Wall clock time and date at job start Sat Apr 11 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42892 * 109.47049 * 2 1 4 4 C 1.42904 * 114.00100 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47448 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.46978 * 65.00081 * 5 4 3 7 7 C 1.42894 * 114.00214 * 180.02562 * 6 5 4 8 8 C 1.53944 * 113.74306 * 111.25994 * 7 6 5 9 9 N 1.47926 * 85.99843 * 138.00634 * 8 7 6 10 10 C 1.34780 * 134.50389 * 155.35471 * 9 8 7 11 11 O 1.21342 * 120.00110 * 179.97438 * 10 9 8 12 12 C 1.49455 * 119.99686 * 0.02562 * 10 9 8 13 13 O 1.21349 * 120.00200 * 354.42025 * 12 10 9 14 14 N 1.34771 * 119.99689 * 174.42250 * 12 10 9 15 15 C 1.46500 * 119.99946 * 185.53155 * 14 12 10 16 16 C 1.53000 * 109.47232 * 185.19489 * 15 14 12 17 17 C 1.50702 * 115.55340 * 57.83222 * 16 15 14 18 18 H 1.07998 * 119.99800 * 264.67276 * 17 16 15 19 19 C 1.37871 * 119.99887 * 84.66788 * 17 16 15 20 20 N 1.31519 * 120.00072 * 1.98337 * 19 17 16 21 21 Si 1.86800 * 120.00005 * 181.98707 * 19 17 16 22 22 H 1.48496 * 109.47095 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47350 * 119.99994 * 21 19 17 24 24 H 1.48496 * 109.47185 * 239.99955 * 21 19 17 25 25 C 1.53009 * 117.49822 * 272.16301 * 16 15 14 26 26 C 1.53002 * 117.49951 * 203.50529 * 16 15 14 27 27 C 1.47579 * 91.00369 * 335.35716 * 9 8 7 28 28 H 1.09005 * 109.46704 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46446 * 299.99148 * 1 2 3 30 30 H 1.08991 * 109.47154 * 59.99679 * 1 2 3 31 31 H 1.09008 * 109.46710 * 240.00723 * 2 1 3 32 32 H 1.08995 * 109.47176 * 120.00841 * 2 1 3 33 33 H 1.09008 * 109.46850 * 60.00436 * 4 3 2 34 34 H 1.08995 * 109.47052 * 300.00372 * 4 3 2 35 35 H 1.09001 * 109.46805 * 305.00315 * 5 4 3 36 36 H 1.08994 * 109.47254 * 185.00284 * 5 4 3 37 37 H 1.08997 * 112.94194 * 339.66856 * 7 6 5 38 38 H 1.09003 * 113.76899 * 252.35858 * 8 7 6 39 39 H 1.08999 * 113.76993 * 23.75867 * 8 7 6 40 40 H 0.97004 * 120.00321 * 5.52939 * 14 12 10 41 41 H 1.08997 * 109.47168 * 305.19054 * 15 14 12 42 42 H 1.09002 * 109.47407 * 65.19468 * 15 14 12 43 43 H 0.97004 * 119.99538 * 185.00604 * 20 19 17 44 44 H 1.09000 * 117.49443 * 0.02562 * 25 16 15 45 45 H 1.08994 * 117.49445 * 145.01942 * 25 16 15 46 46 H 1.09001 * 117.49950 * 214.97861 * 26 16 15 47 47 H 1.09001 * 117.49970 * 359.97047 * 26 16 15 48 48 H 1.08993 * 113.77279 * 270.33734 * 27 9 8 49 49 H 1.09004 * 113.76817 * 138.93729 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8255 2.9384 0.0001 6 8 3.3987 3.5447 1.2217 7 6 3.7195 4.9333 1.3245 8 6 2.4901 5.8586 1.2768 9 7 3.1476 6.6166 2.3637 10 6 3.0792 7.8886 2.8039 11 8 3.7554 8.2413 3.7476 12 6 2.1695 8.8644 2.1302 13 8 1.5693 8.5412 1.1262 14 7 2.0157 10.1034 2.6377 15 6 1.0345 11.0191 2.0502 16 6 1.1503 12.3894 2.7209 17 6 2.5058 13.0423 2.6359 18 1 3.2096 12.9331 3.4477 19 6 2.8475 13.7790 1.5217 20 7 1.9765 13.9444 0.5502 21 14 4.5477 14.5419 1.3917 22 1 5.3334 14.2099 2.6072 23 1 5.2408 14.0053 0.1930 24 1 4.4206 16.0165 1.2712 25 6 0.3307 12.6257 3.9912 26 6 -0.0772 13.3019 2.6799 27 6 3.9089 5.4202 2.7726 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8333 0.9767 -0.8909 34 1 3.8340 0.9764 0.8891 35 1 3.3492 3.4419 -0.8412 36 1 4.9082 3.0255 -0.0899 37 1 4.5221 5.2349 0.6516 38 1 2.3958 6.4162 0.3449 39 1 1.5625 5.3726 1.5789 40 1 2.5547 10.3890 3.3920 41 1 1.2259 11.1201 0.9820 42 1 0.0306 10.6232 2.2037 43 1 2.2396 14.4002 -0.2646 44 1 -0.2905 11.8048 4.3493 45 1 0.7720 13.2537 4.7651 46 1 0.0958 14.3745 2.5917 47 1 -0.9670 12.9263 2.1747 48 1 3.3972 4.8057 3.5131 49 1 4.9465 5.6279 3.0340 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326144955.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:30 Heat of formation + Delta-G solvation = -95.355229 kcal Electronic energy + Delta-G solvation = -29179.502836 eV Core-core repulsion = 24916.572570 eV Total energy + Delta-G solvation = -4262.930266 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.65582 -39.27108 -38.48128 -37.74033 -36.70791 -36.45904 -33.39069 -32.15464 -31.97247 -30.02028 -28.80762 -26.93187 -26.39837 -25.38722 -23.35249 -23.15284 -22.91226 -21.30159 -20.98006 -19.62874 -18.95944 -17.89620 -17.52415 -17.23062 -16.77915 -16.31256 -16.09692 -15.61404 -15.39833 -15.22502 -14.88189 -14.66903 -14.34636 -14.17999 -13.81504 -13.67090 -13.44616 -13.11058 -12.93855 -12.87780 -12.72271 -12.65405 -12.10639 -11.91344 -11.88606 -11.69135 -11.60597 -11.48524 -11.32034 -11.09211 -10.98920 -10.91647 -10.51524 -10.25236 -10.00067 -9.87063 -9.59955 -9.15478 -9.06473 -8.88084 -8.52117 -8.40590 -8.11242 -6.09084 -4.17765 1.80947 2.33313 3.25120 3.26241 3.29882 3.35123 3.39194 3.63750 3.73465 4.14448 4.36688 4.53008 4.59507 4.65754 4.76598 4.79090 4.87071 4.89653 4.97197 5.02600 5.11255 5.19986 5.26072 5.28500 5.32678 5.35313 5.39768 5.48965 5.54987 5.68259 5.72153 5.77981 5.97435 6.27821 6.41058 6.46154 6.68143 6.76418 6.77220 6.88147 7.05741 7.08305 7.33527 7.40986 7.48321 7.74274 7.81627 8.18597 8.31537 8.57983 8.84575 9.50034 10.99022 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016945 B = 0.002001 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.962848 B =13990.704812 C =14477.912780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.064 3.936 5 C 0.061 3.939 6 O -0.361 6.361 7 C 0.049 3.951 8 C 0.097 3.903 9 N -0.623 5.623 10 C 0.535 3.465 11 O -0.519 6.519 12 C 0.500 3.500 13 O -0.535 6.535 14 N -0.665 5.665 15 C 0.161 3.839 16 C 0.020 3.980 17 C -0.497 4.497 18 H 0.062 0.938 19 C 0.073 3.927 20 N -0.875 5.875 21 Si 0.889 3.111 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.211 4.211 26 C -0.141 4.141 27 C 0.112 3.888 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.413 0.587 41 H 0.078 0.922 42 H 0.042 0.958 43 H 0.261 0.739 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.065 0.935 48 H 0.097 0.903 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.974 -26.396 -1.677 26.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.012 4.012 5 C -0.016 4.016 6 O -0.279 6.279 7 C -0.010 4.010 8 C -0.026 4.026 9 N -0.362 5.362 10 C 0.320 3.680 11 O -0.394 6.394 12 C 0.279 3.721 13 O -0.413 6.413 14 N -0.314 5.314 15 C 0.038 3.962 16 C 0.019 3.981 17 C -0.535 4.535 18 H 0.080 0.920 19 C -0.131 4.131 20 N -0.511 5.511 21 Si 0.717 3.283 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.248 4.248 26 C -0.179 4.179 27 C -0.010 4.010 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.250 0.750 41 H 0.096 0.904 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.083 0.917 48 H 0.115 0.885 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.606 -25.983 -1.805 26.096 hybrid contribution 1.425 0.482 -0.087 1.506 sum 3.031 -25.502 -1.892 25.751 Atomic orbital electron populations 1.21742 0.93621 1.02170 1.03424 1.22459 0.95833 0.83813 0.99846 1.87990 1.20381 1.26224 1.95367 1.22513 0.82372 0.95506 1.00858 1.22633 0.98460 0.92605 0.87859 1.87996 1.80363 1.21659 1.37882 1.24266 0.97704 0.81469 0.97585 1.23874 0.97103 0.89963 0.91641 1.49369 1.44540 1.07419 1.34887 1.20180 0.83114 0.81449 0.83257 1.90756 1.43794 1.77375 1.27446 1.19755 0.83336 0.83757 0.85219 1.90692 1.48175 1.78209 1.24270 1.45820 1.39583 1.11314 1.34734 1.21154 0.87948 0.88170 0.98918 1.19053 0.93145 0.91415 0.94439 1.20404 0.97959 1.31061 1.04070 0.91972 1.24985 0.96838 0.95198 0.96077 1.70002 1.33275 1.41876 1.05984 0.86575 0.84525 0.78979 0.78222 1.19582 1.20977 1.20988 1.23065 1.06005 1.03197 0.92525 1.22474 0.98012 0.99277 0.98142 1.23391 0.98076 0.83177 0.96371 0.91193 0.91631 0.91788 0.93601 0.93432 0.91824 0.92406 0.91869 0.91430 0.88046 0.88215 0.88526 0.75037 0.90383 0.93941 0.92935 0.91580 0.90201 0.89474 0.91690 0.88526 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.56 16 2 C 0.06 0.38 6.66 37.16 0.25 0.63 16 3 O -0.38 -3.55 10.31 -40.07 -0.41 -3.96 16 4 C 0.06 0.43 6.32 37.16 0.23 0.67 16 5 C 0.06 0.44 6.17 37.16 0.23 0.66 16 6 O -0.36 -3.47 10.33 -40.07 -0.41 -3.88 16 7 C 0.05 0.46 4.48 -25.81 -0.12 0.35 16 8 C 0.10 1.17 7.65 -2.78 -0.02 1.15 16 9 N -0.62 -8.96 3.62 -178.84 -0.65 -9.61 16 10 C 0.54 9.61 8.12 -11.58 -0.09 9.51 16 11 O -0.52 -10.27 17.22 5.50 0.09 -10.18 16 12 C 0.50 9.95 7.87 -11.59 -0.09 9.86 16 13 O -0.53 -11.29 15.04 5.50 0.08 -11.21 16 14 N -0.66 -13.85 5.37 -60.73 -0.33 -14.18 16 15 C 0.16 3.62 5.57 -4.04 -0.02 3.60 16 16 C 0.02 0.48 1.51 -155.65 -0.23 0.24 16 17 C -0.50 -13.01 8.38 -34.44 -0.29 -13.30 16 18 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 19 C 0.07 1.96 5.43 -17.82 -0.10 1.86 16 20 N -0.88 -24.29 12.72 55.43 0.71 -23.59 16 21 Si 0.89 20.99 29.54 -169.99 -5.02 15.96 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C -0.21 -4.43 9.94 -26.69 -0.27 -4.69 16 26 C -0.14 -3.21 9.26 -26.69 -0.25 -3.46 16 27 C 0.11 1.20 8.67 -2.97 -0.03 1.17 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.24 8.14 -51.92 -0.42 -0.18 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.10 0.81 7.89 -51.93 -0.41 0.40 16 38 H 0.10 1.29 7.33 -51.93 -0.38 0.91 16 39 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.41 8.54 7.73 -40.82 -0.32 8.22 16 41 H 0.08 1.98 8.09 -51.93 -0.42 1.56 16 42 H 0.04 0.90 8.11 -51.93 -0.42 0.48 16 43 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 46 H 0.09 2.13 8.14 -51.93 -0.42 1.70 16 47 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 48 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 49 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 417.31 15.07 6.29 6.29 Total: -1.00 -31.67 417.31 -8.32 -39.98 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -8.26 Total: 6.67 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -0.41 Total: 7.70 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -0.27 Total: -47.37 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.65 Total: -29.23 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -31.67 -8.32 -39.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326144955.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.371 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds