Wall clock time and date at job start Sat Apr 11 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99820 * 2 1 4 4 H 1.48505 * 109.47173 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47313 * 119.99365 * 3 2 1 6 6 H 1.48498 * 109.47073 * 239.99790 * 3 2 1 7 7 C 1.38806 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00341 * 174.99162 * 7 2 1 9 9 N 1.36941 * 120.00042 * 354.98821 * 7 2 1 10 10 C 1.48290 * 128.21340 * 334.72231 * 9 7 2 11 11 H 1.09004 * 112.20555 * 343.28310 * 10 9 7 12 12 C 1.54217 * 104.45148 * 221.60616 * 10 9 7 13 13 C 1.54315 * 104.78940 * 335.12296 * 12 10 9 14 14 C 1.48296 * 128.20762 * 155.04016 * 9 7 2 15 15 H 1.09000 * 112.21196 * 16.71384 * 14 9 7 16 16 C 1.53697 * 107.27389 * 253.16981 * 14 9 7 17 17 C 1.55170 * 108.08553 * 295.61852 * 16 14 9 18 18 H 1.09000 * 109.36186 * 174.06921 * 17 16 14 19 19 C 1.53003 * 109.47836 * 293.96033 * 17 16 14 20 20 N 1.46506 * 109.47179 * 300.08997 * 19 17 16 21 21 C 1.34774 * 120.00121 * 180.02562 * 20 19 17 22 22 O 1.21272 * 120.00103 * 359.97438 * 21 20 19 23 23 C 1.50706 * 119.99801 * 180.02562 * 21 20 19 24 24 H 1.08998 * 112.50720 * 309.68133 * 23 21 20 25 25 C 1.52888 * 113.16407 * 179.76807 * 23 21 20 26 26 C 1.51424 * 84.73201 * 244.77962 * 25 23 21 27 27 C 1.38953 * 145.52610 * 180.02562 * 26 25 23 28 28 C 1.37972 * 120.32456 * 179.97438 * 27 26 25 29 29 C 1.38249 * 120.17668 * 359.97438 * 28 27 26 30 30 C 1.38177 * 119.74630 * 0.02562 * 29 28 27 31 31 C 1.38236 * 120.12461 * 0.02562 * 30 29 28 32 32 C 1.53147 * 109.68383 * 54.04826 * 17 16 14 33 33 H 0.97001 * 120.00413 * 0.02562 * 1 2 3 34 34 H 1.09003 * 110.51048 * 216.22059 * 12 10 9 35 35 H 1.08998 * 110.31688 * 93.92988 * 12 10 9 36 36 H 1.09001 * 110.38452 * 241.01238 * 13 12 10 37 37 H 1.09001 * 110.47706 * 118.69610 * 13 12 10 38 38 H 1.08999 * 109.57312 * 55.81811 * 16 14 9 39 39 H 1.09009 * 109.56699 * 176.17312 * 16 14 9 40 40 H 1.08994 * 109.47610 * 60.09281 * 19 17 16 41 41 H 1.09004 * 109.47282 * 180.09628 * 19 17 16 42 42 H 0.97001 * 119.99535 * 0.02562 * 20 19 17 43 43 H 1.08996 * 113.98628 * 358.72684 * 25 23 21 44 44 H 1.08999 * 113.98125 * 130.82908 * 25 23 21 45 45 H 1.07997 * 119.83968 * 359.97438 * 27 26 25 46 46 H 1.08000 * 119.91600 * 180.02562 * 28 27 26 47 47 H 1.07991 * 120.13000 * 179.97438 * 29 28 27 48 48 H 1.07995 * 119.93767 * 179.97438 * 30 29 28 49 49 H 1.08997 * 109.57120 * 186.24055 * 32 17 16 50 50 H 1.08992 * 109.57006 * 65.87393 * 32 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0872 -1.2040 -0.0811 9 7 1.3295 -2.3857 0.1047 10 6 0.0005 -2.6289 0.7158 11 1 -0.3122 -1.8084 1.3618 12 6 0.1708 -3.9488 1.4950 13 6 1.3307 -4.6783 0.7853 14 6 1.7495 -3.7295 -0.3613 15 1 2.8189 -3.7788 -0.5666 16 6 0.9065 -4.0666 -1.6014 17 6 -0.5780 -4.1689 -1.1614 18 1 -1.2073 -4.3031 -2.0413 19 6 -0.7511 -5.3661 -0.2245 20 7 -0.3614 -6.5934 -0.9232 21 6 -0.4324 -7.7809 -0.2898 22 8 -0.8185 -7.8335 0.8586 23 6 -0.0309 -9.0433 -1.0085 24 1 -0.5100 -9.1391 -1.9828 25 6 -0.1671 -10.2968 -0.1437 26 6 1.3389 -10.3823 -0.2764 27 6 2.4800 -11.0988 0.0634 28 6 3.7202 -10.6827 -0.3751 29 6 3.8363 -9.5485 -1.1571 30 6 2.7050 -8.8321 -1.4980 31 6 1.4620 -9.2476 -1.0583 32 6 -0.9892 -2.8869 -0.4315 33 1 -0.4851 0.8400 -0.0004 34 1 -0.7409 -4.5439 1.4421 35 1 0.4300 -3.7443 2.5338 36 1 0.9897 -5.6323 0.3831 37 1 2.1620 -4.8325 1.4732 38 1 1.0258 -3.2818 -2.3484 39 1 1.2325 -5.0205 -2.0163 40 1 -0.1213 -5.2331 0.6551 41 1 -1.7943 -5.4389 0.0832 42 1 -0.0522 -6.5512 -1.8416 43 1 -0.5121 -10.0996 0.8712 44 1 -0.7018 -11.1135 -0.6286 45 1 2.3956 -11.9858 0.6737 46 1 4.6027 -11.2448 -0.1074 47 1 4.8074 -9.2233 -1.4995 48 1 2.7921 -7.9455 -2.1084 49 1 -1.9946 -3.0036 -0.0270 50 1 -0.9686 -2.0481 -1.1271 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048559995.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:09 Heat of formation + Delta-G solvation = 130.604981 kcal Electronic energy + Delta-G solvation = -30859.415506 eV Core-core repulsion = 27049.425624 eV Total energy + Delta-G solvation = -3809.989882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.75550 -41.74794 -39.63000 -36.37925 -35.96024 -34.51504 -32.90827 -32.32091 -31.70134 -31.37408 -28.95289 -28.08052 -26.26851 -25.05184 -24.77197 -23.11732 -22.15662 -21.96983 -21.09620 -20.76669 -20.25433 -18.79359 -18.31655 -17.69072 -17.50612 -16.88361 -16.39619 -16.07908 -15.90482 -15.80787 -15.22105 -14.92054 -14.53870 -14.44915 -14.19781 -13.93202 -13.89153 -13.66175 -13.51167 -13.32008 -13.14787 -13.04705 -12.92501 -12.83351 -12.80526 -12.67406 -12.50012 -12.28503 -11.99053 -11.87476 -11.54671 -11.44343 -11.29017 -11.01640 -10.96912 -10.78077 -10.77434 -10.47663 -9.72289 -9.50158 -9.44184 -8.60421 -7.84691 -5.23459 0.37471 0.47787 1.47223 1.48549 1.54652 1.62838 2.28240 2.51147 2.86673 3.18680 3.33961 3.48318 3.54234 3.60908 3.90613 3.92703 3.98647 4.08908 4.24132 4.24553 4.26090 4.28840 4.33373 4.39870 4.56632 4.60887 4.68775 4.72303 4.73956 4.80970 4.86259 4.90810 4.99784 5.01457 5.04199 5.08926 5.11156 5.18549 5.20871 5.30694 5.38857 5.50493 5.51386 5.55173 5.58334 5.62030 5.62496 5.77137 5.78222 5.94089 6.09863 6.31940 6.62930 7.11941 7.29862 7.76741 8.63063 9.27645 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018999 B = 0.003031 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.382955 B = 9234.863523 C =10066.090202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.048 4.048 3 Si 0.967 3.033 4 H -0.295 1.295 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.242 4.242 8 H 0.067 0.933 9 N -0.605 5.605 10 C 0.183 3.817 11 H 0.050 0.950 12 C -0.164 4.164 13 C -0.148 4.148 14 C 0.143 3.857 15 H 0.061 0.939 16 C -0.112 4.112 17 C -0.075 4.075 18 H 0.069 0.931 19 C 0.014 3.986 20 N -0.707 5.707 21 C 0.521 3.479 22 O -0.577 6.577 23 C -0.058 4.058 24 H 0.145 0.855 25 C -0.057 4.057 26 C -0.137 4.137 27 C -0.114 4.114 28 C -0.118 4.118 29 C -0.127 4.127 30 C -0.094 4.094 31 C -0.141 4.141 32 C -0.101 4.101 33 H 0.247 0.753 34 H 0.106 0.894 35 H 0.047 0.953 36 H 0.114 0.886 37 H 0.049 0.951 38 H 0.041 0.959 39 H 0.080 0.920 40 H 0.181 0.819 41 H 0.046 0.954 42 H 0.408 0.592 43 H 0.094 0.906 44 H 0.125 0.875 45 H 0.133 0.867 46 H 0.148 0.852 47 H 0.147 0.853 48 H 0.132 0.868 49 H 0.046 0.954 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.152 -22.934 -5.165 23.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.243 4.243 3 Si 0.796 3.204 4 H -0.222 1.222 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.371 4.371 8 H 0.084 0.916 9 N -0.327 5.327 10 C 0.076 3.924 11 H 0.068 0.932 12 C -0.202 4.202 13 C -0.186 4.186 14 C 0.037 3.963 15 H 0.080 0.920 16 C -0.151 4.151 17 C -0.094 4.094 18 H 0.088 0.912 19 C -0.106 4.106 20 N -0.358 5.358 21 C 0.308 3.692 22 O -0.457 6.457 23 C -0.079 4.079 24 H 0.162 0.838 25 C -0.094 4.094 26 C -0.137 4.137 27 C -0.132 4.132 28 C -0.136 4.136 29 C -0.144 4.144 30 C -0.112 4.112 31 C -0.142 4.142 32 C -0.141 4.141 33 H 0.056 0.944 34 H 0.123 0.877 35 H 0.066 0.934 36 H 0.132 0.868 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.196 0.804 41 H 0.065 0.935 42 H 0.244 0.756 43 H 0.112 0.888 44 H 0.143 0.857 45 H 0.151 0.849 46 H 0.165 0.835 47 H 0.165 0.835 48 H 0.150 0.850 49 H 0.065 0.935 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.865 -22.668 -4.379 23.162 hybrid contribution 0.318 1.695 -0.431 1.778 sum 2.183 -20.973 -4.810 21.628 Atomic orbital electron populations 1.70061 1.05999 1.25282 1.56000 1.25703 0.96398 1.00593 1.01631 0.85346 0.77392 0.79648 0.77991 1.22163 1.20902 1.20393 1.19129 0.90161 0.83616 1.44213 0.91570 1.45252 1.18776 1.02830 1.65848 1.21095 0.86314 0.92666 0.92317 0.93157 1.23422 0.99350 0.98454 0.98986 1.23316 0.97259 0.99879 0.98146 1.21731 0.96478 0.85395 0.92711 0.92036 1.22379 0.94851 1.00200 0.97684 1.21477 0.96729 0.93614 0.97585 0.91236 1.24818 1.02400 0.82241 1.01151 1.46169 1.65996 1.06176 1.17478 1.20571 0.76836 0.85286 0.86480 1.90671 1.48698 1.87254 1.19127 1.21358 0.91882 0.92726 1.01939 0.83780 1.21762 0.90439 0.95844 1.01364 1.22597 0.96406 0.96652 0.98055 1.20834 0.91236 1.00557 1.00604 1.21342 0.97598 0.97111 0.97570 1.21361 0.98754 0.95588 0.98728 1.20515 0.90304 1.00352 1.00058 1.21364 0.93953 0.98248 1.00630 1.21825 0.97353 0.96058 0.98863 0.94434 0.87687 0.93382 0.86823 0.93220 0.94058 0.90199 0.80397 0.93537 0.75576 0.88752 0.85720 0.84945 0.83470 0.83515 0.85018 0.93520 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.49 10.33 21.65 0.22 -53.27 16 2 C -0.05 -2.64 5.43 84.86 0.46 -2.18 16 3 Si 0.97 45.11 29.56 68.60 2.03 47.14 16 4 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.24 -13.27 10.34 84.03 0.87 -12.41 16 8 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 9 N -0.60 -29.78 2.78 -637.96 -1.77 -31.55 16 10 C 0.18 8.46 3.07 45.29 0.14 8.60 16 11 H 0.05 2.74 6.94 -2.39 -0.02 2.72 16 12 C -0.16 -6.29 5.70 31.45 0.18 -6.12 16 13 C -0.15 -5.22 5.72 31.59 0.18 -5.04 16 14 C 0.14 5.62 4.28 45.43 0.19 5.82 16 15 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 16 C -0.11 -3.75 5.42 31.57 0.17 -3.57 16 17 C -0.08 -2.46 2.80 -10.00 -0.03 -2.49 16 18 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 19 C 0.01 0.41 2.68 86.38 0.23 0.64 16 20 N -0.71 -16.79 4.39 -463.05 -2.03 -18.82 16 21 C 0.52 13.28 7.08 87.66 0.62 13.90 16 22 O -0.58 -19.35 15.66 -3.01 -0.05 -19.40 16 23 C -0.06 -1.08 4.15 -14.66 -0.06 -1.14 16 24 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 25 C -0.06 -1.02 7.91 30.04 0.24 -0.78 16 26 C -0.14 -2.75 7.32 -21.79 -0.16 -2.91 16 27 C -0.11 -2.05 10.05 22.38 0.22 -1.82 16 28 C -0.12 -1.90 10.03 22.21 0.22 -1.68 16 29 C -0.13 -2.12 10.06 22.26 0.22 -1.89 16 30 C -0.09 -1.77 10.04 22.25 0.22 -1.55 16 31 C -0.14 -2.85 7.05 -19.82 -0.14 -2.99 16 32 C -0.10 -4.23 5.19 30.88 0.16 -4.07 16 33 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 34 H 0.11 3.70 4.83 -2.39 -0.01 3.69 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.11 3.59 3.96 -2.39 -0.01 3.58 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.08 2.04 6.76 -2.38 -0.02 2.02 16 40 H 0.18 5.86 1.12 -109.45 -0.12 5.74 16 41 H 0.05 1.46 8.00 -2.38 -0.02 1.44 16 42 H 0.41 7.61 7.33 -92.71 -0.68 6.93 16 43 H 0.09 2.06 7.02 -2.39 -0.02 2.04 16 44 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 46 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 47 H 0.15 1.78 8.06 -2.92 -0.02 1.76 16 48 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 49 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.05 2.36 7.36 -2.39 -0.02 2.35 16 Total: -1.00 -68.30 375.19 2.52 -65.78 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.17 Total: 31.79 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: 3.95 Total: -21.67 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -3.58 Total: -103.64 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.05 Total: -19.40 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -68.30 2.52 -65.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048559995.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.384 kcal (2) G-P(sol) polarization free energy of solvation -68.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds