Wall clock time and date at job start Sat Apr 11 2020 06:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00015 * 2 1 4 4 H 1.48497 * 109.47255 * 240.00090 * 3 2 1 5 5 H 1.48495 * 109.47029 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46767 * 119.99891 * 3 2 1 7 7 C 1.38811 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00473 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99506 * 0.02562 * 7 2 1 10 10 C 1.46676 * 125.33613 * 179.97438 * 9 7 2 11 11 C 1.53719 * 107.94349 * 179.49230 * 10 9 7 12 12 H 1.09002 * 112.56258 * 220.28369 * 11 10 9 13 13 C 1.53695 * 109.34128 * 93.74930 * 11 10 9 14 14 N 1.46747 * 108.02062 * 232.45420 * 13 11 10 15 15 C 1.34780 * 125.38406 * 179.13073 * 14 13 11 16 16 O 1.21273 * 120.00112 * 174.69276 * 15 14 13 17 17 C 1.50705 * 119.99751 * 354.68575 * 15 14 13 18 18 H 1.09001 * 109.25290 * 21.72647 * 17 15 14 19 19 C 1.52728 * 109.25524 * 262.25169 * 17 15 14 20 20 C 1.53329 * 108.37563 * 188.64294 * 19 17 15 21 21 C 1.52736 * 108.37216 * 69.92133 * 20 19 17 22 22 C 1.50627 * 110.59294 * 308.94511 * 21 20 19 23 23 C 1.38911 * 117.75213 * 197.47000 * 22 21 20 24 24 C 1.37930 * 120.54700 * 180.24079 * 23 22 21 25 25 C 1.38261 * 119.77356 * 359.97438 * 24 23 22 26 26 C 1.37932 * 119.77050 * 359.89889 * 25 24 23 27 27 C 1.37609 * 122.55337 * 17.56812 * 22 21 20 28 28 C 1.46739 * 109.28675 * 359.14466 * 14 13 11 29 29 C 1.53938 * 106.75883 * 18.36529 * 28 14 13 30 30 H 1.09000 * 113.00806 * 209.14239 * 29 28 14 31 31 C 1.48059 * 125.02344 * 359.42990 * 9 7 2 32 32 H 0.96996 * 119.99772 * 0.02562 * 1 2 3 33 33 H 1.08995 * 109.76737 * 59.86993 * 10 9 7 34 34 H 1.09004 * 109.77132 * 299.11621 * 10 9 7 35 35 H 1.08997 * 109.76066 * 352.08275 * 13 11 10 36 36 H 1.09000 * 109.76273 * 112.79596 * 13 11 10 37 37 H 1.09003 * 109.68902 * 308.36631 * 19 17 15 38 38 H 1.09002 * 109.68278 * 68.88345 * 19 17 15 39 39 H 1.08993 * 109.68872 * 189.64956 * 20 19 17 40 40 H 1.09005 * 109.67999 * 310.17068 * 20 19 17 41 41 H 1.09002 * 109.25356 * 69.23741 * 21 20 19 42 42 H 1.09006 * 109.25273 * 188.69581 * 21 20 19 43 43 H 1.08000 * 119.72748 * 0.21869 * 23 22 21 44 44 H 1.08003 * 120.11657 * 180.02562 * 24 23 22 45 45 H 1.08007 * 120.12032 * 179.97438 * 25 24 23 46 46 H 1.07995 * 119.72926 * 180.02562 * 26 25 24 47 47 H 1.08997 * 110.01365 * 259.02494 * 28 14 13 48 48 H 1.09003 * 110.00774 * 137.69381 * 28 14 13 49 49 H 1.09002 * 109.92110 * 79.22389 * 31 9 7 50 50 H 1.09002 * 110.75869 * 317.40132 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.9376 -3.7210 0.0005 11 6 0.8062 -4.7616 0.0135 12 1 1.0234 -5.6075 0.6657 13 6 0.4841 -5.1813 -1.4295 14 7 -0.9598 -5.0215 -1.6372 15 6 -1.6157 -5.2752 -2.7870 16 8 -2.8256 -5.2017 -2.8239 17 6 -0.8454 -5.6503 -4.0269 18 1 0.1323 -6.0371 -3.7394 19 6 -0.6599 -4.4102 -4.8989 20 6 -0.0710 -4.8495 -6.2448 21 6 -1.1434 -5.6221 -7.0102 22 6 -1.7334 -6.7060 -6.1467 23 6 -2.4372 -7.7242 -6.7773 24 6 -3.0057 -8.7432 -6.0418 25 6 -2.8743 -8.7525 -4.6655 26 6 -2.1737 -7.7438 -4.0376 27 6 -1.6003 -6.7163 -4.7771 28 6 -1.5778 -4.5413 -0.3960 29 6 -0.4445 -3.9585 0.4676 30 1 -0.6408 -4.0360 1.5370 31 6 -0.1493 -2.5176 0.0121 32 1 -0.4849 0.8400 -0.0004 33 1 2.5593 -3.8412 0.8877 34 1 2.5450 -3.8478 -0.8956 35 1 1.0291 -4.5467 -2.1283 36 1 0.7653 -6.2233 -1.5818 37 1 -1.6236 -3.9271 -5.0600 38 1 0.0217 -3.7152 -4.4086 39 1 0.2292 -3.9724 -6.8180 40 1 0.7938 -5.4909 -6.0752 41 1 -1.9330 -4.9352 -7.3146 42 1 -0.6976 -6.0727 -7.8971 43 1 -2.5403 -7.7178 -7.8523 44 1 -3.5510 -9.5316 -6.5393 45 1 -3.3176 -9.5474 -4.0840 46 1 -2.0710 -7.7519 -2.9625 47 1 -2.0569 -5.3692 0.1267 48 1 -2.3117 -3.7672 -0.6199 49 1 -0.5443 -2.3545 -0.9907 50 1 -0.5941 -1.8073 0.7090 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048892983.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:29 Heat of formation + Delta-G solvation = 11.655154 kcal Electronic energy + Delta-G solvation = -30530.751830 eV Core-core repulsion = 26715.603897 eV Total energy + Delta-G solvation = -3815.147934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.83843 -39.61141 -37.97360 -36.00432 -34.87895 -32.79172 -32.19761 -30.42731 -30.29569 -29.51569 -28.93055 -25.79080 -25.44822 -24.31268 -22.94683 -22.79403 -22.14045 -20.17651 -19.75606 -19.30175 -18.88777 -17.21011 -16.73687 -16.59060 -16.02290 -15.52981 -15.28809 -15.01546 -14.69484 -14.40033 -13.89178 -13.76507 -13.67554 -13.40861 -13.27527 -13.12436 -12.88290 -12.74812 -12.44263 -12.15879 -11.96536 -11.91184 -11.71667 -11.57481 -11.48175 -11.43816 -11.12686 -10.96673 -10.82555 -10.72643 -10.42435 -10.41074 -10.14710 -10.11923 -9.85658 -9.59073 -9.49473 -8.78708 -8.65360 -8.60469 -8.32016 -6.86891 -5.70315 -3.09265 1.30025 1.34591 2.79818 3.21060 3.38463 3.42943 3.44538 3.72741 4.42233 4.46542 4.53421 4.64281 4.80961 4.86355 4.88199 4.95421 5.02509 5.07983 5.18010 5.20200 5.28929 5.34393 5.43119 5.48213 5.53108 5.54705 5.60811 5.68178 5.74270 5.76146 5.85772 5.87798 5.92178 5.96594 5.99260 6.11975 6.17684 6.22294 6.24065 6.29695 6.42920 6.45895 6.49240 6.55608 6.58782 6.65904 6.81997 6.95600 7.49788 7.60068 7.76663 7.81297 8.27202 8.38442 9.18068 9.79742 10.42949 11.36228 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016723 B = 0.003083 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.983027 B = 9080.878902 C = 9918.605619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.147 3.853 11 C -0.109 4.109 12 H 0.090 0.910 13 C 0.111 3.889 14 N -0.606 5.606 15 C 0.535 3.465 16 O -0.537 6.537 17 C -0.062 4.062 18 H 0.098 0.902 19 C -0.109 4.109 20 C -0.116 4.116 21 C -0.082 4.082 22 C -0.069 4.069 23 C -0.125 4.125 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.099 4.099 27 C -0.056 4.056 28 C 0.119 3.881 29 C -0.123 4.123 30 H 0.093 0.907 31 C 0.175 3.825 32 H 0.253 0.747 33 H 0.024 0.976 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.115 0.885 47 H 0.056 0.944 48 H 0.077 0.923 49 H 0.022 0.978 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.672 -16.846 -10.286 19.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.021 3.979 11 C -0.128 4.128 12 H 0.108 0.892 13 C -0.012 4.012 14 N -0.339 5.339 15 C 0.323 3.677 16 O -0.414 6.414 17 C -0.083 4.083 18 H 0.116 0.884 19 C -0.147 4.147 20 C -0.153 4.153 21 C -0.119 4.119 22 C -0.069 4.069 23 C -0.143 4.143 24 C -0.138 4.138 25 C -0.143 4.143 26 C -0.117 4.117 27 C -0.056 4.056 28 C -0.003 4.003 29 C -0.143 4.143 30 H 0.111 0.889 31 C 0.050 3.950 32 H 0.064 0.936 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.133 0.867 47 H 0.075 0.925 48 H 0.095 0.905 49 H 0.040 0.960 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.408 -16.583 -10.384 19.713 hybrid contribution 0.469 0.794 0.133 0.931 sum -1.940 -15.789 -10.251 18.924 Atomic orbital electron populations 1.69873 1.04860 1.25054 1.57097 1.24788 0.95705 0.97700 1.02209 0.86183 0.78430 0.83163 0.77877 1.21212 1.21591 1.21165 1.19001 0.90428 0.82443 1.43749 0.90539 1.44557 1.01601 0.99757 1.87166 1.21112 0.93085 0.85579 0.98134 1.22720 0.97435 0.98284 0.94367 0.89183 1.22034 0.81068 1.00084 0.98014 1.48257 1.08937 1.65431 1.11325 1.19993 0.87624 0.77086 0.82967 1.90695 1.13824 1.52460 1.84453 1.20180 0.98954 0.95985 0.93142 0.88395 1.21489 1.02726 0.95428 0.95079 1.21532 0.97868 1.00202 0.95719 1.20513 0.98343 0.95755 0.97276 1.19541 0.98209 0.96293 0.92816 1.21078 0.98877 0.94712 0.99643 1.21025 1.00006 0.98645 0.94172 1.21002 0.99671 0.98825 0.94776 1.21120 0.97197 0.93882 0.99532 1.19104 0.98770 0.95023 0.92735 1.21834 0.96295 0.98143 0.84077 1.23326 0.92539 0.99445 0.99031 0.88868 1.21675 0.84341 0.89256 0.99713 0.93645 0.95846 0.95762 0.90788 0.92123 0.90676 0.90250 0.90732 0.91351 0.90428 0.90706 0.86244 0.86258 0.86236 0.86703 0.92550 0.90508 0.95969 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.52 10.15 55.49 0.56 -25.95 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.16 10.25 -15.06 -0.15 -6.32 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -14.75 3.41 -170.79 -0.58 -15.34 16 10 C 0.15 2.82 6.63 -3.57 -0.02 2.80 16 11 C -0.11 -1.70 4.02 -88.60 -0.36 -2.06 16 12 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 13 C 0.11 1.61 5.28 -3.55 -0.02 1.59 16 14 N -0.61 -9.89 3.31 -172.29 -0.57 -10.46 16 15 C 0.54 9.00 5.60 -10.98 -0.06 8.94 16 16 O -0.54 -10.82 16.31 5.56 0.09 -10.73 16 17 C -0.06 -0.84 2.33 -93.09 -0.22 -1.06 16 18 H 0.10 1.19 6.85 -51.93 -0.36 0.83 16 19 C -0.11 -1.44 5.24 -26.70 -0.14 -1.58 16 20 C -0.12 -1.18 5.98 -26.70 -0.16 -1.34 16 21 C -0.08 -0.81 5.67 -28.05 -0.16 -0.97 16 22 C -0.07 -0.82 5.74 -104.64 -0.60 -1.42 16 23 C -0.13 -1.34 9.61 -39.45 -0.38 -1.72 16 24 C -0.12 -1.27 10.05 -39.69 -0.40 -1.66 16 25 C -0.12 -1.44 10.05 -39.68 -0.40 -1.84 16 26 C -0.10 -1.33 8.59 -39.42 -0.34 -1.67 16 27 C -0.06 -0.76 5.12 -104.61 -0.54 -1.29 16 28 C 0.12 2.01 6.00 -3.42 -0.02 1.99 16 29 C -0.12 -2.18 4.11 -88.34 -0.36 -2.55 16 30 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 31 C 0.17 4.07 4.97 -2.68 -0.01 4.06 16 32 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.02 0.46 7.44 -51.93 -0.39 0.07 16 35 H 0.07 1.15 7.29 -51.93 -0.38 0.77 16 36 H 0.06 0.72 7.99 -51.93 -0.41 0.30 16 37 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.60 8.13 -51.93 -0.42 0.17 16 43 H 0.12 0.99 8.05 -52.49 -0.42 0.57 16 44 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 45 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 46 H 0.11 1.57 7.27 -52.49 -0.38 1.19 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.08 1.45 7.92 -51.93 -0.41 1.04 16 49 H 0.02 0.58 7.70 -51.93 -0.40 0.18 16 50 H 0.09 2.41 6.28 -51.93 -0.33 2.08 16 LS Contribution 385.10 15.07 5.80 5.80 Total: -1.00 -31.99 385.10 -12.24 -44.23 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -8.09 Total: 2.11 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -4.43 Total: -6.41 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.59 Total: -51.75 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.99 -12.24 -44.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048892983.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.886 kcal (2) G-P(sol) polarization free energy of solvation -31.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds