Wall clock time and date at job start Sat Apr 11 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99869 * 2 1 4 4 H 1.48500 * 109.46904 * 240.00197 * 3 2 1 5 5 H 1.48502 * 109.47442 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47070 * 120.00258 * 3 2 1 7 7 C 1.38811 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99814 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.46752 * 125.33480 * 0.02898 * 9 7 2 11 11 C 1.53993 * 106.67398 * 198.42645 * 10 9 7 12 12 H 1.08998 * 112.25042 * 209.66518 * 11 10 9 13 13 C 1.53665 * 109.90248 * 82.58004 * 11 10 9 14 14 N 1.46665 * 107.97274 * 232.81358 * 13 11 10 15 15 C 1.34770 * 125.33783 * 179.29105 * 14 13 11 16 16 O 1.21283 * 119.99962 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.00061 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47067 * 180.02562 * 17 15 14 19 19 H 1.08999 * 115.54955 * 29.27670 * 18 17 15 20 20 C 1.53000 * 117.49575 * 243.60524 * 18 17 15 21 21 C 1.53003 * 117.49570 * 174.98443 * 18 17 15 22 22 H 1.08992 * 117.49876 * 0.02562 * 21 18 17 23 23 C 1.50700 * 117.49885 * 214.97823 * 21 18 17 24 24 C 1.38238 * 119.99939 * 299.72995 * 23 21 18 25 25 C 1.38233 * 120.00066 * 179.74436 * 24 23 21 26 26 C 1.38237 * 119.99905 * 0.54930 * 25 24 23 27 27 C 1.38239 * 119.99401 * 359.70396 * 26 25 24 28 28 C 1.38227 * 120.00815 * 0.02562 * 27 26 25 29 29 C 1.47726 * 109.64467 * 359.95594 * 14 13 11 30 30 C 1.53987 * 106.19183 * 17.33541 * 29 14 13 31 31 H 1.09002 * 112.80289 * 209.96054 * 30 29 14 32 32 C 1.46665 * 125.32878 * 179.97438 * 9 7 2 33 33 H 0.96996 * 120.00019 * 359.97438 * 1 2 3 34 34 H 1.08997 * 110.02007 * 317.73019 * 10 9 7 35 35 H 1.08994 * 110.01989 * 79.08129 * 10 9 7 36 36 H 1.08996 * 109.77251 * 352.44559 * 13 11 10 37 37 H 1.09005 * 109.76795 * 113.18943 * 13 11 10 38 38 H 1.09001 * 109.47268 * 300.00386 * 17 15 14 39 39 H 1.08998 * 109.46866 * 59.99819 * 17 15 14 40 40 H 1.08994 * 117.50112 * 0.02562 * 20 18 17 41 41 H 1.09003 * 117.49495 * 145.01860 * 20 18 17 42 42 H 1.08004 * 119.99963 * 359.97438 * 24 23 21 43 43 H 1.07997 * 120.00319 * 180.27299 * 25 24 23 44 44 H 1.07990 * 120.00252 * 179.72492 * 26 25 24 45 45 H 1.08005 * 119.99685 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.00950 * 179.97438 * 28 27 26 47 47 H 1.09007 * 109.75464 * 258.45784 * 29 14 13 48 48 H 1.09000 * 110.75394 * 136.75726 * 29 14 13 49 49 H 1.09002 * 109.76444 * 59.69371 * 32 9 7 50 50 H 1.08990 * 109.76909 * 298.94226 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1356 -2.5244 -0.0006 11 6 -0.4455 -3.9590 0.4657 12 1 -1.3722 -4.3410 0.0374 13 6 -0.4103 -4.0293 2.0003 14 7 0.4960 -5.1172 2.3828 15 6 0.7942 -5.4750 3.6475 16 8 0.2973 -4.8790 4.5795 17 6 1.7452 -6.6157 3.9034 18 6 1.9096 -6.8140 5.4116 19 1 1.0492 -6.5335 6.0192 20 6 3.3001 -6.5838 6.0069 21 6 2.7479 -8.0050 5.8803 22 1 3.1825 -8.6470 5.1142 23 6 2.3208 -8.7011 7.1469 24 6 2.2717 -8.0006 8.3376 25 6 1.8749 -8.6377 9.4984 26 6 1.5382 -9.9782 9.4707 27 6 1.5924 -10.6799 8.2809 28 6 1.9838 -10.0414 7.1190 29 6 1.0473 -5.7541 1.1693 30 6 0.8072 -4.7617 0.0166 31 1 0.6738 -5.2561 -0.9456 32 6 1.9377 -3.7208 -0.0016 33 1 -0.4850 0.8400 0.0004 34 1 -0.5776 -1.8045 0.6882 35 1 -0.5251 -2.3660 -1.0062 36 1 -0.0443 -3.0854 2.4044 37 1 -1.4107 -4.2311 2.3832 38 1 1.3468 -7.5277 3.4587 39 1 2.7139 -6.3879 3.4588 40 1 4.0976 -6.2906 5.3243 41 1 3.3544 -6.1521 7.0064 42 1 2.5397 -6.9546 8.3603 43 1 1.8322 -8.0894 10.4279 44 1 1.2325 -10.4770 10.3784 45 1 1.3297 -11.7273 8.2592 46 1 2.0266 -10.5897 6.1895 47 1 0.5218 -6.6886 0.9725 48 1 2.1148 -5.9426 1.2831 49 1 2.5626 -3.8401 0.8835 50 1 2.5419 -3.8483 -0.8997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048824119.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:13 Heat of formation + Delta-G solvation = 43.684239 kcal Electronic energy + Delta-G solvation = -28889.382578 eV Core-core repulsion = 25075.623530 eV Total energy + Delta-G solvation = -3813.759048 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.28311 -39.75754 -38.32843 -36.98818 -34.88159 -32.29054 -31.47973 -31.14962 -30.34026 -29.68833 -28.73750 -25.49120 -25.36142 -24.04257 -23.06151 -22.61939 -21.23682 -20.34491 -20.07231 -19.35768 -19.02680 -17.54475 -16.99458 -16.50719 -16.01453 -15.79540 -15.15967 -15.08503 -14.77212 -14.63414 -14.28844 -13.95843 -13.69681 -13.57381 -13.16367 -13.06101 -13.02235 -12.80223 -12.38852 -12.14146 -12.01382 -11.90724 -11.64426 -11.59812 -11.34324 -11.33180 -11.19699 -10.96679 -10.80597 -10.69472 -10.41454 -10.18829 -10.15228 -9.99406 -9.86793 -9.63182 -9.56850 -9.14956 -8.72847 -8.64069 -8.29257 -6.85054 -5.69765 -3.08407 1.09115 1.17512 2.87346 3.19092 3.40246 3.42039 3.44605 3.45768 3.87352 4.29190 4.47123 4.53390 4.59390 4.70793 4.75542 4.79687 4.88094 4.90973 4.94183 5.12011 5.16110 5.25462 5.34174 5.35201 5.42878 5.46659 5.50772 5.54517 5.63278 5.66863 5.74163 5.76053 5.79815 5.82775 5.90099 5.93562 6.15127 6.18688 6.25983 6.29048 6.32511 6.40943 6.42767 6.59172 6.65861 6.73585 6.77226 6.80984 7.43603 7.60378 7.80223 7.81185 8.31131 8.42661 9.20901 9.81475 10.44322 11.36816 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019130 B = 0.002130 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.346841 B =13144.137799 C =13755.894816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.226 4.226 8 H 0.076 0.924 9 N -0.600 5.600 10 C 0.170 3.830 11 C -0.122 4.122 12 H 0.087 0.913 13 C 0.124 3.876 14 N -0.610 5.610 15 C 0.526 3.474 16 O -0.543 6.543 17 C -0.106 4.106 18 C -0.118 4.118 19 H 0.120 0.880 20 C -0.168 4.168 21 C -0.120 4.120 22 H 0.113 0.887 23 C -0.046 4.046 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.129 4.129 27 C -0.119 4.119 28 C -0.116 4.116 29 C 0.111 3.889 30 C -0.111 4.111 31 H 0.096 0.904 32 C 0.145 3.855 33 H 0.253 0.747 34 H 0.097 0.903 35 H 0.020 0.980 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.022 0.978 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.273 -21.953 10.985 24.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.354 4.354 8 H 0.094 0.906 9 N -0.326 5.326 10 C 0.044 3.956 11 C -0.143 4.143 12 H 0.105 0.895 13 C 0.002 3.998 14 N -0.344 5.344 15 C 0.315 3.685 16 O -0.421 6.421 17 C -0.146 4.146 18 C -0.137 4.137 19 H 0.138 0.862 20 C -0.204 4.204 21 C -0.138 4.138 22 H 0.131 0.869 23 C -0.046 4.046 24 C -0.138 4.138 25 C -0.135 4.135 26 C -0.147 4.147 27 C -0.137 4.137 28 C -0.134 4.134 29 C -0.013 4.013 30 C -0.130 4.130 31 H 0.114 0.886 32 C 0.019 3.981 33 H 0.064 0.936 34 H 0.115 0.885 35 H 0.038 0.962 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.081 0.919 48 H 0.091 0.909 49 H 0.040 0.960 50 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 2.972 -21.409 11.556 24.510 hybrid contribution 0.516 0.803 -0.192 0.973 sum 3.487 -20.606 11.364 23.789 Atomic orbital electron populations 1.69843 1.04856 1.25094 1.57245 1.24790 0.95757 0.97745 1.02185 0.86157 0.78438 0.83055 0.77873 1.21208 1.21541 1.21154 1.18988 0.90438 0.82371 1.43612 0.90569 1.44193 1.01612 0.99842 1.86958 1.21472 0.84823 0.89625 0.99639 1.23176 0.97061 1.00521 0.93498 0.89512 1.21797 0.92540 0.90525 0.94957 1.48523 1.45849 1.34915 1.05067 1.20101 0.82192 0.84945 0.81267 1.90687 1.53897 1.55417 1.42092 1.21203 1.00011 0.97750 0.95603 1.22216 0.96299 1.00096 0.95051 0.86162 1.23243 0.97028 0.97175 1.03003 1.21206 1.04927 0.90637 0.97023 0.86854 1.19179 0.98341 0.93637 0.93408 1.21135 1.00082 1.00278 0.92276 1.21146 0.99224 0.94915 0.98202 1.21140 1.00840 0.94680 0.98036 1.21122 0.99964 0.99841 0.92796 1.20965 0.99895 0.94133 0.98360 1.22186 0.98626 0.95730 0.84715 1.22839 0.97260 0.95734 0.97172 0.88614 1.21136 0.93385 0.85784 0.97834 0.93606 0.88543 0.96247 0.90317 0.92454 0.88671 0.88741 0.88192 0.88295 0.85779 0.86104 0.86272 0.86147 0.86066 0.91885 0.90872 0.96039 0.96054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.70 10.16 55.49 0.56 -26.13 16 2 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.23 -6.24 10.25 -15.06 -0.15 -6.39 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -14.95 3.38 -171.88 -0.58 -15.53 16 10 C 0.17 3.96 4.87 -3.39 -0.02 3.95 16 11 C -0.12 -2.17 4.05 -88.48 -0.36 -2.53 16 12 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 13 C 0.12 2.28 6.28 -3.61 -0.02 2.26 16 14 N -0.61 -9.79 3.33 -171.55 -0.57 -10.37 16 15 C 0.53 8.50 7.84 -10.99 -0.09 8.41 16 16 O -0.54 -10.91 15.87 5.55 0.09 -10.82 16 17 C -0.11 -1.19 5.02 -27.88 -0.14 -1.33 16 18 C -0.12 -1.35 5.05 -90.62 -0.46 -1.81 16 19 H 0.12 1.67 7.30 -51.93 -0.38 1.29 16 20 C -0.17 -1.67 9.51 -26.73 -0.25 -1.93 16 21 C -0.12 -1.12 5.76 -91.77 -0.53 -1.65 16 22 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 23 C -0.05 -0.45 5.61 -104.62 -0.59 -1.04 16 24 C -0.12 -1.19 9.30 -39.58 -0.37 -1.56 16 25 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 26 C -0.13 -1.07 10.05 -39.58 -0.40 -1.47 16 27 C -0.12 -0.99 10.05 -39.59 -0.40 -1.39 16 28 C -0.12 -1.04 9.74 -39.59 -0.39 -1.42 16 29 C 0.11 1.43 5.83 -2.86 -0.02 1.41 16 30 C -0.11 -1.73 4.03 -88.47 -0.36 -2.08 16 31 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 32 C 0.14 2.87 6.64 -3.60 -0.02 2.84 16 33 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.10 2.57 5.86 -51.93 -0.30 2.27 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 1.77 7.52 -51.93 -0.39 1.38 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.09 0.94 7.61 -51.93 -0.40 0.55 16 40 H 0.10 0.92 8.03 -51.93 -0.42 0.50 16 41 H 0.10 0.96 6.17 -51.93 -0.32 0.64 16 42 H 0.12 1.16 6.02 -52.48 -0.32 0.84 16 43 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 44 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 45 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 46 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.07 0.83 7.29 -51.93 -0.38 0.45 16 49 H 0.02 0.44 7.47 -51.93 -0.39 0.05 16 50 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 395.81 15.07 5.96 5.96 Total: -1.00 -32.78 395.81 -12.51 -45.30 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.91 Total: 1.99 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -5.05 Total: -7.53 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.59 Total: -52.03 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.78 -12.51 -45.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048824119.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.981 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds