Wall clock time and date at job start Sat Apr 11 2020 06:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47285 * 2 1 4 4 C 1.42894 * 113.99817 * 180.02562 * 3 2 1 5 5 H 1.09001 * 112.91280 * 18.74756 * 4 3 2 6 6 C 1.53784 * 113.61494 * 247.49460 * 4 3 2 7 7 C 1.53779 * 87.08167 * 270.88457 * 6 4 3 8 8 H 1.08997 * 113.68941 * 89.12826 * 7 6 4 9 9 N 1.46495 * 113.61545 * 220.01527 * 7 6 4 10 10 C 1.34780 * 120.00187 * 252.49953 * 9 7 6 11 11 O 1.21347 * 119.99774 * 359.97438 * 10 9 7 12 12 C 1.49447 * 119.99999 * 179.97438 * 10 9 7 13 13 O 1.21357 * 120.00117 * 355.00568 * 12 10 9 14 14 N 1.34781 * 120.00192 * 175.00460 * 12 10 9 15 15 C 1.46500 * 120.00004 * 185.77831 * 14 12 10 16 16 C 1.52998 * 109.46810 * 183.69470 * 15 14 12 17 17 C 1.50704 * 115.54761 * 306.41381 * 16 15 14 18 18 H 1.08004 * 119.99689 * 145.11545 * 17 16 15 19 19 C 1.37874 * 120.00516 * 325.11255 * 17 16 15 20 20 N 1.31515 * 119.99600 * 349.44408 * 19 17 16 21 21 Si 1.86795 * 120.00177 * 169.44415 * 19 17 16 22 22 H 1.48503 * 109.47195 * 60.00655 * 21 19 17 23 23 H 1.48500 * 109.46976 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47310 * 299.99876 * 21 19 17 25 25 C 1.53003 * 117.49865 * 160.74693 * 16 15 14 26 26 C 1.52996 * 117.50031 * 92.08652 * 16 15 14 27 27 C 1.53782 * 87.08330 * 334.56467 * 7 6 4 28 28 H 1.08998 * 113.61543 * 270.79797 * 27 7 6 29 29 O 1.42901 * 113.61346 * 139.97796 * 27 7 6 30 30 C 1.42904 * 113.99825 * 150.00205 * 29 27 7 31 31 H 1.09001 * 109.47146 * 300.00365 * 1 2 3 32 32 H 1.08997 * 109.47164 * 60.00078 * 1 2 3 33 33 H 1.09000 * 109.47419 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47146 * 239.99635 * 2 1 3 35 35 H 1.08997 * 109.47164 * 119.99922 * 2 1 3 36 36 H 1.09004 * 113.61427 * 156.33731 * 6 4 3 37 37 H 1.08998 * 113.61437 * 25.43373 * 6 4 3 38 38 H 0.97003 * 119.99856 * 72.22246 * 9 7 6 39 39 H 0.97000 * 119.99266 * 5.77651 * 14 12 10 40 40 H 1.08995 * 109.47300 * 303.69440 * 15 14 12 41 41 H 1.08992 * 109.47038 * 63.69598 * 15 14 12 42 42 H 0.97004 * 119.99763 * 185.02891 * 20 19 17 43 43 H 1.08993 * 117.49897 * 0.02562 * 25 16 15 44 44 H 1.08999 * 117.49502 * 145.01752 * 25 16 15 45 45 H 1.09002 * 117.50066 * 214.97929 * 26 16 15 46 46 H 1.08991 * 117.50038 * 359.97438 * 26 16 15 47 47 H 1.09001 * 109.46987 * 300.00190 * 30 29 27 48 48 H 1.09006 * 109.47002 * 60.00125 * 30 29 27 49 49 H 1.08999 * 109.46818 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4600 -0.0006 5 1 3.9288 0.5458 -0.3236 6 6 4.0029 2.0461 1.3010 7 6 3.8397 3.4325 0.6560 8 1 2.8654 3.8870 0.8354 9 7 4.9523 4.3439 0.9343 10 6 4.7819 5.3756 1.7846 11 8 3.7066 5.5498 2.3193 12 6 5.9172 6.3051 2.0689 13 8 7.0163 6.0797 1.6063 14 7 5.7204 7.3935 2.8390 15 6 6.7973 8.3711 3.0145 16 6 6.3491 9.4522 4.0000 17 6 5.0452 10.1320 3.6701 18 1 4.3822 10.4427 4.4641 19 6 4.6987 10.3576 2.3548 20 7 5.5847 10.1732 1.4005 21 14 2.9708 10.9250 1.9282 22 1 2.6957 12.2211 2.5989 23 1 2.8542 11.0937 0.4575 24 1 1.9888 9.9108 2.3890 25 6 7.4376 10.2967 4.6654 26 6 6.6822 9.2424 5.4784 27 6 3.9484 2.7252 -0.7052 28 1 4.9715 2.6358 -1.0703 29 8 3.0505 3.2394 -1.6908 30 6 3.5359 3.1341 -3.0307 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 5.0412 1.7697 1.4850 37 1 3.3621 1.8901 2.1688 38 1 5.8129 4.2025 0.5096 39 1 4.8656 7.5295 3.2770 40 1 7.6834 7.8696 3.4036 41 1 7.0318 8.8297 2.0540 42 1 5.3646 10.4012 0.4837 43 1 8.4730 10.0824 4.4008 44 1 7.2105 11.3439 4.8649 45 1 5.9585 9.5965 6.2126 46 1 7.2203 8.3341 5.7491 47 1 4.4687 3.6903 -3.1239 48 1 3.7123 2.0858 -3.2719 49 1 2.7969 3.5454 -3.7182 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324035468.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:50 Heat of formation + Delta-G solvation = -128.084722 kcal Electronic energy + Delta-G solvation = -30279.355161 eV Core-core repulsion = 26015.005637 eV Total energy + Delta-G solvation = -4264.349524 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.85595 -40.85829 -39.46813 -38.44052 -38.14578 -36.97917 -35.08074 -34.21081 -33.99727 -31.64185 -28.64371 -27.98875 -27.55282 -26.27930 -25.56908 -23.86400 -23.72166 -22.93374 -21.49363 -21.24636 -20.92710 -19.55848 -18.56374 -18.13282 -17.76428 -17.28546 -17.02756 -16.76577 -16.71496 -16.48068 -16.28652 -15.97702 -15.71826 -15.39498 -15.05724 -14.84365 -14.54113 -14.36898 -14.02505 -13.93729 -13.64913 -13.55597 -13.42658 -13.11084 -12.89878 -12.79324 -12.73264 -12.60031 -12.49182 -12.33605 -12.30054 -12.05520 -12.05006 -11.62262 -11.45062 -11.10778 -10.84475 -10.68668 -10.54629 -10.45713 -10.18356 -10.10242 -9.82932 -8.07907 -6.21123 0.41792 1.38144 1.40349 1.45120 1.48369 2.22802 2.38116 2.46386 2.72842 2.98931 3.06484 3.32746 3.44176 3.54240 3.67587 3.69913 3.94315 4.14703 4.21702 4.21899 4.30278 4.36909 4.49911 4.51292 4.52661 4.55326 4.70238 4.75395 4.75813 4.78753 4.85834 4.89624 4.96955 4.97474 5.05454 5.06880 5.23025 5.26997 5.29000 5.46257 5.55527 5.58986 5.88187 6.01978 6.13433 6.34139 6.42563 6.52653 6.77774 6.84590 7.08763 7.41530 8.86982 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014043 B = 0.002682 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.377765 B =10435.693368 C =10968.032792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.380 6.380 4 C 0.063 3.937 5 H 0.118 0.882 6 C -0.159 4.159 7 C 0.113 3.887 8 H 0.093 0.907 9 N -0.678 5.678 10 C 0.512 3.488 11 O -0.546 6.546 12 C 0.494 3.506 13 O -0.560 6.560 14 N -0.656 5.656 15 C 0.170 3.830 16 C 0.003 3.997 17 C -0.508 4.508 18 H 0.057 0.943 19 C 0.041 3.959 20 N -0.891 5.891 21 Si 0.937 3.063 22 H -0.269 1.269 23 H -0.289 1.289 24 H -0.277 1.277 25 C -0.189 4.189 26 C -0.188 4.188 27 C 0.060 3.940 28 H 0.133 0.867 29 O -0.390 6.390 30 C 0.022 3.978 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.421 0.579 39 H 0.409 0.591 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.260 0.740 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.048 0.952 48 H 0.061 0.939 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.511 -22.998 -6.535 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.299 6.299 4 C 0.004 3.996 5 H 0.136 0.864 6 C -0.198 4.198 7 C 0.009 3.991 8 H 0.111 0.889 9 N -0.331 5.331 10 C 0.293 3.707 11 O -0.423 6.423 12 C 0.274 3.726 13 O -0.441 6.441 14 N -0.303 5.303 15 C 0.047 3.953 16 C 0.002 3.998 17 C -0.545 4.545 18 H 0.075 0.925 19 C -0.161 4.161 20 N -0.528 5.528 21 Si 0.763 3.237 22 H -0.194 1.194 23 H -0.214 1.214 24 H -0.202 1.202 25 C -0.228 4.228 26 C -0.225 4.225 27 C 0.001 3.999 28 H 0.150 0.850 29 O -0.308 6.308 30 C -0.074 4.074 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.141 0.859 37 H 0.099 0.901 38 H 0.259 0.741 39 H 0.245 0.755 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.070 0.930 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.106 0.894 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.830 -22.789 -6.667 23.912 hybrid contribution -0.578 0.741 -0.322 0.994 sum -3.408 -22.048 -6.989 23.379 Atomic orbital electron populations 1.21768 0.93640 1.03236 1.02283 1.22749 0.95912 0.82794 1.01160 1.87998 1.19523 1.27960 1.94418 1.23423 0.82618 0.98424 0.95143 0.86393 1.23819 1.03806 0.93489 0.98680 1.23123 0.90513 0.89177 0.96310 0.88911 1.45652 1.16110 1.26857 1.44444 1.20279 0.87832 0.82126 0.80438 1.90740 1.27562 1.73017 1.50996 1.20162 0.88526 0.83202 0.80717 1.90650 1.25563 1.74893 1.52946 1.45704 1.18481 1.20448 1.45685 1.20938 0.86322 0.86724 1.01350 1.19224 0.95067 0.95961 0.89520 1.20672 1.02698 1.39295 0.91859 0.92491 1.25460 0.99384 0.94946 0.96352 1.69937 1.34688 1.47168 1.01030 0.85928 0.81839 0.79005 0.76888 1.19404 1.21441 1.20205 1.22930 0.96683 0.96146 1.06992 1.22980 1.03773 1.00090 0.95647 1.24757 0.95397 0.92483 0.87240 0.85003 1.88042 1.43819 1.82604 1.16343 1.23007 1.00287 1.01618 0.82459 0.92988 0.92743 0.88909 0.91853 0.92181 0.85881 0.90120 0.74120 0.75479 0.93967 0.89737 0.93014 0.90012 0.90518 0.89954 0.89386 0.93316 0.92063 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 10.28 71.98 0.74 -1.34 16 2 C 0.05 0.70 6.50 71.98 0.47 1.17 16 3 O -0.38 -8.09 9.89 -134.58 -1.33 -9.42 16 4 C 0.06 1.03 4.32 31.12 0.13 1.16 16 5 H 0.12 1.08 7.87 -2.39 -0.02 1.06 16 6 C -0.16 -2.88 7.71 31.12 0.24 -2.64 16 7 C 0.11 2.89 4.00 45.52 0.18 3.08 16 8 H 0.09 3.13 7.46 -2.39 -0.02 3.12 16 9 N -0.68 -19.31 5.35 -441.38 -2.36 -21.67 16 10 C 0.51 19.43 7.89 87.27 0.69 20.12 16 11 O -0.55 -23.70 16.09 -3.24 -0.05 -23.75 16 12 C 0.49 20.82 7.88 87.27 0.69 21.51 16 13 O -0.56 -24.32 16.48 -3.27 -0.05 -24.37 16 14 N -0.66 -29.66 5.27 -464.42 -2.45 -32.10 16 15 C 0.17 7.98 4.75 86.38 0.41 8.39 16 16 C 0.00 0.14 2.00 -52.93 -0.11 0.03 16 17 C -0.51 -26.41 8.27 25.60 0.21 -26.20 16 18 H 0.06 2.96 7.84 -2.91 -0.02 2.94 16 19 C 0.04 2.15 5.13 84.65 0.43 2.58 16 20 N -0.89 -48.77 10.75 21.45 0.23 -48.54 16 21 Si 0.94 43.42 29.55 68.60 2.03 45.45 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 25 C -0.19 -8.01 9.96 30.62 0.30 -7.71 16 26 C -0.19 -7.54 9.92 30.62 0.30 -7.23 16 27 C 0.06 1.16 4.01 31.12 0.12 1.29 16 28 H 0.13 1.68 7.85 -2.39 -0.02 1.66 16 29 O -0.39 -9.49 10.33 -134.58 -1.39 -10.88 16 30 C 0.02 0.36 10.85 113.37 1.23 1.59 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.42 10.09 8.21 -92.71 -0.76 9.33 16 39 H 0.41 19.12 7.41 -92.71 -0.69 18.44 16 40 H 0.04 1.88 8.06 -2.39 -0.02 1.86 16 41 H 0.08 4.52 6.04 -2.39 -0.01 4.51 16 42 H 0.26 13.97 8.32 -92.71 -0.77 13.20 16 43 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 44 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 45 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 46 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 47 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 49 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -67.33 411.53 0.20 -67.13 By element: Atomic # 1 Polarization: 42.82 SS G_CDS: -0.48 Total: 42.34 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 6.05 Total: 15.81 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -4.58 Total: -102.31 kcal Atomic # 8 Polarization: -65.60 SS G_CDS: -2.83 Total: -68.42 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -67.33 0.20 -67.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324035468.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.955 kcal (2) G-P(sol) polarization free energy of solvation -67.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds