Wall clock time and date at job start Sat Apr 11 2020 06:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99820 * 2 1 4 4 H 1.48505 * 109.47173 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47313 * 119.99365 * 3 2 1 6 6 H 1.48498 * 109.47073 * 239.99790 * 3 2 1 7 7 C 1.38806 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00341 * 174.99162 * 7 2 1 9 9 N 1.36941 * 120.00042 * 354.98821 * 7 2 1 10 10 C 1.48290 * 128.21340 * 334.72231 * 9 7 2 11 11 H 1.09004 * 112.20555 * 343.28310 * 10 9 7 12 12 C 1.54217 * 104.45148 * 221.60616 * 10 9 7 13 13 C 1.54315 * 104.78940 * 335.12296 * 12 10 9 14 14 C 1.48296 * 128.20762 * 155.04016 * 9 7 2 15 15 H 1.09000 * 112.21196 * 16.71384 * 14 9 7 16 16 C 1.53697 * 107.27389 * 253.16981 * 14 9 7 17 17 C 1.55170 * 108.08553 * 295.61852 * 16 14 9 18 18 H 1.09000 * 109.36186 * 174.06921 * 17 16 14 19 19 C 1.53003 * 109.47836 * 293.96033 * 17 16 14 20 20 N 1.46506 * 109.47179 * 300.08997 * 19 17 16 21 21 C 1.34774 * 120.00121 * 180.02562 * 20 19 17 22 22 O 1.21272 * 120.00103 * 359.97438 * 21 20 19 23 23 C 1.50706 * 119.99801 * 180.02562 * 21 20 19 24 24 H 1.08998 * 112.50720 * 309.68133 * 23 21 20 25 25 C 1.52888 * 113.16407 * 179.76807 * 23 21 20 26 26 C 1.51424 * 84.73201 * 244.77962 * 25 23 21 27 27 C 1.38953 * 145.52610 * 180.02562 * 26 25 23 28 28 C 1.37972 * 120.32456 * 179.97438 * 27 26 25 29 29 C 1.38249 * 120.17668 * 359.97438 * 28 27 26 30 30 C 1.38177 * 119.74630 * 0.02562 * 29 28 27 31 31 C 1.38236 * 120.12461 * 0.02562 * 30 29 28 32 32 C 1.53147 * 109.68383 * 54.04826 * 17 16 14 33 33 H 0.97001 * 120.00413 * 0.02562 * 1 2 3 34 34 H 1.09003 * 110.51048 * 216.22059 * 12 10 9 35 35 H 1.08998 * 110.31688 * 93.92988 * 12 10 9 36 36 H 1.09001 * 110.38452 * 241.01238 * 13 12 10 37 37 H 1.09001 * 110.47706 * 118.69610 * 13 12 10 38 38 H 1.08999 * 109.57312 * 55.81811 * 16 14 9 39 39 H 1.09009 * 109.56699 * 176.17312 * 16 14 9 40 40 H 1.08994 * 109.47610 * 60.09281 * 19 17 16 41 41 H 1.09004 * 109.47282 * 180.09628 * 19 17 16 42 42 H 0.97001 * 119.99535 * 0.02562 * 20 19 17 43 43 H 1.08996 * 113.98628 * 358.72684 * 25 23 21 44 44 H 1.08999 * 113.98125 * 130.82908 * 25 23 21 45 45 H 1.07997 * 119.83968 * 359.97438 * 27 26 25 46 46 H 1.08000 * 119.91600 * 180.02562 * 28 27 26 47 47 H 1.07991 * 120.13000 * 179.97438 * 29 28 27 48 48 H 1.07995 * 119.93767 * 179.97438 * 30 29 28 49 49 H 1.08997 * 109.57120 * 186.24055 * 32 17 16 50 50 H 1.08992 * 109.57006 * 65.87393 * 32 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0872 -1.2040 -0.0811 9 7 1.3295 -2.3857 0.1047 10 6 0.0005 -2.6289 0.7158 11 1 -0.3122 -1.8084 1.3618 12 6 0.1708 -3.9488 1.4950 13 6 1.3307 -4.6783 0.7853 14 6 1.7495 -3.7295 -0.3613 15 1 2.8189 -3.7788 -0.5666 16 6 0.9065 -4.0666 -1.6014 17 6 -0.5780 -4.1689 -1.1614 18 1 -1.2073 -4.3031 -2.0413 19 6 -0.7511 -5.3661 -0.2245 20 7 -0.3614 -6.5934 -0.9232 21 6 -0.4324 -7.7809 -0.2898 22 8 -0.8185 -7.8335 0.8586 23 6 -0.0309 -9.0433 -1.0085 24 1 -0.5100 -9.1391 -1.9828 25 6 -0.1671 -10.2968 -0.1437 26 6 1.3389 -10.3823 -0.2764 27 6 2.4800 -11.0988 0.0634 28 6 3.7202 -10.6827 -0.3751 29 6 3.8363 -9.5485 -1.1571 30 6 2.7050 -8.8321 -1.4980 31 6 1.4620 -9.2476 -1.0583 32 6 -0.9892 -2.8869 -0.4315 33 1 -0.4851 0.8400 -0.0004 34 1 -0.7409 -4.5439 1.4421 35 1 0.4300 -3.7443 2.5338 36 1 0.9897 -5.6323 0.3831 37 1 2.1620 -4.8325 1.4732 38 1 1.0258 -3.2818 -2.3484 39 1 1.2325 -5.0205 -2.0163 40 1 -0.1213 -5.2331 0.6551 41 1 -1.7943 -5.4389 0.0832 42 1 -0.0522 -6.5512 -1.8416 43 1 -0.5121 -10.0996 0.8712 44 1 -0.7018 -11.1135 -0.6286 45 1 2.3956 -11.9858 0.6737 46 1 4.6027 -11.2448 -0.1074 47 1 4.8074 -9.2233 -1.4995 48 1 2.7921 -7.9455 -2.1084 49 1 -1.9946 -3.0036 -0.0270 50 1 -0.9686 -2.0481 -1.1271 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048559995.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:10 Heat of formation + Delta-G solvation = 145.925630 kcal Electronic energy + Delta-G solvation = -30858.751153 eV Core-core repulsion = 27049.425624 eV Total energy + Delta-G solvation = -3809.325529 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.43985 -40.72510 -38.53448 -35.43612 -34.65274 -32.77397 -31.38091 -30.95142 -30.64278 -29.69507 -27.92146 -26.80142 -25.10948 -23.48155 -23.20862 -22.22159 -21.09986 -20.63491 -19.83129 -19.34118 -18.72105 -17.46187 -16.94520 -16.87697 -16.11389 -15.57721 -15.11362 -14.97547 -14.65724 -14.34258 -14.21789 -13.59270 -13.20810 -13.11632 -12.96105 -12.78022 -12.62728 -12.54966 -12.26077 -12.06740 -11.94058 -11.65258 -11.50439 -11.34954 -11.22940 -11.11923 -10.85185 -10.77240 -10.69500 -10.52409 -10.13686 -9.99205 -9.70082 -9.64559 -9.40509 -9.32358 -9.17929 -8.97495 -8.70710 -8.56443 -8.12437 -6.68059 -5.79861 -3.18307 1.11635 1.21312 2.67861 3.34144 3.37960 3.43260 3.43639 3.62077 3.96858 4.22722 4.30877 4.46468 4.86120 4.87788 4.93664 5.04544 5.24488 5.32293 5.37871 5.43701 5.45682 5.50228 5.53477 5.63628 5.68976 5.79002 5.82496 5.84503 5.93018 5.94118 6.07739 6.13512 6.20659 6.21390 6.32376 6.32869 6.45167 6.46917 6.53498 6.60056 6.66225 6.70339 6.78992 6.79828 6.90378 6.98298 7.09646 7.15740 7.55463 7.61676 7.71356 7.77233 8.26852 8.36188 9.13514 9.74711 10.59729 11.34026 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018999 B = 0.003031 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.382955 B = 9234.863523 C =10066.090202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.003 3.997 3 Si 0.907 3.093 4 H -0.291 1.291 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.229 4.229 8 H 0.069 0.931 9 N -0.582 5.582 10 C 0.187 3.813 11 H 0.094 0.906 12 C -0.173 4.173 13 C -0.161 4.161 14 C 0.150 3.850 15 H 0.062 0.938 16 C -0.121 4.121 17 C -0.086 4.086 18 H 0.050 0.950 19 C 0.001 3.999 20 N -0.716 5.716 21 C 0.522 3.478 22 O -0.540 6.540 23 C -0.066 4.066 24 H 0.115 0.885 25 C -0.060 4.060 26 C -0.118 4.118 27 C -0.102 4.102 28 C -0.115 4.115 29 C -0.119 4.119 30 C -0.080 4.080 31 C -0.125 4.125 32 C -0.108 4.108 33 H 0.254 0.746 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.039 0.961 40 H 0.195 0.805 41 H 0.050 0.950 42 H 0.394 0.606 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.118 0.882 46 H 0.125 0.875 47 H 0.128 0.872 48 H 0.122 0.878 49 H 0.038 0.962 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.338 -20.422 -3.975 20.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.195 4.195 3 Si 0.737 3.263 4 H -0.216 1.216 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.358 4.358 8 H 0.086 0.914 9 N -0.303 5.303 10 C 0.080 3.920 11 H 0.112 0.888 12 C -0.211 4.211 13 C -0.200 4.200 14 C 0.043 3.957 15 H 0.080 0.920 16 C -0.160 4.160 17 C -0.105 4.105 18 H 0.068 0.932 19 C -0.117 4.117 20 N -0.366 5.366 21 C 0.307 3.693 22 O -0.417 6.417 23 C -0.087 4.087 24 H 0.132 0.868 25 C -0.097 4.097 26 C -0.118 4.118 27 C -0.120 4.120 28 C -0.133 4.133 29 C -0.137 4.137 30 C -0.098 4.098 31 C -0.125 4.125 32 C -0.148 4.148 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.210 0.790 41 H 0.068 0.932 42 H 0.228 0.772 43 H 0.131 0.869 44 H 0.116 0.884 45 H 0.136 0.864 46 H 0.142 0.858 47 H 0.146 0.854 48 H 0.140 0.860 49 H 0.057 0.943 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.029 -20.124 -3.160 20.397 hybrid contribution 0.519 0.962 -0.838 1.377 sum 1.548 -19.162 -3.998 19.636 Atomic orbital electron populations 1.69881 1.04959 1.25373 1.54881 1.25025 0.95596 0.97815 1.01079 0.86295 0.78677 0.83314 0.77968 1.21649 1.21134 1.21083 1.18853 0.89883 0.82145 1.44894 0.91350 1.45052 1.18344 1.02068 1.64871 1.21181 0.86322 0.92554 0.91903 0.88823 1.23468 0.97995 0.99888 0.99757 1.23392 0.97863 0.99756 0.98952 1.21512 0.95971 0.87121 0.91137 0.92017 1.22502 0.95080 0.99009 0.99451 1.21626 0.96741 0.95010 0.97122 0.93194 1.25279 1.02820 0.81702 1.01898 1.46351 1.66205 1.07086 1.16942 1.20004 0.77952 0.84474 0.86902 1.90679 1.47078 1.86657 1.17301 1.21346 0.91864 0.94602 1.00923 0.86763 1.21735 0.90596 0.95227 1.02148 1.22340 0.95665 0.96179 0.97642 1.20525 0.91136 0.99947 1.00405 1.20990 0.96952 0.97108 0.98220 1.21028 0.98077 0.95607 0.98947 1.20252 0.90158 0.99713 0.99696 1.21226 0.93633 0.97788 0.99867 1.22028 0.97261 0.95462 1.00072 0.93639 0.89385 0.92797 0.88787 0.93159 0.91721 0.94251 0.79032 0.93224 0.77213 0.86920 0.88441 0.86443 0.85751 0.85396 0.85993 0.94317 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.13 10.33 55.49 0.57 -24.56 16 2 C 0.00 0.08 5.43 -17.43 -0.09 -0.01 16 3 Si 0.91 21.45 29.56 -169.99 -5.02 16.43 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.23 -6.15 10.34 -15.06 -0.16 -6.30 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.58 -14.07 2.78 -153.00 -0.43 -14.49 16 10 C 0.19 4.22 3.07 -65.94 -0.20 4.02 16 11 H 0.09 2.42 6.94 -51.93 -0.36 2.06 16 12 C -0.17 -3.33 5.70 -25.41 -0.14 -3.48 16 13 C -0.16 -2.96 5.72 -25.20 -0.14 -3.10 16 14 C 0.15 3.01 4.28 -65.73 -0.28 2.73 16 15 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 16 C -0.12 -2.13 5.42 -25.22 -0.14 -2.27 16 17 C -0.09 -1.48 2.80 -89.39 -0.25 -1.73 16 18 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 19 C 0.00 0.02 2.68 -4.04 -0.01 0.01 16 20 N -0.72 -9.62 4.39 -60.29 -0.26 -9.89 16 21 C 0.52 7.31 7.08 -10.98 -0.08 7.23 16 22 O -0.54 -9.47 15.66 5.56 0.09 -9.38 16 23 C -0.07 -0.71 4.15 -96.58 -0.40 -1.11 16 24 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 25 C -0.06 -0.60 7.91 -27.58 -0.22 -0.82 16 26 C -0.12 -1.31 7.32 -107.59 -0.79 -2.10 16 27 C -0.10 -1.03 10.05 -39.41 -0.40 -1.42 16 28 C -0.11 -1.07 10.03 -39.67 -0.40 -1.47 16 29 C -0.12 -1.15 10.06 -39.60 -0.40 -1.55 16 30 C -0.08 -0.86 10.04 -39.60 -0.40 -1.26 16 31 C -0.12 -1.42 7.05 -104.55 -0.74 -2.16 16 32 C -0.11 -2.24 5.19 -26.29 -0.14 -2.38 16 33 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.09 1.59 4.83 -51.93 -0.25 1.34 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.60 3.96 -51.93 -0.21 1.40 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.04 0.57 6.76 -51.92 -0.35 0.22 16 40 H 0.19 3.33 1.12 -165.91 -0.19 3.15 16 41 H 0.05 0.83 8.00 -51.93 -0.42 0.42 16 42 H 0.39 4.48 7.33 -40.82 -0.30 4.18 16 43 H 0.11 1.29 7.02 -51.93 -0.36 0.93 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 46 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 48 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 49 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 50 H 0.09 2.08 7.36 -51.93 -0.38 1.70 16 LS Contribution 375.19 15.07 5.65 5.65 Total: -1.00 -30.41 375.19 -12.20 -42.61 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -7.43 Total: 10.78 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -5.37 Total: -17.16 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.12 Total: -48.93 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.41 -12.20 -42.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048559995.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.537 kcal (2) G-P(sol) polarization free energy of solvation -30.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds