Wall clock time and date at job start Sat Apr 11 2020 06:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00231 * 2 1 4 4 H 1.48497 * 109.46872 * 270.00358 * 3 2 1 5 5 H 1.48504 * 109.46687 * 30.00256 * 3 2 1 6 6 H 1.48503 * 109.47295 * 149.99912 * 3 2 1 7 7 C 1.38819 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00425 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99710 * 359.97438 * 7 2 1 10 10 C 1.47172 * 125.25485 * 359.17502 * 9 7 2 11 11 C 1.53694 * 107.73137 * 180.36621 * 10 9 7 12 12 H 1.09000 * 113.05544 * 254.94690 * 11 10 9 13 13 C 1.53726 * 109.34051 * 128.69983 * 11 10 9 14 14 N 1.46670 * 107.94302 * 266.25439 * 13 11 10 15 15 C 1.34774 * 125.33940 * 180.52615 * 14 13 11 16 16 O 1.21553 * 120.00049 * 5.48114 * 15 14 13 17 17 C 1.47845 * 119.99795 * 185.48772 * 15 14 13 18 18 C 1.39580 * 120.13966 * 204.81634 * 17 15 14 19 19 C 1.37962 * 119.84835 * 180.02562 * 18 17 15 20 20 C 1.38358 * 120.14595 * 359.97438 * 19 18 17 21 21 C 1.50705 * 119.85216 * 179.97438 * 20 19 18 22 22 C 1.53773 * 113.61437 * 217.49786 * 21 20 19 23 23 C 1.53785 * 87.08228 * 220.02258 * 22 21 20 24 24 C 1.53779 * 87.07918 * 25.43115 * 23 22 21 25 25 C 1.38356 * 120.29242 * 0.02562 * 20 19 18 26 26 C 1.37951 * 120.14673 * 0.02562 * 25 20 19 27 27 C 1.46777 * 109.32008 * 0.78179 * 14 13 11 28 28 C 1.54144 * 106.53518 * 341.12766 * 27 14 13 29 29 H 1.09000 * 113.21840 * 265.98268 * 28 27 14 30 30 C 1.46743 * 125.32899 * 180.02562 * 9 7 2 31 31 H 0.96993 * 119.99698 * 359.97438 * 1 2 3 32 32 H 1.08998 * 108.94628 * 61.35112 * 10 9 7 33 33 H 1.08998 * 110.84367 * 300.47041 * 10 9 7 34 34 H 1.08997 * 109.77376 * 146.63118 * 13 11 10 35 35 H 1.09005 * 109.77054 * 25.87054 * 13 11 10 36 36 H 1.07996 * 120.07474 * 0.27598 * 18 17 15 37 37 H 1.07999 * 119.92313 * 180.02562 * 19 18 17 38 38 H 1.09001 * 112.84933 * 348.80762 * 21 20 19 39 39 H 1.09001 * 113.61680 * 334.56824 * 22 21 20 40 40 H 1.09000 * 113.61605 * 105.47221 * 22 21 20 41 41 H 1.09002 * 113.60807 * 270.88221 * 23 22 21 42 42 H 1.08995 * 113.61292 * 139.98774 * 23 22 21 43 43 H 1.08996 * 113.61335 * 220.01768 * 24 23 22 44 44 H 1.09003 * 113.68707 * 89.12701 * 24 23 22 45 45 H 1.08007 * 119.92562 * 180.02562 * 25 20 19 46 46 H 1.08004 * 120.07578 * 179.97438 * 26 25 20 47 47 H 1.09006 * 110.02229 * 100.53871 * 27 14 13 48 48 H 1.08995 * 110.03026 * 221.94999 * 27 14 13 49 49 H 1.08998 * 110.00849 * 42.37410 * 30 9 7 50 50 H 1.09004 * 110.00693 * 281.00837 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1398 -2.5229 0.0173 11 6 -0.4718 -4.0236 0.0198 12 1 -0.8302 -4.3831 -0.9448 13 6 -1.4533 -4.3260 1.1636 14 7 -0.6706 -4.7385 2.3334 15 6 -1.1829 -5.0946 3.5280 16 8 -2.3867 -5.1858 3.6703 17 6 -0.2808 -5.3741 4.6655 18 6 -0.6992 -6.2088 5.7031 19 6 0.1473 -6.4651 6.7620 20 6 1.4086 -5.8973 6.7964 21 6 2.3276 -6.1813 7.9565 22 6 3.1699 -4.9686 8.3863 23 6 4.3393 -5.9485 8.5792 24 6 3.6482 -6.8537 7.5458 25 6 1.8293 -5.0691 5.7711 26 6 0.9923 -4.8037 4.7071 27 6 0.7584 -4.6969 2.0009 28 6 0.8513 -4.7083 0.4623 29 1 0.9784 -5.7080 0.0468 30 6 1.9381 -3.7216 -0.0005 31 1 -0.4849 0.8400 0.0004 32 1 -0.5490 -2.0565 -0.8788 33 1 -0.5620 -2.0506 0.9043 34 1 -2.1270 -5.1303 0.8684 35 1 -2.0287 -3.4314 1.4019 36 1 -1.6817 -6.6561 5.6752 37 1 -0.1750 -7.1110 7.5652 38 1 1.8229 -6.6795 8.7842 39 1 3.3335 -4.2454 7.5874 40 1 2.8296 -4.5071 9.3133 41 1 4.3853 -6.3822 9.5782 42 1 5.2986 -5.5550 8.2429 43 1 3.6941 -7.9140 7.7942 44 1 3.9419 -6.6469 6.5167 45 1 2.8153 -4.6293 5.8039 46 1 1.3218 -4.1567 3.9075 47 1 1.2076 -3.7865 2.3978 48 1 1.2627 -5.5719 2.4108 49 1 2.7814 -3.7447 0.6897 50 1 2.2715 -3.9788 -1.0059 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048849127.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:17 Heat of formation + Delta-G solvation = 48.607867 kcal Electronic energy + Delta-G solvation = -29823.761193 eV Core-core repulsion = 26010.215650 eV Total energy + Delta-G solvation = -3813.545544 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.66773 -39.82475 -38.41025 -37.29916 -34.98329 -32.47037 -31.69085 -31.02390 -30.02864 -29.45222 -26.48283 -25.89171 -25.62250 -25.23733 -23.38329 -22.83448 -21.79699 -20.13120 -19.86658 -19.32911 -19.27714 -17.34346 -16.76750 -16.70878 -16.12232 -15.70393 -15.43200 -14.88075 -14.51936 -14.40136 -14.29043 -13.89410 -13.50962 -13.45785 -13.39297 -13.05116 -12.83053 -12.71466 -12.67051 -12.23734 -12.07076 -11.98112 -11.86588 -11.54687 -11.50255 -11.11542 -10.92197 -10.84875 -10.73968 -10.70460 -10.49862 -10.42665 -10.11667 -10.09632 -9.87929 -9.72795 -9.63729 -9.01654 -8.76215 -8.63939 -8.30472 -6.87753 -5.75736 -3.09820 0.85996 1.32984 2.91564 3.21742 3.37509 3.42462 3.44795 3.77387 4.31581 4.34173 4.44965 4.46073 4.57623 4.67934 4.75981 4.83329 4.86961 4.94510 5.06631 5.21337 5.27695 5.33623 5.41542 5.47154 5.47567 5.50690 5.57171 5.61504 5.63433 5.67309 5.69143 5.79062 5.82572 5.86593 5.93900 5.97025 6.12533 6.15489 6.24634 6.25308 6.31976 6.36686 6.50360 6.53126 6.54976 6.62602 6.77877 6.84147 7.52421 7.54391 7.74952 7.78190 8.21759 8.34514 9.17380 9.78424 10.41928 11.35690 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.003220 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.136180 B = 8692.897378 C =10252.461137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.184 3.816 11 C -0.123 4.123 12 H 0.092 0.908 13 C 0.120 3.880 14 N -0.602 5.602 15 C 0.570 3.430 16 O -0.546 6.546 17 C -0.129 4.129 18 C -0.062 4.062 19 C -0.129 4.129 20 C -0.052 4.052 21 C -0.077 4.077 22 C -0.135 4.135 23 C -0.144 4.144 24 C -0.130 4.130 25 C -0.124 4.124 26 C -0.092 4.092 27 C 0.109 3.891 28 C -0.113 4.113 29 H 0.089 0.911 30 C 0.147 3.853 31 H 0.253 0.747 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.128 0.872 46 H 0.145 0.855 47 H 0.082 0.918 48 H 0.069 0.931 49 H 0.037 0.963 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.309 -15.291 13.271 20.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.360 4.360 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.060 3.940 11 C -0.143 4.143 12 H 0.110 0.890 13 C -0.002 4.002 14 N -0.334 5.334 15 C 0.360 3.640 16 O -0.425 6.425 17 C -0.132 4.132 18 C -0.081 4.081 19 C -0.147 4.147 20 C -0.052 4.052 21 C -0.095 4.095 22 C -0.173 4.173 23 C -0.181 4.181 24 C -0.168 4.168 25 C -0.142 4.142 26 C -0.110 4.110 27 C -0.013 4.013 28 C -0.133 4.133 29 H 0.108 0.892 30 C 0.020 3.980 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.104 0.896 45 H 0.145 0.855 46 H 0.162 0.838 47 H 0.100 0.900 48 H 0.088 0.912 49 H 0.055 0.945 50 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 4.579 -15.113 13.403 20.713 hybrid contribution 0.383 0.973 -0.045 1.047 sum 4.962 -14.140 13.358 20.075 Atomic orbital electron populations 1.69949 1.04878 1.25143 1.56736 1.24801 0.95696 0.97700 1.02030 0.86134 0.78571 0.83532 0.77591 1.21571 1.21690 1.20696 1.19025 0.90418 0.82305 1.44246 0.90378 1.44349 1.01442 0.99891 1.87313 1.21221 0.84467 0.86718 1.01611 1.23168 0.93747 1.00485 0.96901 0.89016 1.21855 0.94035 0.99765 0.84535 1.48126 1.08310 1.65485 1.11429 1.17962 0.87553 0.77064 0.81468 1.90748 1.15071 1.53396 1.83287 1.19892 0.95048 1.01930 0.96353 1.21192 0.99408 0.95475 0.91982 1.20958 0.93706 1.01272 0.98716 1.19927 0.94281 0.95729 0.95269 1.21600 0.93749 0.98369 0.95799 1.23058 0.95971 0.96260 1.01982 1.22839 0.98064 0.97748 0.99464 1.22984 0.94837 0.99124 0.99838 1.20958 1.00204 0.99213 0.93847 1.22022 0.92393 0.97825 0.98738 1.22412 0.81561 1.01426 0.95935 1.22978 0.97339 0.99225 0.93708 0.89227 1.21140 0.93589 0.85687 0.97589 0.93665 0.93459 0.93155 0.92130 0.90770 0.85098 0.85704 0.88486 0.89411 0.91280 0.90215 0.91233 0.91352 0.89645 0.85459 0.83798 0.89971 0.91232 0.94526 0.96059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.43 10.25 55.49 0.57 -25.86 16 2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 3 Si 0.91 21.66 29.55 -169.99 -5.02 16.63 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.23 -6.18 10.25 -15.06 -0.15 -6.34 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -14.47 3.39 -171.51 -0.58 -15.06 16 10 C 0.18 4.26 4.77 -3.31 -0.02 4.24 16 11 C -0.12 -2.18 4.01 -88.61 -0.36 -2.53 16 12 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 13 C 0.12 2.10 6.24 -3.57 -0.02 2.08 16 14 N -0.60 -10.29 3.31 -173.29 -0.57 -10.87 16 15 C 0.57 10.14 7.63 -12.33 -0.09 10.05 16 16 O -0.55 -11.24 16.93 5.32 0.09 -11.15 16 17 C -0.13 -1.93 5.67 -104.97 -0.60 -2.53 16 18 C -0.06 -0.81 9.59 -39.18 -0.38 -1.18 16 19 C -0.13 -1.39 9.69 -39.64 -0.38 -1.77 16 20 C -0.05 -0.54 5.30 -104.53 -0.55 -1.09 16 21 C -0.08 -0.62 3.98 -90.96 -0.36 -0.98 16 22 C -0.14 -1.04 7.45 -25.92 -0.19 -1.23 16 23 C -0.14 -0.95 8.08 -25.92 -0.21 -1.16 16 24 C -0.13 -0.94 7.55 -25.92 -0.20 -1.14 16 25 C -0.12 -1.40 8.58 -39.64 -0.34 -1.75 16 26 C -0.09 -1.23 8.18 -39.19 -0.32 -1.55 16 27 C 0.11 1.68 4.34 -3.29 -0.01 1.67 16 28 C -0.11 -1.78 4.14 -88.27 -0.37 -2.15 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 30 C 0.15 2.76 6.41 -3.43 -0.02 2.74 16 31 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.05 1.23 7.40 -51.93 -0.38 0.84 16 33 H 0.05 1.32 6.58 -51.93 -0.34 0.97 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.43 7.44 -51.93 -0.39 1.04 16 36 H 0.13 1.67 7.85 -52.49 -0.41 1.26 16 37 H 0.13 1.04 8.05 -52.49 -0.42 0.62 16 38 H 0.10 0.69 8.09 -51.93 -0.42 0.27 16 39 H 0.09 0.71 6.30 -51.93 -0.33 0.39 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.66 7.72 -51.93 -0.40 0.26 16 45 H 0.13 1.23 6.64 -52.48 -0.35 0.88 16 46 H 0.14 2.01 4.42 -52.48 -0.23 1.78 16 47 H 0.08 1.41 6.02 -51.93 -0.31 1.10 16 48 H 0.07 0.92 7.14 -51.93 -0.37 0.55 16 49 H 0.04 0.66 7.97 -51.93 -0.41 0.24 16 50 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -31.35 384.96 -12.09 -43.44 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.70 Total: 1.93 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -4.67 Total: -4.87 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.59 Total: -51.79 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.35 -12.09 -43.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048849127.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.046 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds