Wall clock time and date at job start Sat Apr 11 2020 06:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00211 * 2 1 4 4 H 1.48500 * 109.46972 * 269.99600 * 3 2 1 5 5 H 1.48501 * 109.46880 * 29.99454 * 3 2 1 6 6 H 1.48494 * 109.47214 * 149.99325 * 3 2 1 7 7 C 1.38807 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00366 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00021 * 0.02562 * 7 2 1 10 10 C 1.46660 * 125.34002 * 179.97438 * 9 7 2 11 11 C 1.53665 * 107.97553 * 179.32610 * 10 9 7 12 12 H 1.08999 * 112.77778 * 219.38694 * 11 10 9 13 13 C 1.53981 * 109.29863 * 93.06656 * 11 10 9 14 14 N 1.46759 * 106.68209 * 221.16799 * 13 11 10 15 15 C 1.34777 * 125.33957 * 198.42874 * 14 13 11 16 16 O 1.21274 * 120.00275 * 175.27340 * 15 14 13 17 17 C 1.50701 * 119.99649 * 355.27330 * 15 14 13 18 18 C 1.52999 * 115.55122 * 280.23728 * 17 15 14 19 19 C 1.50697 * 109.47016 * 294.69124 * 18 17 15 20 20 C 1.38235 * 120.00478 * 266.95220 * 19 18 17 21 21 C 1.38233 * 120.00547 * 179.78583 * 20 19 18 22 22 C 1.38240 * 119.99829 * 0.44432 * 21 20 19 23 23 C 1.38236 * 119.99657 * 359.81103 * 22 21 20 24 24 C 1.38229 * 120.00252 * 359.97438 * 23 22 21 25 25 C 1.52998 * 117.49742 * 134.52745 * 17 15 14 26 26 C 1.52995 * 60.00138 * 252.51124 * 25 17 15 27 27 C 1.46664 * 109.32551 * 18.44623 * 14 13 11 28 28 C 1.53668 * 107.98404 * 359.28659 * 27 14 13 29 29 H 1.09000 * 112.77343 * 220.11707 * 28 27 14 30 30 C 1.46765 * 125.33287 * 0.03943 * 9 7 2 31 31 H 0.97000 * 119.99629 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.76506 * 59.69328 * 10 9 7 33 33 H 1.09007 * 109.76591 * 298.96018 * 10 9 7 34 34 H 1.08997 * 110.01695 * 101.85818 * 13 11 10 35 35 H 1.09006 * 110.05305 * 340.49200 * 13 11 10 36 36 H 1.08999 * 109.47244 * 54.69088 * 18 17 15 37 37 H 1.08993 * 109.47033 * 174.69342 * 18 17 15 38 38 H 1.08004 * 119.99574 * 0.02562 * 20 19 18 39 39 H 1.07994 * 120.00126 * 180.27476 * 21 20 19 40 40 H 1.07992 * 119.99920 * 179.83090 * 22 21 20 41 41 H 1.08002 * 119.99861 * 180.02562 * 23 22 21 42 42 H 1.08004 * 120.00209 * 180.02562 * 24 23 22 43 43 H 1.09003 * 117.50192 * 359.97438 * 25 17 15 44 44 H 1.09003 * 117.49792 * 145.02156 * 25 17 15 45 45 H 1.09005 * 117.49757 * 252.51347 * 26 25 17 46 46 H 1.08995 * 117.50380 * 107.49123 * 26 25 17 47 47 H 1.08997 * 109.76443 * 118.92516 * 27 14 13 48 48 H 1.09003 * 109.76561 * 239.64913 * 27 14 13 49 49 H 1.09002 * 110.01643 * 317.71469 * 30 9 7 50 50 H 1.08997 * 110.01793 * 79.10994 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.9376 -3.7208 0.0005 11 6 0.8072 -4.7616 0.0177 12 1 1.0297 -5.6158 0.6573 13 6 0.4700 -5.1706 -1.4280 14 7 -0.9923 -5.2640 -1.5092 15 6 -1.6798 -5.9180 -2.4664 16 8 -2.8871 -6.0059 -2.3931 17 6 -0.9481 -6.5401 -3.6277 18 6 -0.5411 -5.5762 -4.7440 19 6 -1.7770 -5.0229 -5.4053 20 6 -2.2966 -5.6416 -6.5270 21 6 -3.4328 -5.1367 -7.1311 22 6 -4.0444 -4.0077 -6.6188 23 6 -3.5218 -3.3860 -5.5002 24 6 -2.3881 -3.8934 -4.8936 25 6 -1.3421 -7.9625 -4.0307 26 6 -0.0080 -7.7089 -3.3260 27 6 -1.5885 -4.5337 -0.3856 28 6 -0.4460 -3.9589 0.4662 29 1 -0.6390 -4.0332 1.5364 30 6 -0.1357 -2.5245 -0.0008 31 1 -0.4849 0.8401 -0.0004 32 1 2.5618 -3.8398 0.8861 33 1 2.5428 -3.8486 -0.8970 34 1 0.9189 -6.1372 -1.6566 35 1 0.8350 -4.4159 -2.1247 36 1 0.0427 -4.7578 -4.3225 37 1 0.0590 -6.1079 -5.4823 38 1 -1.8169 -6.5217 -6.9292 39 1 -3.8412 -5.6227 -8.0048 40 1 -4.9305 -3.6117 -7.0923 41 1 -3.9998 -2.5042 -5.0997 42 1 -1.9801 -3.4079 -4.0194 43 1 -2.1303 -8.4485 -3.4556 44 1 -1.3116 -8.2117 -5.0914 45 1 0.9003 -7.7913 -3.9231 46 1 0.0814 -8.0279 -2.2876 47 1 -2.2116 -3.7227 -0.7623 48 1 -2.1918 -5.2128 0.2168 49 1 -0.5783 -1.8043 0.6874 50 1 -0.5242 -2.3671 -1.0070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048867822.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:23 Heat of formation + Delta-G solvation = 46.723832 kcal Electronic energy + Delta-G solvation = -30633.720855 eV Core-core repulsion = 26820.093614 eV Total energy + Delta-G solvation = -3813.627242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.59562 -39.27516 -38.37584 -36.62129 -34.94681 -32.33910 -32.26062 -30.80313 -30.35650 -29.48265 -27.35090 -25.80908 -25.48714 -23.85700 -22.70165 -22.40873 -21.93731 -21.07384 -20.19325 -19.29330 -18.60531 -17.06220 -16.78022 -16.32769 -16.14594 -15.52624 -15.13730 -15.04462 -14.81665 -14.55385 -14.06458 -13.76528 -13.57296 -13.34303 -13.28287 -13.12807 -12.71438 -12.64059 -12.34501 -12.16304 -12.01423 -11.80061 -11.74273 -11.63856 -11.36641 -11.31129 -10.94972 -10.93030 -10.83427 -10.63075 -10.45101 -10.16291 -10.09222 -10.07710 -9.84853 -9.58250 -9.47717 -8.81537 -8.66075 -8.62902 -8.31661 -6.87822 -5.71593 -3.11011 1.41981 1.50632 2.78755 3.13920 3.37564 3.42785 3.44729 3.56522 3.87925 4.44276 4.46488 4.55659 4.65683 4.81636 4.84632 4.94434 4.98290 5.07607 5.14524 5.19652 5.25904 5.43736 5.45554 5.48210 5.56066 5.56832 5.60237 5.65188 5.66965 5.73195 5.77772 5.79380 5.88026 5.96320 5.99278 6.10707 6.13634 6.19533 6.26223 6.34027 6.51794 6.52078 6.56400 6.61303 6.65259 6.70565 6.82388 7.09292 7.46952 7.59869 7.78212 7.79840 8.28901 8.39560 9.18542 9.79284 10.42156 11.34480 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.003669 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.035314 B = 7630.087708 C = 8971.040728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.146 3.854 11 C -0.110 4.110 12 H 0.088 0.912 13 C 0.112 3.888 14 N -0.604 5.604 15 C 0.564 3.436 16 O -0.537 6.537 17 C -0.141 4.141 18 C -0.037 4.037 19 C -0.077 4.077 20 C -0.114 4.114 21 C -0.124 4.124 22 C -0.125 4.125 23 C -0.114 4.114 24 C -0.100 4.100 25 C -0.143 4.143 26 C -0.164 4.164 27 C 0.120 3.880 28 C -0.121 4.121 29 H 0.092 0.908 30 C 0.171 3.829 31 H 0.252 0.748 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.071 0.929 48 H 0.058 0.942 49 H 0.093 0.907 50 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.235 -15.063 -9.682 18.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.020 3.980 11 C -0.129 4.129 12 H 0.106 0.894 13 C -0.011 4.011 14 N -0.337 5.337 15 C 0.351 3.649 16 O -0.414 6.414 17 C -0.144 4.144 18 C -0.075 4.075 19 C -0.077 4.077 20 C -0.132 4.132 21 C -0.142 4.142 22 C -0.143 4.143 23 C -0.132 4.132 24 C -0.118 4.118 25 C -0.181 4.181 26 C -0.201 4.201 27 C -0.002 4.002 28 C -0.141 4.141 29 H 0.110 0.890 30 C 0.046 3.954 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.117 0.883 47 H 0.089 0.911 48 H 0.076 0.924 49 H 0.111 0.889 50 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -2.968 -14.903 -9.694 18.024 hybrid contribution 0.454 0.957 0.012 1.060 sum -2.514 -13.945 -9.682 17.162 Atomic orbital electron populations 1.69868 1.04876 1.24943 1.57180 1.24782 0.95702 0.97706 1.02134 0.86106 0.78578 0.83418 0.77582 1.21620 1.21642 1.20667 1.19045 0.90503 0.82343 1.43676 0.90415 1.44242 1.01653 0.99841 1.87041 1.21065 0.93216 0.85571 0.98187 1.22810 0.97160 0.98151 0.94794 0.89411 1.22175 0.79999 1.01065 0.97888 1.48218 1.07691 1.51719 1.26057 1.19015 0.86579 0.77910 0.81375 1.90684 1.13935 1.59801 1.76952 1.21290 1.04870 0.91085 0.97157 1.20062 0.94750 0.97951 0.94717 1.19690 0.96961 0.95437 0.95582 1.20922 0.96704 0.99568 0.95997 1.21046 0.96242 0.96836 1.00103 1.21101 0.99950 0.96366 0.96879 1.21143 0.96167 0.99992 0.95904 1.21086 0.95707 0.95749 0.99213 1.22968 0.98176 0.95412 1.01496 1.23164 0.94668 1.00031 1.02214 1.21755 0.96094 0.95220 0.87155 1.23230 0.92469 0.99338 0.99054 0.89005 1.21518 0.84696 0.89649 0.99494 0.93686 0.95740 0.95742 0.91271 0.90942 0.89839 0.89927 0.86497 0.86434 0.86431 0.86141 0.86296 0.88270 0.88034 0.87714 0.88307 0.91106 0.92368 0.88922 0.96306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.24 10.16 55.49 0.56 -25.68 16 2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 3 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.23 -6.11 10.25 -15.06 -0.15 -6.27 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.59 3.38 -171.86 -0.58 -15.17 16 10 C 0.15 2.80 6.58 -3.61 -0.02 2.77 16 11 C -0.11 -1.73 4.10 -88.47 -0.36 -2.09 16 12 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 13 C 0.11 1.63 5.75 -3.39 -0.02 1.61 16 14 N -0.60 -9.66 3.31 -172.33 -0.57 -10.23 16 15 C 0.56 9.13 6.20 -10.98 -0.07 9.06 16 16 O -0.54 -10.57 17.31 5.56 0.10 -10.48 16 17 C -0.14 -1.75 1.21 -155.66 -0.19 -1.94 16 18 C -0.04 -0.45 5.23 -27.88 -0.15 -0.59 16 19 C -0.08 -1.04 4.96 -104.62 -0.52 -1.56 16 20 C -0.11 -1.35 9.69 -39.58 -0.38 -1.73 16 21 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 22 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 23 C -0.11 -1.60 10.05 -39.59 -0.40 -2.00 16 24 C -0.10 -1.53 9.14 -39.58 -0.36 -1.89 16 25 C -0.14 -1.51 9.87 -26.73 -0.26 -1.77 16 26 C -0.16 -1.57 8.41 -26.73 -0.22 -1.79 16 27 C 0.12 2.05 6.19 -3.61 -0.02 2.03 16 28 C -0.12 -2.15 4.10 -88.45 -0.36 -2.51 16 29 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 30 C 0.17 3.95 4.87 -3.37 -0.02 3.93 16 31 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.46 7.63 -51.93 -0.40 0.06 16 34 H 0.07 0.83 6.14 -51.93 -0.32 0.51 16 35 H 0.07 1.19 7.42 -51.93 -0.39 0.80 16 36 H 0.08 1.08 7.96 -51.93 -0.41 0.66 16 37 H 0.08 0.77 8.01 -51.93 -0.42 0.36 16 38 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.12 2.00 8.06 -52.48 -0.42 1.58 16 43 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.10 0.96 7.76 -51.93 -0.40 0.55 16 47 H 0.07 1.33 7.63 -51.93 -0.40 0.93 16 48 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.09 2.45 6.19 -51.93 -0.32 2.13 16 50 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 LS Contribution 396.93 15.07 5.98 5.98 Total: -1.00 -31.72 396.93 -12.00 -43.72 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -8.06 Total: 4.03 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -4.41 Total: -8.80 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.59 Total: -51.08 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.10 Total: -10.48 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.72 -12.00 -43.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048867822.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.444 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds