 21.782 hybrid contribution -0.373 0.081 -0.392 0.547 sum -3.883 -20.449 -6.767 21.886 Atomic orbital electron populations 1.21733 0.93589 1.02093 1.03472 1.22550 0.95816 0.83904 0.99803 1.88019 1.18342 1.25882 1.94342 1.23399 0.83051 0.97644 0.96290 0.90097 1.23820 1.02401 0.96180 0.98620 1.22868 0.92874 0.88556 0.92890 0.85124 1.45699 1.15091 1.28278 1.46399 1.20642 0.89018 0.81490 0.79577 1.90751 1.26863 1.72020 1.49295 1.19776 0.88009 0.83301 0.81524 1.90671 1.24961 1.74577 1.52803 1.45717 1.18903 1.20060 1.45059 1.21218 0.85741 0.86599 1.02888 1.19162 0.94982 0.94885 0.87508 1.20468 1.01756 1.39474 0.91987 0.91851 1.24967 0.97198 0.94464 0.96239 1.69810 1.33709 1.46063 1.01179 0.86644 0.84778 0.79323 0.77395 1.20183 1.21177 1.19606 1.22925 0.96431 0.96227 1.07618 1.22975 1.04483 0.99826 0.97549 1.24607 0.93996 0.92877 0.88766 0.88021 1.88083 1.42460 1.82066 1.14696 1.22842 1.00078 1.00029 0.83968 0.91663 0.91706 0.91217 0.93540 0.93405 0.88423 0.89123 0.75416 0.75003 0.94750 0.86756 0.92521 0.91437 0.90077 0.90451 0.91282 0.93824 0.94274 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.73 16 2 C 0.06 0.45 6.50 37.16 0.24 0.69 16 3 O -0.35 -3.92 9.89 -50.30 -0.50 -4.41 16 4 C 0.06 0.53 4.32 -25.91 -0.11 0.42 16 5 H 0.08 0.56 7.87 -51.93 -0.41 0.15 16 6 C -0.17 -1.71 7.71 -25.92 -0.20 -1.91 16 7 C 0.13 1.74 4.00 -67.12 -0.27 1.47 16 8 H 0.13 2.10 7.46 -51.93 -0.39 1.72 16 9 N -0.70 -10.22 5.35 -53.45 -0.29 -10.50 16 10 C 0.51 9.60 7.89 -11.58 -0.09 9.51 16 11 O -0.52 -10.87 16.09 5.50 0.09 -10.78 16 12 C 0.49 10.37 7.88 -11.58 -0.09 10.28 16 13 O -0.55 -12.04 16.48 5.49 0.09 -11.95 16 14 N -0.65 -14.52 5.27 -60.73 -0.32 -14.84 16 15 C 0.16 3.70 4.75 -4.04 -0.02 3.68 16 16 C 0.04 0.84 2.00 -155.66 -0.31 0.53 16 17 C -0.50 -12.94 8.27 -34.44 -0.28 -13.22 16 18 H 0.06 1.64 7.84 -52.48 -0.41 1.23 16 19 C 0.08 1.99 5.13 -17.82 -0.09 1.90 16 20 N -0.87 -23.45 10.75 55.43 0.60 -22.86 16 21 Si 0.89 20.91 29.55 -169.99 -5.02 15.89 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 25 C -0.19 -4.22 9.96 -26.69 -0.27 -4.48 16 26 C -0.21 -4.42 9.92 -26.69 -0.26 -4.68 16 27 C 0.06 0.61 4.01 -25.91 -0.10 0.50 16 28 H 0.10 0.83 7.85 -51.93 -0.41 0.42 16 29 O -0.36 -4.50 10.33 -50.30 -0.52 -5.02 16 30 C 0.03 0.25 10.85 101.05 1.10 1.34 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.41 5.24 8.21 -40.82 -0.34 4.90 16 39 H 0.41 9.46 7.41 -40.82 -0.30 9.15 16 40 H 0.03 0.77 8.06 -51.93 -0.42 0.36 16 41 H 0.11 3.00 6.04 -51.93 -0.31 2.69 16 42 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 44 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 45 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 46 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 411.53 15.07 6.20 6.20 Total: -1.00 -30.67 411.53 -8.09 -38.76 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -8.04 Total: 14.22 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -0.38 Total: 5.29 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.01 Total: -48.20 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.84 Total: -32.16 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.67 -8.09 -38.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324035468.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.658 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds