Wall clock time and date at job start Sat Apr 11 2020 06:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99988 * 2 1 4 4 C 1.53001 * 109.46864 * 209.99790 * 3 2 1 5 5 C 1.53000 * 109.46955 * 179.97438 * 4 3 2 6 6 C 1.53007 * 109.47280 * 59.99983 * 5 4 3 7 7 N 1.46497 * 109.46895 * 60.00159 * 6 5 4 8 8 C 1.34774 * 120.00160 * 155.00237 * 7 6 5 9 9 O 1.21348 * 119.99666 * 0.02562 * 8 7 6 10 10 C 1.49448 * 120.00247 * 180.02562 * 8 7 6 11 11 O 1.21355 * 120.00006 * 359.97438 * 10 8 7 12 12 N 1.34774 * 120.00247 * 179.97438 * 10 8 7 13 13 C 1.47290 * 125.79121 * 359.97438 * 12 10 8 14 14 C 1.54325 * 107.30599 * 178.92556 * 13 12 10 15 15 C 1.55154 * 102.94303 * 337.81911 * 14 13 12 16 16 O 1.42902 * 111.00280 * 277.42723 * 15 14 13 17 17 C 1.50693 * 111.03939 * 153.59058 * 15 14 13 18 18 H 1.08004 * 120.00401 * 6.33015 * 17 15 14 19 19 C 1.37876 * 120.00383 * 186.33190 * 17 15 14 20 20 N 1.31512 * 119.99646 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 120.00223 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47147 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.46990 * 119.99902 * 21 19 17 24 24 H 1.48499 * 109.46928 * 239.99675 * 21 19 17 25 25 C 1.47425 * 125.65138 * 179.97438 * 12 10 8 26 26 C 1.53001 * 109.46995 * 300.00268 * 6 5 4 27 27 C 1.53000 * 109.47326 * 59.99760 * 26 6 5 28 28 H 1.08990 * 109.46939 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46833 * 300.00413 * 1 2 3 30 30 H 1.09001 * 109.47002 * 59.99576 * 1 2 3 31 31 H 1.08995 * 109.47137 * 330.00056 * 3 2 1 32 32 H 1.08999 * 109.46989 * 60.00575 * 4 3 2 33 33 H 1.09002 * 109.47303 * 299.99733 * 4 3 2 34 34 H 1.09008 * 109.47312 * 300.00125 * 5 4 3 35 35 H 1.08992 * 109.47190 * 180.02562 * 5 4 3 36 36 H 1.09002 * 109.47024 * 179.97438 * 6 5 4 37 37 H 0.97005 * 120.00064 * 334.99341 * 7 6 5 38 38 H 1.09004 * 109.85762 * 59.50172 * 13 12 10 39 39 H 1.08995 * 110.00297 * 298.43119 * 13 12 10 40 40 H 1.09002 * 110.72180 * 219.45147 * 14 13 12 41 41 H 1.08997 * 110.72163 * 96.18354 * 14 13 12 42 42 H 0.96703 * 114.00194 * 173.65090 * 16 15 14 43 43 H 0.97010 * 119.99834 * 180.02562 * 20 19 17 44 44 H 1.09002 * 110.36696 * 85.25946 * 25 12 10 45 45 H 1.08995 * 110.36608 * 323.04783 * 25 12 10 46 46 H 1.08994 * 109.46933 * 180.02562 * 26 6 5 47 47 H 1.09008 * 109.46988 * 299.99484 * 26 6 5 48 48 H 1.09003 * 109.46687 * 179.97438 * 27 26 6 49 49 H 1.08995 * 109.47098 * 59.99751 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.3590 1.2632 -0.7212 5 6 3.9810 2.6611 -0.7218 6 6 4.1883 3.1277 0.7206 7 7 5.0827 2.1955 1.4115 8 6 5.8068 2.6144 2.4682 9 8 5.7177 3.7637 2.8474 10 6 6.7196 1.6637 3.1727 11 8 6.8084 0.5143 2.7936 12 7 7.4442 2.0827 4.2290 13 6 7.4359 3.4429 4.7941 14 6 8.3951 3.4435 6.0031 15 6 8.4579 1.9443 6.3976 16 8 7.3427 1.5824 7.2145 17 6 9.7574 1.6207 7.0886 18 1 10.4482 2.4126 7.3381 19 6 10.0647 0.3138 7.4024 20 7 9.2234 -0.6505 7.0991 21 14 11.6752 -0.0872 8.2597 22 1 12.4389 1.1654 8.4893 23 1 11.3929 -0.7413 9.5626 24 1 12.4742 -1.0045 7.4081 25 6 8.3787 1.2547 5.0128 26 6 2.8396 3.1698 1.4418 27 6 2.2176 1.7720 1.4423 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.3450 1.9994 -0.5138 32 1 3.2112 0.9313 -1.7489 33 1 4.0242 0.5693 -0.2073 34 1 3.3156 3.3547 -1.2359 35 1 4.9416 2.6311 -1.2360 36 1 4.6319 4.1233 0.7201 37 1 5.1535 1.2767 1.1086 38 1 6.4286 3.7024 5.1199 39 1 7.7799 4.1588 4.0477 40 1 7.9870 4.0402 6.8189 41 1 9.3807 3.8077 5.7133 42 1 7.2858 0.6362 7.4058 43 1 9.4393 -1.5700 7.3202 44 1 9.3607 1.2397 4.5397 45 1 7.9925 0.2406 5.1155 46 1 2.9873 3.5027 2.4691 47 1 2.1742 3.8635 0.9276 48 1 1.2570 1.8021 1.9566 49 1 2.8830 1.0785 1.9564 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326128210.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:16 Heat of formation + Delta-G solvation = -191.726326 kcal Electronic energy + Delta-G solvation = -31045.338324 eV Core-core repulsion = 26778.229093 eV Total energy + Delta-G solvation = -4267.109231 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.96807 -40.69426 -39.59183 -38.87035 -37.75603 -36.13385 -34.25414 -34.22457 -31.96237 -31.88741 -30.43536 -29.68336 -27.74202 -27.24133 -25.55697 -23.83681 -23.63229 -22.92713 -21.58986 -21.07544 -20.30774 -19.16961 -18.82270 -17.93847 -17.63275 -17.29868 -17.08264 -16.97483 -16.41056 -16.27975 -16.09672 -15.91925 -15.37304 -15.14123 -14.86248 -14.82784 -14.67784 -14.41866 -14.19825 -13.95448 -13.53547 -13.48800 -13.31842 -13.18231 -13.04617 -12.87054 -12.67060 -12.54005 -12.47547 -12.37235 -12.20426 -12.18494 -12.10911 -11.90010 -11.49678 -11.35798 -11.22605 -10.76088 -10.57641 -10.51570 -10.33097 -10.19113 -9.65140 -8.25808 -6.42700 0.34936 1.29255 1.42446 1.45580 1.56271 2.12826 2.37052 2.52103 2.81749 3.00172 3.31601 3.65892 3.69508 3.76627 3.97334 4.04972 4.05920 4.14018 4.14460 4.31173 4.31789 4.41725 4.46145 4.49751 4.53276 4.59003 4.65680 4.73253 4.83449 4.87043 4.94137 4.96780 5.04830 5.05064 5.11343 5.14188 5.15223 5.20837 5.30329 5.32358 5.39746 5.42899 5.73805 5.99432 6.07135 6.32058 6.36879 6.61938 6.68079 6.93545 7.25392 7.33929 8.79958 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020140 B = 0.002528 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.942302 B =11074.755512 C =11611.064804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.091 3.909 4 C -0.121 4.121 5 C -0.112 4.112 6 C 0.137 3.863 7 N -0.684 5.684 8 C 0.519 3.481 9 O -0.528 6.528 10 C 0.498 3.502 11 O -0.564 6.564 12 N -0.583 5.583 13 C 0.120 3.880 14 C -0.115 4.115 15 C 0.233 3.767 16 O -0.588 6.588 17 C -0.553 4.553 18 H 0.070 0.930 19 C 0.026 3.974 20 N -0.915 5.915 21 Si 0.966 3.034 22 H -0.264 1.264 23 H -0.281 1.281 24 H -0.282 1.282 25 C 0.105 3.895 26 C -0.123 4.123 27 C -0.141 4.141 28 H 0.089 0.911 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.412 0.588 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.374 0.626 43 H 0.270 0.730 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.106 0.894 48 H 0.067 0.933 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.990 7.739 -17.390 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C 0.033 3.967 4 C -0.159 4.159 5 C -0.150 4.150 6 C 0.034 3.966 7 N -0.338 5.338 8 C 0.299 3.701 9 O -0.404 6.404 10 C 0.281 3.719 11 O -0.445 6.445 12 N -0.315 5.315 13 C -0.001 4.001 14 C -0.153 4.153 15 C 0.192 3.808 16 O -0.395 6.395 17 C -0.591 4.591 18 H 0.089 0.911 19 C -0.175 4.175 20 N -0.554 5.554 21 Si 0.791 3.209 22 H -0.188 1.188 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.017 4.017 26 C -0.161 4.161 27 C -0.179 4.179 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.132 0.868 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.250 0.750 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.222 0.778 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.124 0.876 48 H 0.086 0.914 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.094 8.262 -17.418 24.484 hybrid contribution 0.839 -1.779 0.827 2.134 sum -14.255 6.483 -16.590 22.814 Atomic orbital electron populations 1.22940 0.79893 1.03488 1.00792 1.87910 1.21179 1.28981 1.95140 1.22240 0.95385 0.84368 0.94674 1.21636 0.94994 0.97658 1.01632 1.21801 1.03119 0.96640 0.93443 1.21385 0.89231 0.93548 0.92459 1.45969 1.41935 1.16249 1.29661 1.19725 0.81262 0.87219 0.81926 1.90706 1.66113 1.18672 1.64938 1.20380 0.82043 0.88059 0.81374 1.90704 1.67410 1.20055 1.66291 1.48767 1.40314 1.14395 1.28025 1.22194 1.00476 0.81794 0.95676 1.22725 0.99789 0.96197 0.96576 1.19878 0.85048 0.90764 0.85079 1.86123 1.50467 1.30200 1.72729 1.21777 1.03966 0.93546 1.39829 0.91136 1.25834 1.00346 0.96113 0.95176 1.69836 1.37565 1.00846 1.47154 0.85378 0.79222 0.78294 0.77959 1.18803 1.20677 1.20746 1.23054 0.90390 0.95169 0.93097 1.21865 0.96078 0.97057 1.01130 1.21995 1.00978 0.96948 0.97954 0.89221 0.93796 0.92381 0.89600 0.89395 0.92900 0.86845 0.89637 0.88635 0.75010 0.91331 0.89559 0.89619 0.88838 0.77758 0.92088 0.92583 0.92495 0.93061 0.87604 0.91442 0.93841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.82 113.37 1.23 1.55 16 2 O -0.41 -8.16 10.35 -148.98 -1.54 -9.70 16 3 C 0.09 1.40 2.61 30.60 0.08 1.48 16 4 C -0.12 -1.75 5.40 30.59 0.17 -1.58 16 5 C -0.11 -1.27 5.61 30.60 0.17 -1.10 16 6 C 0.14 2.43 2.78 44.99 0.13 2.55 16 7 N -0.68 -17.35 4.23 -443.86 -1.88 -19.22 16 8 C 0.52 17.27 7.82 87.27 0.68 17.95 16 9 O -0.53 -18.23 13.81 -3.24 -0.04 -18.27 16 10 C 0.50 20.57 7.92 87.27 0.69 21.26 16 11 O -0.56 -25.88 16.73 -3.26 -0.05 -25.93 16 12 N -0.58 -25.24 3.34 -812.69 -2.71 -27.95 16 13 C 0.12 4.58 5.50 86.68 0.48 5.05 16 14 C -0.12 -4.61 6.13 31.78 0.19 -4.42 16 15 C 0.23 11.42 0.87 -10.15 -0.01 11.41 16 16 O -0.59 -30.68 13.16 -148.98 -1.96 -32.64 16 17 C -0.55 -28.71 8.27 25.60 0.21 -28.50 16 18 H 0.07 3.55 7.79 -2.91 -0.02 3.53 16 19 C 0.03 1.37 5.29 84.65 0.45 1.82 16 20 N -0.91 -49.53 10.69 21.45 0.23 -49.30 16 21 Si 0.97 41.60 29.54 68.60 2.03 43.63 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 25 C 0.11 5.19 5.38 86.85 0.47 5.66 16 26 C -0.12 -2.10 5.60 30.59 0.17 -1.93 16 27 C -0.14 -2.64 5.38 30.60 0.16 -2.48 16 28 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.04 0.53 7.87 -2.38 -0.02 0.52 16 30 H 0.06 0.54 8.08 -2.39 -0.02 0.52 16 31 H 0.09 0.91 7.79 -2.39 -0.02 0.89 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 0.99 6.51 -2.39 -0.02 0.97 16 34 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.10 1.76 7.58 -2.39 -0.02 1.75 16 37 H 0.41 10.51 6.34 -92.70 -0.59 9.92 16 38 H 0.07 2.63 7.59 -2.38 -0.02 2.61 16 39 H 0.09 2.92 7.71 -2.39 -0.02 2.90 16 40 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 41 H 0.09 3.43 8.03 -2.39 -0.02 3.42 16 42 H 0.37 20.24 7.56 -74.06 -0.56 19.68 16 43 H 0.27 13.98 8.31 -92.70 -0.77 13.21 16 44 H 0.06 2.83 8.03 -2.39 -0.02 2.81 16 45 H 0.06 3.17 7.32 -2.39 -0.02 3.15 16 46 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.11 1.16 8.14 -2.38 -0.02 1.15 16 48 H 0.07 1.20 7.87 -2.39 -0.02 1.18 16 49 H 0.04 1.08 7.60 -2.39 -0.02 1.07 16 Total: -1.00 -65.45 387.52 -0.84 -66.29 By element: Atomic # 1 Polarization: 44.55 SS G_CDS: -0.18 Total: 44.37 kcal Atomic # 6 Polarization: 23.46 SS G_CDS: 5.27 Total: 28.73 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -4.36 Total: -96.48 kcal Atomic # 8 Polarization: -82.94 SS G_CDS: -3.60 Total: -86.54 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -65.45 -0.84 -66.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326128210.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.434 kcal (2) G-P(sol) polarization free energy of solvation -65.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds