Wall clock time and date at job start Sat Apr 11 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 120.00362 * 2 1 4 4 C 1.52998 * 109.47171 * 270.00421 * 3 2 1 5 5 O 1.42895 * 109.47628 * 64.99784 * 4 3 2 6 6 C 1.42902 * 114.00533 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47068 * 179.97438 * 6 5 4 8 8 C 1.52997 * 117.49892 * 243.74372 * 7 6 5 9 9 C 1.53006 * 117.49386 * 175.08818 * 7 6 5 10 10 C 1.34777 * 119.99777 * 180.02562 * 2 1 3 11 11 O 1.21347 * 119.99915 * 183.63322 * 10 2 1 12 12 C 1.49450 * 119.99923 * 3.63192 * 10 2 1 13 13 O 1.21349 * 120.00488 * 354.15124 * 12 10 2 14 14 N 1.34777 * 120.00100 * 174.14791 * 12 10 2 15 15 C 1.47026 * 125.64533 * 359.95729 * 14 12 10 16 16 C 1.54378 * 107.28756 * 181.12732 * 15 14 12 17 17 C 1.55152 * 102.91806 * 22.13902 * 16 15 14 18 18 O 1.42901 * 111.00225 * 82.64183 * 17 16 15 19 19 C 1.50703 * 111.00348 * 206.45137 * 17 16 15 20 20 H 1.07993 * 119.99657 * 356.82511 * 19 17 16 21 21 C 1.37877 * 119.99858 * 176.54854 * 19 17 16 22 22 N 1.31514 * 119.99980 * 0.27535 * 21 19 17 23 23 Si 1.86799 * 120.00081 * 180.27381 * 21 19 17 24 24 H 1.48509 * 109.46762 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47006 * 119.99582 * 23 21 19 26 26 H 1.48498 * 109.47511 * 240.00072 * 23 21 19 27 27 C 1.47419 * 125.65077 * 180.02562 * 14 12 10 28 28 H 1.08996 * 109.47303 * 263.99867 * 1 2 3 29 29 H 1.09005 * 109.46939 * 23.99472 * 1 2 3 30 30 H 1.09001 * 109.47062 * 143.99059 * 1 2 3 31 31 H 1.09003 * 109.46559 * 30.00148 * 3 2 1 32 32 H 1.08994 * 109.47049 * 150.00194 * 3 2 1 33 33 H 1.08999 * 109.46927 * 185.00127 * 4 3 2 34 34 H 1.09006 * 109.46803 * 304.99737 * 4 3 2 35 35 H 1.08995 * 109.46452 * 300.00213 * 6 5 4 36 36 H 1.08996 * 109.46501 * 59.99573 * 6 5 4 37 37 H 1.08997 * 115.55075 * 29.41805 * 7 6 5 38 38 H 1.09002 * 117.49891 * 0.02562 * 8 7 6 39 39 H 1.08998 * 117.49965 * 145.02447 * 8 7 6 40 40 H 1.08997 * 117.49371 * 214.98349 * 9 7 6 41 41 H 1.09002 * 117.49842 * 359.97438 * 9 7 6 42 42 H 1.08995 * 109.88407 * 300.51260 * 15 14 12 43 43 H 1.09008 * 109.87978 * 61.68182 * 15 14 12 44 44 H 1.08996 * 110.70436 * 263.79724 * 16 15 14 45 45 H 1.08993 * 110.75331 * 140.50887 * 16 15 14 46 46 H 0.96698 * 114.00134 * 183.17635 * 18 17 16 47 47 H 0.97004 * 119.99734 * 179.97438 * 22 21 19 48 48 H 1.08998 * 110.37129 * 37.00308 * 27 14 12 49 49 H 1.09004 * 110.37032 * 274.67402 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 8 1.2062 1.9936 -2.0814 6 6 1.3324 2.4165 -3.4405 7 6 -0.0567 2.6897 -4.0208 8 6 -0.5234 1.8084 -5.1811 9 6 -0.1301 3.2655 -5.4365 10 6 2.1389 -1.1672 -0.0005 11 8 3.3505 -1.1683 0.0661 12 6 1.3938 -2.4601 -0.0831 13 8 0.1810 -2.4653 -0.0426 14 7 2.0689 -3.6205 -0.2026 15 6 3.5313 -3.7585 -0.2644 16 6 3.8438 -5.2614 -0.4289 17 6 2.5245 -5.8275 -1.0173 18 8 2.4686 -5.6309 -2.4316 19 6 2.3600 -7.2849 -0.6706 20 1 3.1376 -7.8019 -0.1280 21 6 1.2144 -7.9566 -1.0412 22 7 0.2676 -7.3270 -1.7020 23 14 1.0072 -9.7611 -0.6048 24 1 2.2057 -10.2322 0.1348 25 1 -0.1974 -9.9291 0.2472 26 1 0.8484 -10.5562 -1.8489 27 6 1.4632 -4.9614 -0.2944 28 1 -0.3634 -0.1074 1.0220 29 1 -0.3633 0.9389 -0.4179 30 1 -0.3633 -0.8313 -0.6042 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1383 0.5138 33 1 3.0733 2.6063 -1.4437 34 1 2.9643 0.9130 -1.9815 35 1 1.9301 3.3270 -3.4836 36 1 1.8207 1.6336 -4.0207 37 1 -0.8092 3.0184 -3.3041 38 1 0.1591 1.0337 -5.5308 39 1 -1.5830 1.5576 -5.2280 40 1 -0.9312 3.9727 -5.6511 41 1 0.8113 3.4501 -5.9542 42 1 3.9203 -3.2040 -1.1183 43 1 3.9781 -3.3854 0.6573 44 1 4.0624 -5.7175 0.5366 45 1 4.6708 -5.4102 -1.1230 46 1 1.6414 -5.9247 -2.8372 47 1 -0.5382 -7.7997 -1.9631 48 1 0.5434 -4.9231 -0.8779 49 1 1.2653 -5.3574 0.7017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326227149.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:36 Heat of formation + Delta-G solvation = -118.253387 kcal Electronic energy + Delta-G solvation = -30807.348699 eV Core-core repulsion = 26543.425494 eV Total energy + Delta-G solvation = -4263.923205 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.49978 -38.87345 -38.31880 -37.23273 -36.87523 -35.46115 -34.11902 -32.21461 -30.55446 -30.21379 -27.91905 -27.18689 -26.64591 -25.57149 -24.14256 -22.74998 -22.63498 -21.21746 -20.77191 -19.65743 -18.83506 -17.28972 -17.24085 -16.88303 -16.47895 -16.36256 -15.90653 -15.57349 -15.18125 -15.08637 -14.82638 -14.51737 -14.28375 -14.11027 -13.52803 -13.12431 -12.97629 -12.86291 -12.77462 -12.67604 -12.28248 -12.23061 -12.18663 -11.82184 -11.77323 -11.64614 -11.48185 -11.24821 -11.07306 -10.91160 -10.70688 -10.59991 -10.55209 -10.49196 -10.46679 -10.19382 -9.72598 -9.38659 -8.93461 -8.70097 -8.66689 -8.40574 -7.84817 -6.30942 -4.40126 1.83662 2.61793 3.18727 3.22571 3.27802 3.31358 3.59666 3.65561 3.81063 4.24972 4.51199 4.60288 4.61641 4.73607 4.90374 4.94696 4.97041 5.03414 5.09278 5.23644 5.34111 5.36053 5.39547 5.48876 5.50311 5.61712 5.64865 5.80575 5.83076 5.83296 5.86549 5.92470 6.07187 6.21547 6.31714 6.45561 6.52441 6.73628 6.82682 6.88118 6.96225 7.17840 7.21987 7.31037 7.71985 7.83566 7.99630 8.09765 8.49777 8.64293 9.28833 9.39388 10.76396 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014138 B = 0.002724 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.017784 B =10275.065578 C =11195.247272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.585 5.585 3 C 0.118 3.882 4 C 0.046 3.954 5 O -0.380 6.380 6 C 0.094 3.906 7 C -0.153 4.153 8 C -0.176 4.176 9 C -0.176 4.176 10 C 0.508 3.492 11 O -0.524 6.524 12 C 0.508 3.492 13 O -0.530 6.530 14 N -0.574 5.574 15 C 0.112 3.888 16 C -0.122 4.122 17 C 0.248 3.752 18 O -0.582 6.582 19 C -0.536 4.536 20 H 0.069 0.931 21 C 0.070 3.930 22 N -0.894 5.894 23 Si 0.905 3.095 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.091 3.909 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.383 0.617 47 H 0.270 0.730 48 H 0.089 0.911 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.142 19.772 -1.326 19.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.319 5.319 3 C -0.005 4.005 4 C -0.032 4.032 5 O -0.300 6.300 6 C 0.017 3.983 7 C -0.171 4.171 8 C -0.212 4.212 9 C -0.213 4.213 10 C 0.292 3.708 11 O -0.400 6.400 12 C 0.291 3.709 13 O -0.410 6.410 14 N -0.306 5.306 15 C -0.010 4.010 16 C -0.160 4.160 17 C 0.208 3.792 18 O -0.391 6.391 19 C -0.574 4.574 20 H 0.087 0.913 21 C -0.133 4.133 22 N -0.533 5.533 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.029 4.029 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.125 0.875 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.131 0.869 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.234 0.766 47 H 0.080 0.920 48 H 0.107 0.893 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.358 20.021 -1.138 20.099 hybrid contribution -0.603 -1.027 -0.024 1.191 sum 0.755 18.994 -1.162 19.044 Atomic orbital electron populations 1.22373 0.77246 1.04692 1.02750 1.47607 1.08524 1.04495 1.71289 1.21593 0.98911 0.85019 0.95003 1.22974 0.86411 0.99536 0.94259 1.87873 1.29469 1.87768 1.24870 1.21979 0.95216 0.98086 0.82997 1.22118 0.98261 1.05298 0.91406 1.23097 1.02469 0.93593 1.02089 1.22980 1.03315 0.97119 0.97868 1.20449 0.87496 0.85445 0.77453 1.90700 1.13577 1.87297 1.48457 1.19548 0.87202 0.84155 0.79992 1.90625 1.13162 1.85987 1.51205 1.48657 1.08897 1.06591 1.66463 1.22133 0.79611 0.97942 1.01358 1.22723 0.99553 0.92552 1.01136 1.19630 0.88186 0.92083 0.79333 1.86106 1.44224 1.86854 1.21944 1.21518 1.03820 0.94500 1.37549 0.91315 1.25094 0.95196 0.99115 0.93898 1.69660 1.08173 1.36998 1.38488 0.86330 0.78224 0.83937 0.78307 1.19554 1.20771 1.20740 1.23479 1.00145 0.77858 1.01457 0.92879 0.91130 0.87454 0.89297 0.88058 0.92243 0.92682 0.93107 0.93217 0.86886 0.88533 0.88458 0.88462 0.88773 0.91537 0.91582 0.90370 0.90559 0.76611 0.91978 0.89315 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.97 9.32 59.85 0.56 1.53 16 2 N -0.59 -8.45 2.84 -182.08 -0.52 -8.97 16 3 C 0.12 1.29 5.81 -4.04 -0.02 1.26 16 4 C 0.05 0.48 6.28 37.16 0.23 0.72 16 5 O -0.38 -4.37 9.28 -35.23 -0.33 -4.70 16 6 C 0.09 0.91 6.22 37.16 0.23 1.14 16 7 C -0.15 -1.39 6.05 -90.62 -0.55 -1.94 16 8 C -0.18 -1.57 10.18 -26.70 -0.27 -1.84 16 9 C -0.18 -1.31 10.25 -26.69 -0.27 -1.59 16 10 C 0.51 8.98 7.69 -11.58 -0.09 8.89 16 11 O -0.52 -9.65 13.72 5.50 0.08 -9.57 16 12 C 0.51 10.41 7.80 -11.59 -0.09 10.32 16 13 O -0.53 -11.47 13.39 5.50 0.07 -11.40 16 14 N -0.57 -12.31 3.33 -171.00 -0.57 -12.88 16 15 C 0.11 2.20 5.49 -3.03 -0.02 2.18 16 16 C -0.12 -2.50 6.13 -24.87 -0.15 -2.65 16 17 C 0.25 6.01 0.88 -89.63 -0.08 5.93 16 18 O -0.58 -14.89 13.17 -35.23 -0.46 -15.35 16 19 C -0.54 -13.78 8.26 -34.44 -0.28 -14.06 16 20 H 0.07 1.74 7.78 -52.49 -0.41 1.33 16 21 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 22 N -0.89 -23.45 10.69 55.43 0.59 -22.85 16 23 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 C 0.09 2.18 5.50 -2.54 -0.01 2.16 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.83 7.25 -51.93 -0.38 0.46 16 30 H 0.11 1.77 5.35 -51.93 -0.28 1.49 16 31 H 0.09 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.10 1.09 7.37 -51.93 -0.38 0.71 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.51 7.87 -51.93 -0.41 0.10 16 37 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.10 0.90 8.03 -51.93 -0.42 0.48 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 1.31 7.72 -51.93 -0.40 0.91 16 43 H 0.07 1.20 7.58 -51.92 -0.39 0.81 16 44 H 0.08 1.50 8.03 -51.93 -0.42 1.08 16 45 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.38 10.02 7.26 45.56 0.33 10.35 16 47 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 48 H 0.09 2.33 7.47 -51.93 -0.39 1.94 16 49 H 0.07 1.62 8.03 -51.93 -0.42 1.21 16 LS Contribution 397.83 15.07 6.00 6.00 Total: -1.00 -29.01 397.83 -8.39 -37.40 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -7.31 Total: 13.46 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: -0.92 Total: 13.77 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.49 Total: -44.71 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -0.64 Total: -41.02 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.01 -8.39 -37.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326227149.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.854 kcal (2) G-P(sol) polarization free energy of solvation -29.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds