Wall clock time and date at job start Sat Apr 11 2020 06:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00104 * 2 1 4 4 H 1.48501 * 109.47266 * 239.99552 * 3 2 1 5 5 H 1.48490 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46923 * 120.00035 * 3 2 1 7 7 C 1.38815 * 119.99656 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99813 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00183 * 0.02562 * 7 2 1 10 10 C 1.46671 * 125.33915 * 179.97438 * 9 7 2 11 11 C 1.53723 * 107.94476 * 179.43453 * 10 9 7 12 12 H 1.09004 * 112.56528 * 220.27962 * 11 10 9 13 13 C 1.53693 * 109.89248 * 93.97306 * 11 10 9 14 14 N 1.46633 * 108.00799 * 232.21755 * 13 11 10 15 15 C 1.34777 * 125.33013 * 179.15895 * 14 13 11 16 16 O 1.21284 * 120.00013 * 354.78279 * 15 14 13 17 17 C 1.50704 * 120.00373 * 174.77987 * 15 14 13 18 18 H 1.08997 * 109.24621 * 336.29397 * 17 15 14 19 19 C 1.52735 * 109.25184 * 95.76241 * 17 15 14 20 20 C 1.53332 * 108.37130 * 171.35929 * 19 17 15 21 21 C 1.52743 * 108.37613 * 290.08087 * 20 19 17 22 22 C 1.50633 * 110.58800 * 51.05300 * 21 20 19 23 23 C 1.38912 * 117.74498 * 162.53268 * 22 21 20 24 24 C 1.37937 * 120.54397 * 179.81001 * 23 22 21 25 25 C 1.38261 * 119.77239 * 359.95192 * 24 23 22 26 26 C 1.37931 * 119.77289 * 0.10936 * 25 24 23 27 27 C 1.37656 * 122.57286 * 342.46791 * 22 21 20 28 28 C 1.46040 * 109.43572 * 359.74955 * 14 13 11 29 29 C 1.53932 * 107.07718 * 17.42838 * 28 14 13 30 30 H 1.08999 * 113.60448 * 209.71197 * 29 28 14 31 31 C 1.46780 * 125.34090 * 359.97266 * 9 7 2 32 32 H 0.97000 * 119.99934 * 359.97438 * 1 2 3 33 33 H 1.09002 * 109.77255 * 59.81579 * 10 9 7 34 34 H 1.09001 * 109.77569 * 299.06048 * 10 9 7 35 35 H 1.08998 * 109.75868 * 351.85778 * 13 11 10 36 36 H 1.08995 * 109.76074 * 112.57793 * 13 11 10 37 37 H 1.08994 * 109.68650 * 291.08273 * 19 17 15 38 38 H 1.09003 * 109.68264 * 51.60550 * 19 17 15 39 39 H 1.08999 * 109.67848 * 49.79980 * 20 19 17 40 40 H 1.08992 * 109.68228 * 170.35443 * 20 19 17 41 41 H 1.08994 * 109.25020 * 171.34215 * 21 20 19 42 42 H 1.08997 * 109.24857 * 290.76942 * 21 20 19 43 43 H 1.07998 * 119.73100 * 359.78449 * 23 22 21 44 44 H 1.08000 * 120.11203 * 179.97438 * 24 23 22 45 45 H 1.08005 * 120.11445 * 180.08455 * 25 24 23 46 46 H 1.07999 * 119.73506 * 180.02562 * 26 25 24 47 47 H 1.09004 * 109.10181 * 258.40455 * 28 14 13 48 48 H 1.08997 * 110.56738 * 137.26860 * 28 14 13 49 49 H 1.09004 * 110.02243 * 79.24479 * 31 9 7 50 50 H 1.09003 * 110.02024 * 317.83300 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.9374 -3.7210 0.0005 11 6 0.8060 -4.7616 0.0150 12 1 1.0238 -5.6073 0.6673 13 6 0.4760 -5.1952 -1.4221 14 7 -0.9686 -5.0419 -1.6214 15 6 -1.6303 -5.3088 -2.7648 16 8 -1.0154 -5.6198 -3.7629 17 6 -3.1343 -5.2211 -2.8032 18 1 -3.5277 -5.3515 -1.7951 19 6 -3.5453 -3.8478 -3.3306 20 6 -5.0603 -3.8545 -3.5670 21 6 -5.3573 -4.7587 -4.7616 22 6 -4.6961 -6.1010 -4.5873 23 6 -5.1509 -7.1527 -5.3726 24 6 -4.5841 -8.4054 -5.2631 25 6 -3.5541 -8.6168 -4.3653 26 6 -3.1019 -7.5741 -3.5838 27 6 -3.6731 -6.3123 -3.6909 28 6 -1.5783 -4.5414 -0.3924 29 6 -0.4443 -3.9583 0.4699 30 1 -0.6323 -4.0251 1.5415 31 6 -0.1359 -2.5246 0.0006 32 1 -0.4850 0.8400 0.0004 33 1 2.5600 -3.8409 0.8872 34 1 2.5441 -3.8483 -0.8961 35 1 1.0146 -4.5652 -2.1300 36 1 0.7594 -6.2377 -1.5667 37 1 -3.2915 -3.0820 -2.5977 38 1 -3.0278 -3.6447 -4.2682 39 1 -5.5682 -4.2372 -2.6817 40 1 -5.4033 -2.8419 -3.7787 41 1 -6.4349 -4.8973 -4.8483 42 1 -4.9817 -4.2884 -5.6704 43 1 -5.9552 -6.9883 -6.0744 44 1 -4.9434 -9.2183 -5.8767 45 1 -3.1053 -9.5952 -4.2760 46 1 -2.2970 -7.7398 -2.8830 47 1 -2.0570 -5.3691 0.1311 48 1 -2.3121 -3.7672 -0.6166 49 1 -0.5254 -2.3690 -1.0056 50 1 -0.5781 -1.8036 0.6881 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048892982.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:26 Heat of formation + Delta-G solvation = 11.057255 kcal Electronic energy + Delta-G solvation = -30474.664115 eV Core-core repulsion = 26659.490255 eV Total energy + Delta-G solvation = -3815.173860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.86199 -39.64615 -37.98801 -36.01135 -34.98456 -32.81196 -32.20164 -30.30682 -30.13187 -29.84327 -28.86518 -25.76394 -25.58742 -24.23256 -22.94596 -22.79654 -22.16365 -20.16267 -19.70586 -19.42990 -18.86402 -17.22172 -16.76514 -16.60619 -15.89689 -15.58604 -15.25242 -15.06689 -14.72547 -14.40227 -13.91187 -13.79992 -13.67990 -13.39632 -13.27533 -13.10398 -12.94179 -12.73429 -12.45304 -12.16510 -12.01964 -11.84924 -11.68918 -11.61562 -11.48939 -11.40930 -11.12997 -10.97744 -10.80352 -10.73126 -10.43703 -10.40792 -10.15582 -10.10914 -9.84211 -9.60783 -9.49696 -8.78775 -8.64954 -8.60271 -8.31247 -6.85947 -5.70822 -3.09238 1.30071 1.35045 2.79194 3.21044 3.39201 3.43641 3.44566 3.73205 4.42310 4.47074 4.54142 4.64987 4.82263 4.86063 4.88234 4.95249 5.02359 5.08169 5.17003 5.26235 5.28206 5.33773 5.43002 5.46553 5.49182 5.55192 5.63698 5.70866 5.74158 5.74786 5.76418 5.87755 5.92137 5.96898 6.06213 6.11573 6.17808 6.22383 6.24310 6.31137 6.43298 6.46495 6.51298 6.55019 6.58938 6.69607 6.84124 6.95860 7.47628 7.59860 7.76792 7.79603 8.29651 8.37960 9.20040 9.80549 10.43774 11.35584 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017298 B = 0.003022 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.274018 B = 9262.624602 C =10249.882421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.109 4.109 12 H 0.088 0.912 13 C 0.121 3.879 14 N -0.605 5.605 15 C 0.534 3.466 16 O -0.537 6.537 17 C -0.061 4.061 18 H 0.099 0.901 19 C -0.111 4.111 20 C -0.116 4.116 21 C -0.082 4.082 22 C -0.068 4.068 23 C -0.126 4.126 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.098 4.098 27 C -0.056 4.056 28 C 0.110 3.890 29 C -0.122 4.122 30 H 0.095 0.905 31 C 0.171 3.829 32 H 0.252 0.748 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.115 0.885 47 H 0.057 0.943 48 H 0.077 0.923 49 H 0.018 0.982 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.583 -14.572 -4.475 19.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.328 5.328 10 C 0.018 3.982 11 C -0.129 4.129 12 H 0.106 0.894 13 C -0.002 4.002 14 N -0.338 5.338 15 C 0.322 3.678 16 O -0.414 6.414 17 C -0.082 4.082 18 H 0.117 0.883 19 C -0.149 4.149 20 C -0.153 4.153 21 C -0.119 4.119 22 C -0.068 4.068 23 C -0.144 4.144 24 C -0.138 4.138 25 C -0.143 4.143 26 C -0.116 4.116 27 C -0.056 4.056 28 C -0.013 4.013 29 C -0.142 4.142 30 H 0.113 0.887 31 C 0.046 3.954 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.133 0.867 47 H 0.075 0.925 48 H 0.095 0.905 49 H 0.036 0.964 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.323 -14.524 -5.089 19.715 hybrid contribution 0.633 0.756 -0.004 0.986 sum -11.690 -13.768 -5.093 18.766 Atomic orbital electron populations 1.69845 1.04854 1.24965 1.57408 1.24775 0.95754 0.97695 1.02225 0.86161 0.78443 0.83033 0.77910 1.21215 1.21564 1.21143 1.19016 0.90508 0.82380 1.43458 0.90491 1.44229 1.01679 0.99856 1.87000 1.21138 0.93261 0.85559 0.98206 1.22743 0.97325 0.98139 0.94670 0.89357 1.21834 0.80881 1.00354 0.97109 1.48064 1.08920 1.64779 1.12082 1.20031 0.89160 0.76941 0.81649 1.90700 1.69450 1.48258 1.32993 1.20170 0.91955 0.95797 1.00273 0.88269 1.21517 0.96453 0.94265 1.02643 1.21535 0.95555 0.99950 0.98276 1.20514 0.99853 0.92212 0.99331 1.19553 0.96063 0.95642 0.95586 1.21079 1.00718 0.92828 0.99733 1.21026 0.96950 0.97035 0.98819 1.21001 0.97517 0.98864 0.96935 1.21104 0.98675 0.92482 0.99326 1.19085 0.95946 0.93628 0.96980 1.21844 0.96790 0.97750 0.84957 1.23304 0.92436 0.99511 0.98989 0.88650 1.21486 0.84824 0.89595 0.99478 0.93713 0.95688 0.95719 0.90983 0.92272 0.90140 0.90704 0.91317 0.90703 0.90703 0.90447 0.86250 0.86268 0.86248 0.86707 0.92451 0.90468 0.96361 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.23 10.16 55.49 0.56 -25.67 16 2 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.20 10.25 -15.06 -0.15 -6.36 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -15.01 3.38 -171.83 -0.58 -15.59 16 10 C 0.14 2.93 6.64 -3.57 -0.02 2.90 16 11 C -0.11 -1.80 3.98 -88.60 -0.35 -2.15 16 12 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 13 C 0.12 2.04 6.25 -3.61 -0.02 2.02 16 14 N -0.61 -9.87 3.29 -172.94 -0.57 -10.44 16 15 C 0.53 8.96 5.65 -10.98 -0.06 8.90 16 16 O -0.54 -10.89 16.18 5.55 0.09 -10.80 16 17 C -0.06 -0.82 2.08 -93.09 -0.19 -1.01 16 18 H 0.10 1.16 7.13 -51.93 -0.37 0.79 16 19 C -0.11 -1.42 5.24 -26.70 -0.14 -1.56 16 20 C -0.12 -1.14 5.98 -26.69 -0.16 -1.30 16 21 C -0.08 -0.80 5.67 -28.05 -0.16 -0.96 16 22 C -0.07 -0.81 5.74 -104.62 -0.60 -1.41 16 23 C -0.13 -1.34 9.61 -39.44 -0.38 -1.72 16 24 C -0.12 -1.26 10.05 -39.68 -0.40 -1.66 16 25 C -0.13 -1.45 10.05 -39.69 -0.40 -1.85 16 26 C -0.10 -1.31 8.53 -39.44 -0.34 -1.65 16 27 C -0.06 -0.75 5.11 -104.61 -0.53 -1.29 16 28 C 0.11 1.60 5.10 -3.80 -0.02 1.58 16 29 C -0.12 -2.08 4.17 -88.34 -0.37 -2.45 16 30 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 31 C 0.17 3.92 4.94 -3.38 -0.02 3.90 16 32 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.51 7.47 -51.93 -0.39 0.12 16 35 H 0.07 1.43 7.34 -51.93 -0.38 1.05 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.06 7.82 -51.93 -0.41 0.65 16 38 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 39 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.59 8.13 -51.93 -0.42 0.16 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.12 0.99 8.05 -52.49 -0.42 0.56 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 45 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 46 H 0.11 1.58 7.25 -52.49 -0.38 1.20 16 47 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.08 1.10 7.37 -51.93 -0.38 0.72 16 49 H 0.02 0.47 7.71 -51.93 -0.40 0.07 16 50 H 0.09 2.40 6.19 -51.93 -0.32 2.08 16 LS Contribution 384.30 15.07 5.79 5.79 Total: -1.00 -32.28 384.30 -12.21 -44.49 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -8.07 Total: 1.73 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -4.42 Total: -6.41 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.59 Total: -51.70 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.28 -12.21 -44.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048892982.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.548 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds