Wall clock time and date at job start Sat Apr 11 2020 06:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99538 * 2 1 4 4 H 1.48498 * 109.47157 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47553 * 299.99967 * 3 2 1 6 6 H 1.48509 * 109.47061 * 60.00154 * 3 2 1 7 7 C 1.38807 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00036 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00354 * 0.02562 * 7 2 1 10 10 C 1.46773 * 125.34167 * 179.97438 * 9 7 2 11 11 C 1.53969 * 106.63028 * 161.51835 * 10 9 7 12 12 H 1.09004 * 113.01620 * 265.72208 * 11 10 9 13 13 C 1.54097 * 109.44872 * 138.17748 * 11 10 9 14 14 N 1.46749 * 106.63196 * 278.64317 * 13 11 10 15 15 C 1.34772 * 125.32828 * 161.58872 * 14 13 11 16 16 O 1.21271 * 120.00340 * 179.69406 * 15 14 13 17 17 C 1.50709 * 119.99719 * 359.68580 * 15 14 13 18 18 C 1.53003 * 109.46806 * 185.28449 * 17 15 14 19 19 C 1.50701 * 115.54907 * 65.54205 * 18 17 15 20 20 C 1.38237 * 119.99834 * 209.77336 * 19 18 17 21 21 C 1.38228 * 119.99962 * 179.97438 * 20 19 18 22 22 C 1.38232 * 120.00176 * 0.28914 * 21 20 19 23 23 C 1.38238 * 119.99598 * 359.50063 * 22 21 20 24 24 C 1.38228 * 120.00042 * 0.45055 * 23 22 21 25 25 C 1.53001 * 117.51455 * 211.24539 * 18 17 15 26 26 C 1.53004 * 117.49578 * 279.87336 * 18 17 15 27 27 C 1.46635 * 109.34127 * 341.31589 * 14 13 11 28 28 C 1.53692 * 108.01008 * 1.06973 * 27 14 13 29 29 H 1.09004 * 112.55725 * 254.08445 * 28 27 14 30 30 C 1.46676 * 125.33536 * 0.04091 * 9 7 2 31 31 H 0.97000 * 120.00552 * 359.97438 * 1 2 3 32 32 H 1.08997 * 110.02823 * 42.23080 * 10 9 7 33 33 H 1.08996 * 110.02855 * 280.80899 * 10 9 7 34 34 H 1.08996 * 110.14177 * 159.30286 * 13 11 10 35 35 H 1.08999 * 109.95845 * 37.87913 * 13 11 10 36 36 H 1.08997 * 109.46931 * 65.28669 * 17 15 14 37 37 H 1.08995 * 109.47104 * 305.28049 * 17 15 14 38 38 H 1.08001 * 119.99710 * 359.97438 * 20 19 18 39 39 H 1.08004 * 119.99878 * 180.02562 * 21 20 19 40 40 H 1.07995 * 120.00473 * 179.72543 * 22 21 20 41 41 H 1.08008 * 120.00036 * 180.27622 * 23 22 21 42 42 H 1.08007 * 120.00131 * 179.82799 * 24 23 22 43 43 H 1.09002 * 117.49347 * 214.96492 * 25 18 17 44 44 H 1.08997 * 117.49799 * 359.97438 * 25 18 17 45 45 H 1.09000 * 117.49901 * 359.97438 * 26 18 17 46 46 H 1.09003 * 117.49640 * 145.00219 * 26 18 17 47 47 H 1.09002 * 109.76214 * 120.70661 * 27 14 13 48 48 H 1.08997 * 109.76621 * 241.42353 * 27 14 13 49 49 H 1.08994 * 109.77156 * 60.88992 * 30 9 7 50 50 H 1.08997 * 109.76843 * 300.12900 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.9382 -3.7219 0.0005 11 6 0.8505 -4.7062 0.4682 12 1 0.8861 -4.9030 1.5397 13 6 0.9090 -5.9826 -0.3931 14 7 0.1884 -5.6839 -1.6361 15 6 0.2955 -6.3795 -2.7855 16 8 -0.3518 -6.0497 -3.7565 17 6 1.2200 -7.5672 -2.8641 18 6 1.2550 -8.0919 -4.3009 19 6 1.8561 -7.1580 -5.3195 20 6 1.4238 -7.1959 -6.6319 21 6 1.9748 -6.3389 -7.5661 22 6 2.9623 -5.4481 -7.1892 23 6 3.3915 -5.4072 -5.8758 24 6 2.8398 -6.2635 -4.9414 25 6 1.4774 -9.5925 -4.5001 26 6 0.0975 -8.9831 -4.7558 27 6 -0.6715 -4.5142 -1.4299 28 6 -0.4700 -4.0248 0.0130 29 1 -1.3139 -4.2678 0.6587 30 6 -0.1346 -2.5245 -0.0009 31 1 -0.4851 0.8400 0.0004 32 1 2.7831 -3.7447 0.6888 33 1 2.2685 -3.9810 -1.0053 34 1 0.4268 -6.8095 0.1281 35 1 1.9460 -6.2348 -0.6147 36 1 0.8601 -8.3523 -2.1992 37 1 2.2234 -7.2671 -2.5624 38 1 0.6555 -7.8952 -6.9274 39 1 1.6367 -6.3683 -8.5915 40 1 3.3959 -4.7816 -7.9200 41 1 4.1600 -4.7081 -5.5803 42 1 3.1771 -6.2335 -3.9158 43 1 2.0585 -9.9042 -5.3680 44 1 1.5993 -10.2061 -3.6075 45 1 -0.6887 -9.1959 -4.0314 46 1 -0.2292 -8.8940 -5.7919 47 1 -0.3941 -3.7250 -2.1287 48 1 -1.7144 -4.7918 -1.5826 49 1 -0.5473 -2.0626 -0.8977 50 1 -0.5505 -2.0457 0.8856 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048854047.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:20 Heat of formation + Delta-G solvation = 51.728995 kcal Electronic energy + Delta-G solvation = -30228.371160 eV Core-core repulsion = 26414.960958 eV Total energy + Delta-G solvation = -3813.410201 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.52631 -39.62714 -38.09510 -36.87139 -34.91894 -32.27241 -31.24820 -30.49087 -30.47762 -29.68962 -28.96078 -25.49178 -25.39021 -23.44289 -22.94056 -22.69543 -21.97887 -20.18874 -19.95676 -19.35733 -18.75731 -17.31614 -17.09235 -16.54838 -15.88587 -15.53648 -15.15816 -14.80023 -14.74553 -14.57974 -14.33989 -13.81943 -13.66149 -13.47375 -13.21428 -12.96992 -12.87293 -12.62334 -12.31504 -12.06436 -11.96909 -11.78059 -11.68492 -11.66350 -11.41259 -11.13674 -11.02018 -10.89662 -10.82725 -10.63422 -10.36656 -10.18496 -10.09642 -10.00124 -9.90665 -9.67412 -9.51992 -8.84319 -8.61908 -8.48084 -8.29064 -6.83893 -5.73004 -3.06468 1.40412 1.47939 2.88713 3.15839 3.39452 3.44940 3.47436 3.60717 4.02659 4.40522 4.47967 4.53000 4.60083 4.64038 4.78621 4.94644 5.03118 5.04540 5.13631 5.17991 5.25281 5.39453 5.41462 5.43154 5.47087 5.49213 5.54984 5.63175 5.69013 5.73147 5.73473 5.78303 5.84806 5.94384 5.94895 6.07920 6.09952 6.14777 6.29245 6.35131 6.53964 6.57514 6.58381 6.62507 6.67019 6.70814 6.83076 7.06258 7.54447 7.55934 7.80058 7.81047 8.25458 8.44505 9.21374 9.81903 10.45654 11.38674 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012617 B = 0.003284 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.782192 B = 8523.803165 C = 9896.663179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.110 4.110 12 H 0.098 0.902 13 C 0.110 3.890 14 N -0.612 5.612 15 C 0.525 3.475 16 O -0.529 6.529 17 C -0.099 4.099 18 C -0.070 4.070 19 C -0.025 4.025 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.129 4.129 23 C -0.113 4.113 24 C -0.114 4.114 25 C -0.165 4.165 26 C -0.157 4.157 27 C 0.121 3.879 28 C -0.123 4.123 29 H 0.087 0.913 30 C 0.187 3.813 31 H 0.252 0.748 32 H 0.034 0.966 33 H 0.017 0.983 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.073 0.927 48 H 0.057 0.943 49 H 0.049 0.951 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.998 -20.189 -6.943 21.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.019 3.981 11 C -0.130 4.130 12 H 0.116 0.884 13 C -0.013 4.013 14 N -0.346 5.346 15 C 0.313 3.687 16 O -0.405 6.405 17 C -0.139 4.139 18 C -0.071 4.071 19 C -0.025 4.025 20 C -0.134 4.134 21 C -0.137 4.137 22 C -0.147 4.147 23 C -0.131 4.131 24 C -0.132 4.132 25 C -0.202 4.202 26 C -0.194 4.194 27 C -0.002 4.002 28 C -0.142 4.142 29 H 0.105 0.895 30 C 0.062 3.938 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.034 0.966 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.117 0.883 47 H 0.092 0.908 48 H 0.076 0.924 49 H 0.067 0.933 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.609 -19.813 -7.553 21.364 hybrid contribution 0.396 1.071 0.148 1.151 sum 3.005 -18.742 -7.405 20.375 Atomic orbital electron populations 1.69960 1.04862 1.24981 1.57090 1.24794 0.95726 0.97690 1.02125 0.86047 0.78711 0.83769 0.77252 1.20520 1.21732 1.21735 1.19079 0.90461 0.82337 1.43819 0.90400 1.44218 1.01466 0.99958 1.87180 1.21231 0.93814 0.85898 0.97155 1.22961 0.97226 0.93715 0.99072 0.88374 1.21962 0.96480 0.97734 0.85149 1.48293 1.44435 1.30704 1.11159 1.20081 0.83288 0.83879 0.81455 1.90709 1.46019 1.68801 1.34985 1.21202 1.00492 0.96737 0.95461 1.19700 1.03546 0.90553 0.93282 1.18823 0.95104 0.95663 0.92887 1.20937 0.99770 0.99861 0.92843 1.21059 0.97061 0.96294 0.99253 1.21099 0.98065 0.99187 0.96318 1.21122 1.00074 0.98579 0.93366 1.20925 0.96870 0.95942 0.99438 1.23169 1.00085 0.93415 1.03534 1.23029 0.91394 1.02205 1.02775 1.21924 0.93471 0.87327 0.97432 1.23137 0.96954 1.00075 0.94083 0.89452 1.21032 0.84588 0.86626 1.01532 0.93749 0.94758 0.96579 0.91981 0.91114 0.88681 0.88599 0.86278 0.86369 0.86363 0.86090 0.86469 0.88467 0.88371 0.88601 0.88324 0.90822 0.92448 0.93312 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.90 10.25 55.49 0.57 -26.33 16 2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.23 -6.33 10.25 -15.06 -0.15 -6.49 16 8 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 9 N -0.60 -15.08 3.38 -171.84 -0.58 -15.66 16 10 C 0.15 2.88 6.49 -3.39 -0.02 2.86 16 11 C -0.11 -1.73 4.16 -88.26 -0.37 -2.10 16 12 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 13 C 0.11 1.41 5.77 -3.33 -0.02 1.39 16 14 N -0.61 -9.55 3.30 -172.28 -0.57 -10.12 16 15 C 0.52 8.22 7.57 -10.98 -0.08 8.13 16 16 O -0.53 -10.25 15.69 5.57 0.09 -10.17 16 17 C -0.10 -1.12 4.21 -27.88 -0.12 -1.24 16 18 C -0.07 -0.80 1.48 -155.66 -0.23 -1.03 16 19 C -0.02 -0.33 4.60 -104.62 -0.48 -0.81 16 20 C -0.12 -1.47 9.35 -39.59 -0.37 -1.84 16 21 C -0.12 -1.43 10.05 -39.59 -0.40 -1.83 16 22 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 23 C -0.11 -1.49 10.05 -39.59 -0.40 -1.89 16 24 C -0.11 -1.55 9.24 -39.59 -0.37 -1.92 16 25 C -0.17 -1.42 9.89 -26.73 -0.26 -1.68 16 26 C -0.16 -1.61 9.48 -26.73 -0.25 -1.86 16 27 C 0.12 2.16 6.21 -3.61 -0.02 2.14 16 28 C -0.12 -2.18 4.01 -88.60 -0.36 -2.54 16 29 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 30 C 0.19 4.42 4.77 -3.57 -0.02 4.41 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.02 0.34 7.72 -51.93 -0.40 -0.06 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.79 7.27 -51.93 -0.38 0.42 16 36 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 37 H 0.10 0.98 6.29 -51.93 -0.33 0.65 16 38 H 0.12 1.31 5.95 -52.49 -0.31 1.00 16 39 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 40 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 42 H 0.12 1.49 6.55 -52.48 -0.34 1.14 16 43 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.10 0.99 6.11 -51.93 -0.32 0.67 16 47 H 0.07 1.58 7.29 -51.93 -0.38 1.21 16 48 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 49 H 0.05 1.30 6.73 -51.93 -0.35 0.95 16 50 H 0.05 1.26 7.37 -51.93 -0.38 0.87 16 LS Contribution 391.45 15.07 5.90 5.90 Total: -1.00 -33.23 391.45 -11.84 -45.07 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.81 Total: 2.76 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -4.41 Total: -8.56 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.58 Total: -52.11 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.23 -11.84 -45.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048854047.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.794 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds