Wall clock time and date at job start Sat Apr 11 2020 06:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99644 * 2 1 4 4 C 1.52997 * 109.46903 * 180.02562 * 3 2 1 5 5 C 1.53007 * 112.85014 * 295.63709 * 4 3 2 6 6 N 1.46505 * 109.46889 * 293.64501 * 5 4 3 7 7 C 1.34768 * 119.99681 * 175.02140 * 6 5 4 8 8 O 1.21352 * 120.00361 * 0.02562 * 7 6 5 9 9 C 1.49452 * 119.99737 * 179.97438 * 7 6 5 10 10 O 1.21341 * 120.00257 * 0.02562 * 9 7 6 11 11 N 1.34783 * 119.99837 * 180.02562 * 9 7 6 12 12 C 1.47426 * 125.64896 * 359.95462 * 11 9 7 13 13 C 1.54910 * 104.83086 * 204.16709 * 12 11 9 14 14 C 1.55158 * 101.58265 * 322.99045 * 13 12 11 15 15 O 1.42898 * 110.72326 * 277.14073 * 14 13 12 16 16 C 1.50706 * 110.87154 * 153.93570 * 14 13 12 17 17 H 1.07996 * 119.99853 * 2.54837 * 16 14 13 18 18 C 1.37871 * 119.99734 * 182.54863 * 16 14 13 19 19 N 1.31522 * 120.00459 * 359.97438 * 18 16 14 20 20 Si 1.86808 * 119.99878 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47072 * 89.99640 * 20 18 16 22 22 H 1.48495 * 109.47025 * 210.00225 * 20 18 16 23 23 H 1.48498 * 109.46732 * 330.00010 * 20 18 16 24 24 C 1.47026 * 125.64667 * 179.97438 * 11 9 7 25 25 C 1.53783 * 113.69292 * 66.90593 * 4 3 2 26 26 C 1.53781 * 87.08094 * 89.12459 * 25 4 3 27 27 C 1.53780 * 87.07908 * 25.43572 * 26 25 4 28 28 H 1.08991 * 109.47454 * 60.00357 * 1 2 3 29 29 H 1.09005 * 109.47204 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47225 * 299.99932 * 1 2 3 31 31 H 1.08996 * 109.47033 * 60.00095 * 3 2 1 32 32 H 1.09005 * 109.46911 * 299.99993 * 3 2 1 33 33 H 1.08996 * 109.47006 * 173.64433 * 5 4 3 34 34 H 1.09001 * 109.46952 * 53.64330 * 5 4 3 35 35 H 0.96998 * 119.99844 * 355.02429 * 6 5 4 36 36 H 1.09000 * 110.36702 * 323.00957 * 12 11 9 37 37 H 1.09004 * 110.36448 * 85.32720 * 12 11 9 38 38 H 1.09003 * 111.00169 * 204.91750 * 13 12 11 39 39 H 1.08992 * 111.00446 * 81.06557 * 13 12 11 40 40 H 0.96698 * 114.00278 * 174.97744 * 15 14 13 41 41 H 0.96994 * 119.99673 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.87949 * 59.48643 * 24 11 9 43 43 H 1.08998 * 110.01283 * 298.39142 * 24 11 9 44 44 H 1.09002 * 113.61160 * 203.67675 * 25 4 3 45 45 H 1.09001 * 113.61232 * 334.57857 * 25 4 3 46 46 H 1.08992 * 113.61712 * 270.88620 * 26 25 4 47 47 H 1.09004 * 113.68844 * 139.98894 * 26 25 4 48 48 H 1.09000 * 113.61040 * 220.01506 * 27 26 25 49 49 H 1.09002 * 113.61780 * 89.11678 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 6 4.0800 0.5295 1.2702 6 7 3.8279 1.4049 2.4176 7 6 4.1324 0.9884 3.6626 8 8 4.6157 -0.1115 3.8333 9 6 3.8757 1.8817 4.8330 10 8 3.3928 2.9817 4.6623 11 7 4.1807 1.4654 6.0781 12 6 4.7682 0.1592 6.4276 13 6 4.3539 -0.0805 7.9008 14 6 4.4470 1.3527 8.4878 15 8 5.7933 1.6633 8.8526 16 6 3.5264 1.5093 9.6707 17 1 2.9495 0.6663 10.0213 18 6 3.4209 2.7287 10.3053 19 7 4.1238 3.7552 9.8787 20 14 2.2803 2.9227 11.7721 21 1 3.0235 2.6169 13.0208 22 1 1.7756 4.3182 11.8254 23 1 1.1353 1.9870 11.6358 24 6 3.9821 2.2386 7.3128 25 6 4.1072 0.5856 -1.2963 26 6 4.1677 2.0224 -1.8412 27 6 4.2565 2.4893 -0.3787 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 5.1529 0.3685 1.1648 34 1 3.5826 -0.4276 1.4273 35 1 3.4419 2.2842 2.2811 36 1 4.3616 -0.6233 5.7869 37 1 5.8541 0.1961 6.3400 38 1 5.0527 -0.7528 8.3987 39 1 3.3351 -0.4627 7.9629 40 1 5.9194 2.5737 9.1531 41 1 4.0492 4.6131 10.3250 42 1 2.9269 2.4855 7.4298 43 1 4.5751 3.1525 7.2800 44 1 5.0870 0.1252 -1.1692 45 1 3.4037 -0.0542 -1.8292 46 1 3.2540 2.3370 -2.3452 47 1 5.0657 2.2331 -2.4220 48 1 3.6735 3.3866 -0.1707 49 1 5.2771 2.5495 -0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326110024.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:12 Heat of formation + Delta-G solvation = -138.677468 kcal Electronic energy + Delta-G solvation = -30691.189093 eV Core-core repulsion = 26426.380234 eV Total energy + Delta-G solvation = -4264.808859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.70303 -39.91412 -38.31250 -37.39281 -37.19054 -34.83563 -33.98401 -32.21569 -30.13908 -29.69829 -27.99036 -27.57929 -26.27204 -25.90208 -25.37509 -23.73480 -22.57456 -21.50895 -19.91064 -19.50329 -18.77621 -17.42654 -17.17951 -16.75437 -16.42952 -16.21451 -16.12955 -15.68574 -15.30482 -15.19610 -14.86670 -14.56936 -14.35204 -14.26392 -13.83720 -13.30268 -12.99754 -12.94581 -12.93005 -12.76444 -12.64284 -12.32429 -12.18851 -11.94428 -11.72414 -11.58886 -11.51467 -11.08136 -11.04253 -10.86672 -10.76769 -10.66323 -10.57639 -10.53536 -10.47807 -10.16608 -9.93779 -9.35469 -9.16846 -9.07960 -8.66750 -8.33573 -8.00727 -6.30601 -4.38658 1.81729 2.65212 3.20602 3.27932 3.30791 3.33341 3.61957 3.89359 4.17256 4.21754 4.26416 4.40139 4.53868 4.64414 4.73735 4.93381 4.97808 5.05021 5.09992 5.16079 5.20784 5.39585 5.41968 5.43359 5.49545 5.52196 5.58743 5.64982 5.75965 5.83584 5.89563 5.93352 6.04290 6.06372 6.20774 6.40046 6.52462 6.76625 6.81299 6.82900 6.84405 7.18453 7.24396 7.34712 7.71577 7.89599 8.03167 8.05220 8.44942 8.65053 9.29155 9.39087 10.77487 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018988 B = 0.002432 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.243941 B =11509.434239 C =11821.678494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.083 3.917 4 C -0.096 4.096 5 C 0.137 3.863 6 N -0.704 5.704 7 C 0.510 3.490 8 O -0.517 6.517 9 C 0.506 3.494 10 O -0.540 6.540 11 N -0.575 5.575 12 C 0.099 3.901 13 C -0.121 4.121 14 C 0.248 3.752 15 O -0.583 6.583 16 C -0.535 4.535 17 H 0.068 0.932 18 C 0.070 3.930 19 N -0.896 5.896 20 Si 0.905 3.095 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.099 3.901 25 C -0.118 4.118 26 C -0.142 4.142 27 C -0.130 4.130 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.409 0.591 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.383 0.617 41 H 0.270 0.730 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.663 -3.879 -22.143 22.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.007 3.993 4 C -0.097 4.097 5 C 0.014 3.986 6 N -0.358 5.358 7 C 0.292 3.708 8 O -0.392 6.392 9 C 0.288 3.712 10 O -0.420 6.420 11 N -0.307 5.307 12 C -0.023 4.023 13 C -0.159 4.159 14 C 0.207 3.793 15 O -0.392 6.392 16 C -0.574 4.574 17 H 0.086 0.914 18 C -0.133 4.133 19 N -0.535 5.535 20 Si 0.732 3.268 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.022 4.022 25 C -0.156 4.156 26 C -0.180 4.180 27 C -0.167 4.167 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.245 0.755 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.234 0.766 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.338 -4.677 -22.293 22.898 hybrid contribution -1.144 1.556 0.886 2.125 sum -3.481 -3.121 -21.407 21.911 Atomic orbital electron populations 1.22749 0.80831 1.02899 1.00012 1.87866 1.19690 1.27374 1.95386 1.22245 0.91421 0.85124 1.00546 1.22108 0.93809 0.98451 0.95318 1.21348 1.00526 0.93962 0.82747 1.45698 1.64061 1.20674 1.05382 1.20374 0.78954 0.87095 0.84406 1.90702 1.42262 1.21093 1.85139 1.19605 0.81235 0.86906 0.83443 1.90710 1.45104 1.21274 1.84880 1.48694 1.57464 1.18809 1.05715 1.22644 0.98299 0.84376 0.97012 1.22823 1.01397 0.98636 0.93036 1.19519 0.81460 0.88308 0.89973 1.86118 1.29177 1.36206 1.87724 1.21515 1.25308 0.96721 1.13813 0.91410 1.25081 0.95418 0.95485 0.97330 1.69644 1.40960 1.01807 1.41096 0.86382 0.80709 0.77468 0.82238 1.20346 1.21019 1.19701 1.23249 1.02039 0.95711 0.81236 1.22845 1.01475 0.96705 0.94613 1.22853 1.02260 0.96559 0.96280 1.22993 1.01198 0.96107 0.96416 0.94186 0.89509 0.93879 0.92721 0.92754 0.91089 0.90065 0.75507 0.89472 0.91367 0.90297 0.90501 0.76612 0.91958 0.90989 0.91123 0.89517 0.90523 0.90197 0.91073 0.90905 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.38 -3.90 10.23 -35.23 -0.36 -4.26 16 3 C 0.08 0.72 5.09 37.16 0.19 0.91 16 4 C -0.10 -0.81 0.63 -153.69 -0.10 -0.91 16 5 C 0.14 1.51 4.94 -4.03 -0.02 1.49 16 6 N -0.70 -9.30 5.21 -60.72 -0.32 -9.62 16 7 C 0.51 8.70 7.86 -11.59 -0.09 8.61 16 8 O -0.52 -9.50 13.78 5.49 0.08 -9.43 16 9 C 0.51 10.19 7.91 -11.58 -0.09 10.09 16 10 O -0.54 -11.74 16.80 5.50 0.09 -11.65 16 11 N -0.57 -12.29 3.33 -171.02 -0.57 -12.86 16 12 C 0.10 1.95 6.05 -2.53 -0.02 1.93 16 13 C -0.12 -2.51 6.23 -24.58 -0.15 -2.67 16 14 C 0.25 6.04 0.85 -89.93 -0.08 5.96 16 15 O -0.58 -14.77 13.07 -35.23 -0.46 -15.23 16 16 C -0.54 -13.96 8.12 -34.44 -0.28 -14.24 16 17 H 0.07 1.74 7.78 -52.49 -0.41 1.33 16 18 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 19 N -0.90 -23.61 10.98 55.43 0.61 -23.01 16 20 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 C 0.10 2.38 5.37 -3.06 -0.02 2.36 16 25 C -0.12 -0.85 7.17 -25.92 -0.19 -1.04 16 26 C -0.14 -0.88 7.73 -25.92 -0.20 -1.08 16 27 C -0.13 -0.93 6.90 -25.92 -0.18 -1.11 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.05 0.50 7.59 -51.93 -0.39 0.11 16 32 H 0.05 0.39 7.31 -51.93 -0.38 0.01 16 33 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 34 H 0.08 1.02 7.88 -51.93 -0.41 0.61 16 35 H 0.41 5.03 7.35 -40.82 -0.30 4.73 16 36 H 0.09 1.62 6.16 -51.93 -0.32 1.30 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 39 H 0.08 1.53 8.04 -51.93 -0.42 1.11 16 40 H 0.38 9.86 7.26 45.56 0.33 10.19 16 41 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.07 1.85 7.82 -51.93 -0.41 1.45 16 43 H 0.07 1.83 7.98 -51.93 -0.41 1.41 16 44 H 0.09 0.59 8.03 -51.93 -0.42 0.17 16 45 H 0.08 0.58 8.03 -51.93 -0.42 0.16 16 46 H 0.08 0.45 7.61 -51.93 -0.39 0.06 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 49 H 0.09 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 395.64 15.07 5.96 5.96 Total: -1.00 -29.61 395.64 -7.46 -37.08 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -7.28 Total: 14.28 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: -0.20 Total: 13.40 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -0.28 Total: -45.49 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -0.65 Total: -40.56 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.61 -7.46 -37.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326110024.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.599 kcal (2) G-P(sol) polarization free energy of solvation -29.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds