Wall clock time and date at job start Sat Apr 11 2020 06:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42892 * 109.47049 * 2 1 4 4 C 1.42904 * 114.00100 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47448 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.46978 * 65.00081 * 5 4 3 7 7 C 1.42894 * 114.00214 * 180.02562 * 6 5 4 8 8 C 1.53944 * 113.74306 * 111.25994 * 7 6 5 9 9 N 1.47926 * 85.99843 * 138.00634 * 8 7 6 10 10 C 1.34780 * 134.50389 * 155.35471 * 9 8 7 11 11 O 1.21342 * 120.00110 * 179.97438 * 10 9 8 12 12 C 1.49455 * 119.99686 * 0.02562 * 10 9 8 13 13 O 1.21349 * 120.00200 * 354.42025 * 12 10 9 14 14 N 1.34771 * 119.99689 * 174.42250 * 12 10 9 15 15 C 1.46500 * 119.99946 * 185.53155 * 14 12 10 16 16 C 1.53000 * 109.47232 * 185.19489 * 15 14 12 17 17 C 1.50702 * 115.55340 * 57.83222 * 16 15 14 18 18 H 1.07998 * 119.99800 * 264.67276 * 17 16 15 19 19 C 1.37871 * 119.99887 * 84.66788 * 17 16 15 20 20 N 1.31519 * 120.00072 * 1.98337 * 19 17 16 21 21 Si 1.86800 * 120.00005 * 181.98707 * 19 17 16 22 22 H 1.48496 * 109.47095 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47350 * 119.99994 * 21 19 17 24 24 H 1.48496 * 109.47185 * 239.99955 * 21 19 17 25 25 C 1.53009 * 117.49822 * 272.16301 * 16 15 14 26 26 C 1.53002 * 117.49951 * 203.50529 * 16 15 14 27 27 C 1.47579 * 91.00369 * 335.35716 * 9 8 7 28 28 H 1.09005 * 109.46704 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46446 * 299.99148 * 1 2 3 30 30 H 1.08991 * 109.47154 * 59.99679 * 1 2 3 31 31 H 1.09008 * 109.46710 * 240.00723 * 2 1 3 32 32 H 1.08995 * 109.47176 * 120.00841 * 2 1 3 33 33 H 1.09008 * 109.46850 * 60.00436 * 4 3 2 34 34 H 1.08995 * 109.47052 * 300.00372 * 4 3 2 35 35 H 1.09001 * 109.46805 * 305.00315 * 5 4 3 36 36 H 1.08994 * 109.47254 * 185.00284 * 5 4 3 37 37 H 1.08997 * 112.94194 * 339.66856 * 7 6 5 38 38 H 1.09003 * 113.76899 * 252.35858 * 8 7 6 39 39 H 1.08999 * 113.76993 * 23.75867 * 8 7 6 40 40 H 0.97004 * 120.00321 * 5.52939 * 14 12 10 41 41 H 1.08997 * 109.47168 * 305.19054 * 15 14 12 42 42 H 1.09002 * 109.47407 * 65.19468 * 15 14 12 43 43 H 0.97004 * 119.99538 * 185.00604 * 20 19 17 44 44 H 1.09000 * 117.49443 * 0.02562 * 25 16 15 45 45 H 1.08994 * 117.49445 * 145.01942 * 25 16 15 46 46 H 1.09001 * 117.49950 * 214.97861 * 26 16 15 47 47 H 1.09001 * 117.49970 * 359.97047 * 26 16 15 48 48 H 1.08993 * 113.77279 * 270.33734 * 27 9 8 49 49 H 1.09004 * 113.76817 * 138.93729 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8255 2.9384 0.0001 6 8 3.3987 3.5447 1.2217 7 6 3.7195 4.9333 1.3245 8 6 2.4901 5.8586 1.2768 9 7 3.1476 6.6166 2.3637 10 6 3.0792 7.8886 2.8039 11 8 3.7554 8.2413 3.7476 12 6 2.1695 8.8644 2.1302 13 8 1.5693 8.5412 1.1262 14 7 2.0157 10.1034 2.6377 15 6 1.0345 11.0191 2.0502 16 6 1.1503 12.3894 2.7209 17 6 2.5058 13.0423 2.6359 18 1 3.2096 12.9331 3.4477 19 6 2.8475 13.7790 1.5217 20 7 1.9765 13.9444 0.5502 21 14 4.5477 14.5419 1.3917 22 1 5.3334 14.2099 2.6072 23 1 5.2408 14.0053 0.1930 24 1 4.4206 16.0165 1.2712 25 6 0.3307 12.6257 3.9912 26 6 -0.0772 13.3019 2.6799 27 6 3.9089 5.4202 2.7726 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8333 0.9767 -0.8909 34 1 3.8340 0.9764 0.8891 35 1 3.3492 3.4419 -0.8412 36 1 4.9082 3.0255 -0.0899 37 1 4.5221 5.2349 0.6516 38 1 2.3958 6.4162 0.3449 39 1 1.5625 5.3726 1.5789 40 1 2.5547 10.3890 3.3920 41 1 1.2259 11.1201 0.9820 42 1 0.0306 10.6232 2.2037 43 1 2.2396 14.4002 -0.2646 44 1 -0.2905 11.8048 4.3493 45 1 0.7720 13.2537 4.7651 46 1 0.0958 14.3745 2.5917 47 1 -0.9670 12.9263 2.1747 48 1 3.3972 4.8057 3.5131 49 1 4.9465 5.6279 3.0340 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326144955.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:29 Heat of formation + Delta-G solvation = -117.114657 kcal Electronic energy + Delta-G solvation = -29180.446396 eV Core-core repulsion = 24916.572570 eV Total energy + Delta-G solvation = -4263.873826 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.89496 -40.49538 -39.37204 -38.86111 -38.46972 -37.33980 -35.07479 -33.98748 -32.68597 -30.91959 -29.64774 -28.56158 -27.50516 -27.25774 -24.65015 -23.64049 -23.49029 -22.95229 -22.21534 -21.41365 -20.40156 -19.09819 -18.47095 -18.17164 -17.90642 -17.78390 -17.08945 -16.76624 -16.67904 -16.58682 -16.16507 -15.98364 -15.67760 -15.45539 -14.98102 -14.75196 -14.56831 -14.45314 -14.12175 -13.92315 -13.74934 -13.65783 -13.49551 -13.29924 -12.94097 -12.88351 -12.85400 -12.76361 -12.38455 -12.36234 -12.23943 -12.06982 -12.02721 -11.83416 -11.44133 -11.00922 -10.80378 -10.52791 -10.48203 -10.43727 -10.22040 -10.00597 -9.90071 -8.13065 -6.25590 0.33178 1.09236 1.38008 1.42067 1.51698 2.10361 2.31958 2.41304 2.65990 2.79860 3.14753 3.23258 3.34191 3.55510 3.79512 3.94900 4.17438 4.19407 4.20794 4.28973 4.30633 4.39571 4.48517 4.49266 4.52517 4.53688 4.56980 4.60276 4.61991 4.65094 4.66568 4.73374 4.90271 4.91819 4.94035 5.01419 5.06674 5.27182 5.29633 5.34994 5.52822 5.66458 5.75270 6.10460 6.20045 6.24440 6.34094 6.35728 6.67487 6.81388 6.98387 7.44029 8.94658 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016945 B = 0.002001 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.962848 B =13990.704812 C =14477.912780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.412 6.412 4 C 0.060 3.940 5 C 0.053 3.947 6 O -0.373 6.373 7 C 0.071 3.929 8 C 0.089 3.911 9 N -0.621 5.621 10 C 0.537 3.463 11 O -0.544 6.544 12 C 0.498 3.502 13 O -0.551 6.551 14 N -0.668 5.668 15 C 0.176 3.824 16 C -0.006 4.006 17 C -0.503 4.503 18 H 0.057 0.943 19 C 0.027 3.973 20 N -0.903 5.903 21 Si 0.945 3.055 22 H -0.267 1.267 23 H -0.285 1.285 24 H -0.281 1.281 25 C -0.181 4.181 26 C -0.146 4.146 27 C 0.111 3.889 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.414 0.586 41 H 0.043 0.957 42 H 0.055 0.945 43 H 0.259 0.741 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.108 0.892 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.005 -28.451 -1.306 28.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.332 6.332 4 C -0.016 4.016 5 C -0.023 4.023 6 O -0.291 6.291 7 C 0.012 3.988 8 C -0.033 4.033 9 N -0.358 5.358 10 C 0.320 3.680 11 O -0.422 6.422 12 C 0.278 3.722 13 O -0.430 6.430 14 N -0.318 5.318 15 C 0.053 3.947 16 C -0.007 4.007 17 C -0.541 4.541 18 H 0.075 0.925 19 C -0.174 4.174 20 N -0.541 5.541 21 Si 0.771 3.229 22 H -0.191 1.191 23 H -0.212 1.212 24 H -0.207 1.207 25 C -0.218 4.218 26 C -0.184 4.184 27 C -0.010 4.010 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.140 0.860 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.251 0.749 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.110 0.890 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.095 0.905 48 H 0.126 0.874 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.642 -28.091 -1.439 28.252 hybrid contribution 1.062 0.991 -0.238 1.472 sum 3.704 -27.101 -1.677 27.404 Atomic orbital electron populations 1.21774 0.93704 1.03149 1.02382 1.22608 0.95887 0.83065 1.00887 1.87949 1.21913 1.27754 1.95607 1.22687 0.81378 0.95425 1.02154 1.22893 1.00092 0.92646 0.86625 1.87985 1.80738 1.21203 1.39202 1.24026 0.96415 0.81389 0.97016 1.24062 0.98601 0.90205 0.90482 1.49515 1.44364 1.07047 1.34900 1.19652 0.82855 0.82390 0.83062 1.90739 1.44853 1.78104 1.28460 1.20204 0.83288 0.83764 0.84908 1.90676 1.48869 1.78522 1.24939 1.45759 1.39570 1.11619 1.34813 1.20811 0.88953 0.88241 0.96744 1.19118 0.92620 0.91963 0.97017 1.20649 0.99039 1.30685 1.03695 0.92472 1.25644 0.99784 0.95924 0.96077 1.70100 1.34659 1.42946 1.06365 0.85708 0.81012 0.78155 0.78015 1.19121 1.21156 1.20737 1.23061 1.04362 1.03051 0.91365 1.22395 0.98108 0.97958 0.99952 1.23670 0.98481 0.81295 0.97562 0.89249 0.92911 0.92531 0.92103 0.92743 0.89539 0.91998 0.92227 0.88720 0.85995 0.89258 0.88366 0.74925 0.93907 0.92676 0.93146 0.88992 0.89900 0.91681 0.90516 0.87422 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.28 71.98 0.74 -1.02 16 2 C 0.05 0.61 6.66 71.98 0.48 1.09 16 3 O -0.41 -7.17 10.31 -144.35 -1.49 -8.66 16 4 C 0.06 0.68 6.32 71.98 0.45 1.13 16 5 C 0.05 0.63 6.17 71.98 0.44 1.08 16 6 O -0.37 -6.33 10.33 -144.35 -1.49 -7.82 16 7 C 0.07 1.19 4.48 31.25 0.14 1.33 16 8 C 0.09 2.05 7.65 86.42 0.66 2.72 16 9 N -0.62 -17.14 3.62 -841.90 -3.04 -20.18 16 10 C 0.54 19.01 8.12 87.27 0.71 19.72 16 11 O -0.54 -21.27 17.22 -3.22 -0.06 -21.33 16 12 C 0.50 19.89 7.87 87.27 0.69 20.57 16 13 O -0.55 -23.45 15.04 -3.24 -0.05 -23.50 16 14 N -0.67 -27.97 5.37 -464.41 -2.49 -30.46 16 15 C 0.18 7.98 5.57 86.38 0.48 8.46 16 16 C -0.01 -0.31 1.51 -52.92 -0.08 -0.39 16 17 C -0.50 -26.45 8.38 25.60 0.21 -26.24 16 18 H 0.06 2.99 7.81 -2.91 -0.02 2.97 16 19 C 0.03 1.44 5.43 84.65 0.46 1.89 16 20 N -0.90 -51.02 12.72 21.45 0.27 -50.74 16 21 Si 0.94 43.40 29.54 68.60 2.03 45.43 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 23 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 25 C -0.18 -7.35 9.94 30.62 0.30 -7.05 16 26 C -0.15 -6.62 9.26 30.62 0.28 -6.33 16 27 C 0.11 2.12 8.67 86.49 0.75 2.87 16 28 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.12 1.58 7.89 -2.39 -0.02 1.56 16 38 H 0.09 2.28 7.33 -2.39 -0.02 2.26 16 39 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.41 17.17 7.73 -92.70 -0.72 16.45 16 41 H 0.04 2.23 8.09 -2.39 -0.02 2.21 16 42 H 0.06 2.33 8.11 -2.39 -0.02 2.31 16 43 H 0.26 14.10 8.32 -92.71 -0.77 13.33 16 44 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 45 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 46 H 0.06 3.21 8.14 -2.39 -0.02 3.20 16 47 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 48 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -68.27 417.31 0.63 -67.64 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.22 Total: 29.79 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 6.73 Total: 19.84 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -5.26 Total: -101.39 kcal Atomic # 8 Polarization: -58.23 SS G_CDS: -3.08 Total: -61.31 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -68.27 0.63 -67.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326144955.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.475 kcal (2) G-P(sol) polarization free energy of solvation -68.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds