Wall clock time and date at job start Sat Apr 11 2020 06:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00211 * 2 1 4 4 H 1.48500 * 109.46972 * 269.99600 * 3 2 1 5 5 H 1.48501 * 109.46880 * 29.99454 * 3 2 1 6 6 H 1.48494 * 109.47214 * 149.99325 * 3 2 1 7 7 C 1.38807 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00366 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00021 * 0.02562 * 7 2 1 10 10 C 1.46660 * 125.34002 * 179.97438 * 9 7 2 11 11 C 1.53665 * 107.97553 * 179.32610 * 10 9 7 12 12 H 1.08999 * 112.77778 * 219.38694 * 11 10 9 13 13 C 1.53981 * 109.29863 * 93.06656 * 11 10 9 14 14 N 1.46759 * 106.68209 * 221.16799 * 13 11 10 15 15 C 1.34777 * 125.33957 * 198.42874 * 14 13 11 16 16 O 1.21274 * 120.00275 * 175.27340 * 15 14 13 17 17 C 1.50701 * 119.99649 * 355.27330 * 15 14 13 18 18 C 1.52999 * 115.55122 * 280.23728 * 17 15 14 19 19 C 1.50697 * 109.47016 * 294.69124 * 18 17 15 20 20 C 1.38235 * 120.00478 * 266.95220 * 19 18 17 21 21 C 1.38233 * 120.00547 * 179.78583 * 20 19 18 22 22 C 1.38240 * 119.99829 * 0.44432 * 21 20 19 23 23 C 1.38236 * 119.99657 * 359.81103 * 22 21 20 24 24 C 1.38229 * 120.00252 * 359.97438 * 23 22 21 25 25 C 1.52998 * 117.49742 * 134.52745 * 17 15 14 26 26 C 1.52995 * 60.00138 * 252.51124 * 25 17 15 27 27 C 1.46664 * 109.32551 * 18.44623 * 14 13 11 28 28 C 1.53668 * 107.98404 * 359.28659 * 27 14 13 29 29 H 1.09000 * 112.77343 * 220.11707 * 28 27 14 30 30 C 1.46765 * 125.33287 * 0.03943 * 9 7 2 31 31 H 0.97000 * 119.99629 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.76506 * 59.69328 * 10 9 7 33 33 H 1.09007 * 109.76591 * 298.96018 * 10 9 7 34 34 H 1.08997 * 110.01695 * 101.85818 * 13 11 10 35 35 H 1.09006 * 110.05305 * 340.49200 * 13 11 10 36 36 H 1.08999 * 109.47244 * 54.69088 * 18 17 15 37 37 H 1.08993 * 109.47033 * 174.69342 * 18 17 15 38 38 H 1.08004 * 119.99574 * 0.02562 * 20 19 18 39 39 H 1.07994 * 120.00126 * 180.27476 * 21 20 19 40 40 H 1.07992 * 119.99920 * 179.83090 * 22 21 20 41 41 H 1.08002 * 119.99861 * 180.02562 * 23 22 21 42 42 H 1.08004 * 120.00209 * 180.02562 * 24 23 22 43 43 H 1.09003 * 117.50192 * 359.97438 * 25 17 15 44 44 H 1.09003 * 117.49792 * 145.02156 * 25 17 15 45 45 H 1.09005 * 117.49757 * 252.51347 * 26 25 17 46 46 H 1.08995 * 117.50380 * 107.49123 * 26 25 17 47 47 H 1.08997 * 109.76443 * 118.92516 * 27 14 13 48 48 H 1.09003 * 109.76561 * 239.64913 * 27 14 13 49 49 H 1.09002 * 110.01643 * 317.71469 * 30 9 7 50 50 H 1.08997 * 110.01793 * 79.10994 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.9376 -3.7208 0.0005 11 6 0.8072 -4.7616 0.0177 12 1 1.0297 -5.6158 0.6573 13 6 0.4700 -5.1706 -1.4280 14 7 -0.9923 -5.2640 -1.5092 15 6 -1.6798 -5.9180 -2.4664 16 8 -2.8871 -6.0059 -2.3931 17 6 -0.9481 -6.5401 -3.6277 18 6 -0.5411 -5.5762 -4.7440 19 6 -1.7770 -5.0229 -5.4053 20 6 -2.2966 -5.6416 -6.5270 21 6 -3.4328 -5.1367 -7.1311 22 6 -4.0444 -4.0077 -6.6188 23 6 -3.5218 -3.3860 -5.5002 24 6 -2.3881 -3.8934 -4.8936 25 6 -1.3421 -7.9625 -4.0307 26 6 -0.0080 -7.7089 -3.3260 27 6 -1.5885 -4.5337 -0.3856 28 6 -0.4460 -3.9589 0.4662 29 1 -0.6390 -4.0332 1.5364 30 6 -0.1357 -2.5245 -0.0008 31 1 -0.4849 0.8401 -0.0004 32 1 2.5618 -3.8398 0.8861 33 1 2.5428 -3.8486 -0.8970 34 1 0.9189 -6.1372 -1.6566 35 1 0.8350 -4.4159 -2.1247 36 1 0.0427 -4.7578 -4.3225 37 1 0.0590 -6.1079 -5.4823 38 1 -1.8169 -6.5217 -6.9292 39 1 -3.8412 -5.6227 -8.0048 40 1 -4.9305 -3.6117 -7.0923 41 1 -3.9998 -2.5042 -5.0997 42 1 -1.9801 -3.4079 -4.0194 43 1 -2.1303 -8.4485 -3.4556 44 1 -1.3116 -8.2117 -5.0914 45 1 0.9003 -7.7913 -3.9231 46 1 0.0814 -8.0279 -2.2876 47 1 -2.2116 -3.7227 -0.7623 48 1 -2.1918 -5.2128 0.2168 49 1 -0.5783 -1.8043 0.6874 50 1 -0.5242 -2.3671 -1.0070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048867822.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:22 Heat of formation + Delta-G solvation = 30.080781 kcal Electronic energy + Delta-G solvation = -30634.442552 eV Core-core repulsion = 26820.093614 eV Total energy + Delta-G solvation = -3814.348938 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.82373 -40.45100 -39.60067 -37.69435 -36.60482 -34.09042 -33.26349 -31.92913 -31.77221 -31.15645 -28.34222 -27.49538 -27.04025 -25.33861 -23.61681 -23.29380 -23.12676 -22.21022 -21.84259 -20.76467 -19.81473 -18.82023 -18.01898 -17.61428 -17.27855 -16.69668 -16.64392 -16.11865 -16.02409 -15.87424 -15.50649 -15.37211 -14.89734 -14.64087 -14.34132 -14.23549 -14.11402 -13.82743 -13.62118 -13.45553 -13.43899 -13.24026 -13.04173 -13.02702 -12.74219 -12.67162 -12.37556 -12.26853 -11.99555 -11.93368 -11.90964 -11.84822 -11.57136 -11.51829 -11.28081 -10.99859 -10.75204 -10.65948 -9.83132 -9.69367 -9.58656 -8.88203 -7.80445 -5.21665 0.43212 0.48824 1.45668 1.46922 1.55613 1.55818 1.95569 2.49112 2.69229 2.90192 3.28920 3.32329 3.49986 3.61103 3.70377 3.80921 3.86038 3.94405 3.96601 4.03132 4.12456 4.19170 4.24601 4.27220 4.31241 4.48774 4.51747 4.55944 4.61168 4.69175 4.76483 4.78133 4.79941 4.83657 4.88155 4.91108 4.99420 5.01696 5.10515 5.12759 5.17566 5.23924 5.27707 5.39890 5.47795 5.55091 5.60027 5.61006 5.69712 5.79291 6.12693 6.26527 6.52861 7.10668 7.13087 7.80343 8.41358 9.23849 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.003669 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.035314 B = 7630.087708 C = 8971.040728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.976 3.024 4 H -0.290 1.290 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.237 4.237 8 H 0.086 0.914 9 N -0.623 5.623 10 C 0.140 3.860 11 C -0.094 4.094 12 H 0.131 0.869 13 C 0.118 3.882 14 N -0.606 5.606 15 C 0.559 3.441 16 O -0.582 6.582 17 C -0.164 4.164 18 C -0.032 4.032 19 C -0.087 4.087 20 C -0.113 4.113 21 C -0.122 4.122 22 C -0.131 4.131 23 C -0.138 4.138 24 C -0.132 4.132 25 C -0.137 4.137 26 C -0.138 4.138 27 C 0.125 3.875 28 C -0.111 4.111 29 H 0.108 0.892 30 C 0.185 3.815 31 H 0.244 0.756 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.110 0.890 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.120 0.880 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.141 0.859 41 H 0.114 0.886 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.128 0.872 45 H 0.137 0.863 46 H 0.102 0.898 47 H 0.036 0.964 48 H 0.072 0.928 49 H 0.052 0.948 50 H -0.022 1.022 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.128 -18.737 -11.263 21.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.259 4.259 3 Si 0.805 3.195 4 H -0.217 1.217 5 H -0.224 1.224 6 H -0.189 1.189 7 C -0.365 4.365 8 H 0.104 0.896 9 N -0.349 5.349 10 C 0.015 3.985 11 C -0.113 4.113 12 H 0.149 0.851 13 C -0.004 4.004 14 N -0.338 5.338 15 C 0.349 3.651 16 O -0.462 6.462 17 C -0.167 4.167 18 C -0.069 4.069 19 C -0.087 4.087 20 C -0.131 4.131 21 C -0.139 4.139 22 C -0.149 4.149 23 C -0.156 4.156 24 C -0.151 4.151 25 C -0.175 4.175 26 C -0.175 4.175 27 C 0.002 3.998 28 C -0.130 4.130 29 H 0.126 0.874 30 C 0.060 3.940 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.128 0.872 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.138 0.862 38 H 0.171 0.829 39 H 0.171 0.829 40 H 0.159 0.841 41 H 0.133 0.867 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.146 0.854 45 H 0.155 0.845 46 H 0.120 0.880 47 H 0.055 0.945 48 H 0.090 0.910 49 H 0.070 0.930 50 H -0.004 1.004 Dipole moment (debyes) X Y Z Total from point charges -0.810 -18.608 -11.269 21.769 hybrid contribution -0.238 2.114 0.480 2.181 sum -1.048 -16.494 -10.789 19.737 Atomic orbital electron populations 1.70146 1.06357 1.24886 1.58717 1.25615 0.96480 1.01024 1.02801 0.85106 0.77842 0.79286 0.77302 1.21689 1.22352 1.18913 1.19470 0.91155 0.83614 1.42310 0.89598 1.44544 1.02203 1.01331 1.86836 1.21294 0.94404 0.83895 0.98915 1.22873 0.94215 0.98137 0.96050 0.85092 1.22186 0.79108 1.02452 0.96702 1.48317 1.08342 1.51291 1.25864 1.19817 0.86307 0.77114 0.81816 1.90647 1.16059 1.61533 1.77912 1.21209 1.07424 0.92041 0.95981 1.20082 0.94095 0.97559 0.95177 1.19962 0.97621 0.94741 0.96343 1.21336 0.96643 1.00201 0.94878 1.21523 0.95741 0.96030 1.00647 1.21408 1.00687 0.96736 0.96037 1.21280 0.96439 1.00613 0.97304 1.20998 0.97266 0.97674 0.99148 1.23079 0.98477 0.92881 1.03020 1.23357 0.95199 0.96009 1.02936 1.21562 0.95750 0.94711 0.87767 1.23026 0.94089 0.96092 0.99837 0.87428 1.21115 0.84350 0.92289 0.96272 0.94650 0.94587 0.94714 0.87214 0.93235 0.91971 0.86192 0.82907 0.82944 0.84129 0.86744 0.90102 0.89818 0.85402 0.84527 0.88007 0.94511 0.90961 0.92975 1.00418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.67 10.16 21.65 0.22 -57.45 16 2 C -0.07 -3.78 5.48 84.86 0.47 -3.32 16 3 Si 0.98 45.74 29.55 68.60 2.03 47.77 16 4 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.24 -12.99 10.25 84.03 0.86 -12.13 16 8 H 0.09 4.46 7.83 -2.91 -0.02 4.43 16 9 N -0.62 -30.99 3.38 -697.66 -2.36 -33.35 16 10 C 0.14 5.17 6.58 86.57 0.57 5.74 16 11 C -0.09 -2.76 4.10 -9.40 -0.04 -2.80 16 12 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 13 C 0.12 3.27 5.75 86.66 0.50 3.77 16 14 N -0.61 -19.61 3.31 -817.53 -2.71 -22.31 16 15 C 0.56 18.32 6.20 87.66 0.54 18.86 16 16 O -0.58 -23.84 17.31 -3.01 -0.05 -23.90 16 17 C -0.16 -3.75 1.21 -52.93 -0.06 -3.81 16 18 C -0.03 -0.71 5.23 29.85 0.16 -0.56 16 19 C -0.09 -2.32 4.96 -19.87 -0.10 -2.42 16 20 C -0.11 -2.38 9.69 22.27 0.22 -2.16 16 21 C -0.12 -2.49 10.05 22.27 0.22 -2.27 16 22 C -0.13 -3.15 10.05 22.27 0.22 -2.93 16 23 C -0.14 -4.22 10.05 22.27 0.22 -3.99 16 24 C -0.13 -4.44 9.14 22.27 0.20 -4.24 16 25 C -0.14 -2.42 9.87 30.59 0.30 -2.11 16 26 C -0.14 -2.02 8.41 30.59 0.26 -1.76 16 27 C 0.13 4.48 6.19 86.57 0.54 5.02 16 28 C -0.11 -3.99 4.10 -9.39 -0.04 -4.03 16 29 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 30 C 0.19 9.10 4.87 86.67 0.42 9.52 16 31 H 0.24 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.03 1.23 7.63 -2.38 -0.02 1.22 16 34 H 0.11 2.19 6.14 -2.39 -0.01 2.17 16 35 H 0.05 1.63 7.42 -2.38 -0.02 1.61 16 36 H 0.06 1.63 7.96 -2.39 -0.02 1.61 16 37 H 0.12 1.74 8.01 -2.39 -0.02 1.72 16 38 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 39 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 41 H 0.11 3.39 8.06 -2.91 -0.02 3.37 16 42 H 0.08 3.20 8.06 -2.91 -0.02 3.17 16 43 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.14 1.20 8.14 -2.38 -0.02 1.18 16 46 H 0.10 1.48 7.76 -2.39 -0.02 1.46 16 47 H 0.04 1.54 7.63 -2.39 -0.02 1.52 16 48 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 49 H 0.05 2.98 6.19 -2.39 -0.01 2.96 16 50 H -0.02 -1.24 7.57 -2.39 -0.02 -1.26 16 Total: -1.00 -76.50 396.93 3.51 -72.99 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.92 Total: 21.87 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 5.46 Total: -5.62 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -4.85 Total: -113.11 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.05 Total: -23.90 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -76.50 3.51 -72.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048867822.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.075 kcal (2) G-P(sol) polarization free energy of solvation -76.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds