Wall clock time and date at job start Sat Apr 11 2020 06:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00015 * 2 1 4 4 H 1.48497 * 109.47255 * 240.00090 * 3 2 1 5 5 H 1.48495 * 109.47029 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46767 * 119.99891 * 3 2 1 7 7 C 1.38811 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00473 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99506 * 0.02562 * 7 2 1 10 10 C 1.46676 * 125.33613 * 179.97438 * 9 7 2 11 11 C 1.53719 * 107.94349 * 179.49230 * 10 9 7 12 12 H 1.09002 * 112.56258 * 220.28369 * 11 10 9 13 13 C 1.53695 * 109.34128 * 93.74930 * 11 10 9 14 14 N 1.46747 * 108.02062 * 232.45420 * 13 11 10 15 15 C 1.34780 * 125.38406 * 179.13073 * 14 13 11 16 16 O 1.21273 * 120.00112 * 174.69276 * 15 14 13 17 17 C 1.50705 * 119.99751 * 354.68575 * 15 14 13 18 18 H 1.09001 * 109.25290 * 21.72647 * 17 15 14 19 19 C 1.52728 * 109.25524 * 262.25169 * 17 15 14 20 20 C 1.53329 * 108.37563 * 188.64294 * 19 17 15 21 21 C 1.52736 * 108.37216 * 69.92133 * 20 19 17 22 22 C 1.50627 * 110.59294 * 308.94511 * 21 20 19 23 23 C 1.38911 * 117.75213 * 197.47000 * 22 21 20 24 24 C 1.37930 * 120.54700 * 180.24079 * 23 22 21 25 25 C 1.38261 * 119.77356 * 359.97438 * 24 23 22 26 26 C 1.37932 * 119.77050 * 359.89889 * 25 24 23 27 27 C 1.37609 * 122.55337 * 17.56812 * 22 21 20 28 28 C 1.46739 * 109.28675 * 359.14466 * 14 13 11 29 29 C 1.53938 * 106.75883 * 18.36529 * 28 14 13 30 30 H 1.09000 * 113.00806 * 209.14239 * 29 28 14 31 31 C 1.48059 * 125.02344 * 359.42990 * 9 7 2 32 32 H 0.96996 * 119.99772 * 0.02562 * 1 2 3 33 33 H 1.08995 * 109.76737 * 59.86993 * 10 9 7 34 34 H 1.09004 * 109.77132 * 299.11621 * 10 9 7 35 35 H 1.08997 * 109.76066 * 352.08275 * 13 11 10 36 36 H 1.09000 * 109.76273 * 112.79596 * 13 11 10 37 37 H 1.09003 * 109.68902 * 308.36631 * 19 17 15 38 38 H 1.09002 * 109.68278 * 68.88345 * 19 17 15 39 39 H 1.08993 * 109.68872 * 189.64956 * 20 19 17 40 40 H 1.09005 * 109.67999 * 310.17068 * 20 19 17 41 41 H 1.09002 * 109.25356 * 69.23741 * 21 20 19 42 42 H 1.09006 * 109.25273 * 188.69581 * 21 20 19 43 43 H 1.08000 * 119.72748 * 0.21869 * 23 22 21 44 44 H 1.08003 * 120.11657 * 180.02562 * 24 23 22 45 45 H 1.08007 * 120.12032 * 179.97438 * 25 24 23 46 46 H 1.07995 * 119.72926 * 180.02562 * 26 25 24 47 47 H 1.08997 * 110.01365 * 259.02494 * 28 14 13 48 48 H 1.09003 * 110.00774 * 137.69381 * 28 14 13 49 49 H 1.09002 * 109.92110 * 79.22389 * 31 9 7 50 50 H 1.09002 * 110.75869 * 317.40132 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.9376 -3.7210 0.0005 11 6 0.8062 -4.7616 0.0135 12 1 1.0234 -5.6075 0.6657 13 6 0.4841 -5.1813 -1.4295 14 7 -0.9598 -5.0215 -1.6372 15 6 -1.6157 -5.2752 -2.7870 16 8 -2.8256 -5.2017 -2.8239 17 6 -0.8454 -5.6503 -4.0269 18 1 0.1323 -6.0371 -3.7394 19 6 -0.6599 -4.4102 -4.8989 20 6 -0.0710 -4.8495 -6.2448 21 6 -1.1434 -5.6221 -7.0102 22 6 -1.7334 -6.7060 -6.1467 23 6 -2.4372 -7.7242 -6.7773 24 6 -3.0057 -8.7432 -6.0418 25 6 -2.8743 -8.7525 -4.6655 26 6 -2.1737 -7.7438 -4.0376 27 6 -1.6003 -6.7163 -4.7771 28 6 -1.5778 -4.5413 -0.3960 29 6 -0.4445 -3.9585 0.4676 30 1 -0.6408 -4.0360 1.5370 31 6 -0.1493 -2.5176 0.0121 32 1 -0.4849 0.8400 -0.0004 33 1 2.5593 -3.8412 0.8877 34 1 2.5450 -3.8478 -0.8956 35 1 1.0291 -4.5467 -2.1283 36 1 0.7653 -6.2233 -1.5818 37 1 -1.6236 -3.9271 -5.0600 38 1 0.0217 -3.7152 -4.4086 39 1 0.2292 -3.9724 -6.8180 40 1 0.7938 -5.4909 -6.0752 41 1 -1.9330 -4.9352 -7.3146 42 1 -0.6976 -6.0727 -7.8971 43 1 -2.5403 -7.7178 -7.8523 44 1 -3.5510 -9.5316 -6.5393 45 1 -3.3176 -9.5474 -4.0840 46 1 -2.0710 -7.7519 -2.9625 47 1 -2.0569 -5.3692 0.1267 48 1 -2.3117 -3.7672 -0.6199 49 1 -0.5443 -2.3545 -0.9907 50 1 -0.5941 -1.8073 0.7090 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048892983.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:28 Heat of formation + Delta-G solvation = -5.291025 kcal Electronic energy + Delta-G solvation = -30531.486672 eV Core-core repulsion = 26715.603897 eV Total energy + Delta-G solvation = -3815.882775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.00365 -40.80158 -39.31769 -36.93390 -36.54949 -34.15526 -33.63567 -31.87393 -31.19775 -31.15242 -29.92538 -27.48767 -26.99447 -25.55292 -24.22063 -23.68520 -23.19964 -21.88884 -20.89673 -20.65584 -20.01728 -18.86237 -18.31296 -17.54388 -17.39531 -16.64843 -16.42455 -16.19730 -16.15795 -15.73140 -15.44545 -15.01186 -14.82657 -14.69105 -14.39879 -14.32439 -14.14538 -13.81573 -13.66108 -13.49629 -13.29607 -13.28400 -13.12685 -13.04487 -12.79842 -12.66131 -12.60077 -12.33931 -12.04590 -12.01932 -11.88312 -11.83083 -11.68445 -11.55364 -11.31636 -11.26244 -10.83891 -10.69127 -9.67342 -9.65320 -9.47763 -8.87105 -7.79555 -5.20020 0.41836 0.47940 1.45793 1.48496 1.49230 1.54955 1.97044 2.49912 2.83764 3.27010 3.32806 3.48650 3.52126 3.63926 3.73694 3.88273 3.91961 3.99684 4.02847 4.11104 4.19505 4.22591 4.28157 4.32739 4.34399 4.51964 4.53244 4.56799 4.59947 4.71039 4.72037 4.82282 4.83599 4.87793 4.93906 4.95865 4.99945 5.08701 5.09308 5.11672 5.23773 5.26089 5.33864 5.41356 5.48496 5.58738 5.61451 5.63236 5.70608 5.81423 6.11925 6.25327 6.47253 7.06689 7.10331 7.80080 8.42284 9.24988 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016723 B = 0.003083 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.983027 B = 9080.878902 C = 9918.605619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.977 3.023 4 H -0.278 1.278 5 H -0.299 1.299 6 H -0.275 1.275 7 C -0.236 4.236 8 H 0.084 0.916 9 N -0.626 5.626 10 C 0.140 3.860 11 C -0.091 4.091 12 H 0.135 0.865 13 C 0.111 3.889 14 N -0.610 5.610 15 C 0.531 3.469 16 O -0.579 6.579 17 C -0.053 4.053 18 H 0.115 0.885 19 C -0.108 4.108 20 C -0.109 4.109 21 C -0.080 4.080 22 C -0.081 4.081 23 C -0.127 4.127 24 C -0.120 4.120 25 C -0.134 4.134 26 C -0.120 4.120 27 C -0.079 4.079 28 C 0.123 3.877 29 C -0.113 4.113 30 H 0.111 0.889 31 C 0.187 3.813 32 H 0.244 0.756 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.061 0.939 36 H 0.102 0.898 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.147 0.853 44 H 0.148 0.852 45 H 0.137 0.863 46 H 0.103 0.897 47 H 0.082 0.918 48 H 0.044 0.956 49 H -0.019 1.019 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.057 -19.579 -11.488 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.805 3.195 4 H -0.204 1.204 5 H -0.225 1.225 6 H -0.201 1.201 7 C -0.366 4.366 8 H 0.102 0.898 9 N -0.352 5.352 10 C 0.015 3.985 11 C -0.110 4.110 12 H 0.153 0.847 13 C -0.011 4.011 14 N -0.342 5.342 15 C 0.321 3.679 16 O -0.459 6.459 17 C -0.074 4.074 18 H 0.133 0.867 19 C -0.147 4.147 20 C -0.146 4.146 21 C -0.117 4.117 22 C -0.081 4.081 23 C -0.145 4.145 24 C -0.138 4.138 25 C -0.151 4.151 26 C -0.139 4.139 27 C -0.080 4.080 28 C 0.000 4.000 29 C -0.133 4.133 30 H 0.129 0.871 31 C 0.062 3.938 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.120 0.880 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.120 0.880 43 H 0.165 0.835 44 H 0.166 0.834 45 H 0.154 0.846 46 H 0.121 0.879 47 H 0.100 0.900 48 H 0.062 0.938 49 H -0.001 1.001 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.739 -19.351 -11.577 22.562 hybrid contribution -0.047 1.635 0.505 1.712 sum -0.785 -17.717 -11.072 20.907 Atomic orbital electron populations 1.70155 1.06313 1.24926 1.58706 1.25620 0.96500 1.01029 1.02930 0.85176 0.77087 0.78947 0.78284 1.20382 1.22516 1.20079 1.19424 0.91069 0.83750 1.42312 0.89784 1.44869 1.02171 1.01223 1.86961 1.21362 0.94383 0.83979 0.98793 1.22786 0.94374 0.98243 0.95635 0.84677 1.22158 0.79630 1.02262 0.97081 1.48378 1.09810 1.64891 1.11105 1.20627 0.87388 0.76164 0.83763 1.90658 1.15763 1.54409 1.85104 1.20161 0.99273 0.96333 0.91613 0.86699 1.21462 1.01251 0.94963 0.96981 1.21526 0.98246 1.01015 0.93837 1.20564 0.98162 0.95243 0.97731 1.19853 0.98464 0.97277 0.92465 1.21451 0.97890 0.94029 1.01141 1.21414 0.99416 0.99196 0.93778 1.21285 0.99312 0.98799 0.95750 1.21176 0.98554 0.94957 0.99165 1.19202 0.99975 0.95117 0.93659 1.21735 0.95532 0.98088 0.84640 1.23141 0.94221 0.95925 1.00014 0.87068 1.21280 0.83960 0.92186 0.96416 0.94687 0.94773 0.94821 0.92097 0.87973 0.93153 0.91768 0.89480 0.90112 0.90574 0.87950 0.83498 0.83380 0.84550 0.87887 0.89960 0.93763 1.00130 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.62 10.15 21.65 0.22 -57.40 16 2 C -0.07 -3.87 5.48 84.86 0.47 -3.41 16 3 Si 0.98 45.68 29.55 68.60 2.03 47.71 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.24 -12.96 10.25 84.03 0.86 -12.10 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.63 -30.97 3.41 -694.26 -2.37 -33.34 16 10 C 0.14 5.12 6.63 86.59 0.57 5.69 16 11 C -0.09 -2.61 4.02 -9.49 -0.04 -2.65 16 12 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 13 C 0.11 3.00 5.28 86.57 0.46 3.46 16 14 N -0.61 -19.88 3.31 -817.40 -2.71 -22.59 16 15 C 0.53 18.34 5.60 87.66 0.49 18.83 16 16 O -0.58 -24.48 16.31 -3.01 -0.05 -24.53 16 17 C -0.05 -1.45 2.33 -12.40 -0.03 -1.48 16 18 H 0.12 2.65 6.85 -2.39 -0.02 2.63 16 19 C -0.11 -2.92 5.24 30.61 0.16 -2.76 16 20 C -0.11 -2.07 5.98 30.62 0.18 -1.88 16 21 C -0.08 -1.42 5.67 29.74 0.17 -1.25 16 22 C -0.08 -1.80 5.74 -19.87 -0.11 -1.92 16 23 C -0.13 -2.38 9.61 22.36 0.21 -2.17 16 24 C -0.12 -2.21 10.05 22.20 0.22 -1.99 16 25 C -0.13 -2.90 10.05 22.20 0.22 -2.68 16 26 C -0.12 -3.19 8.59 22.37 0.19 -2.99 16 27 C -0.08 -2.10 5.12 -19.86 -0.10 -2.20 16 28 C 0.12 4.21 6.00 86.65 0.52 4.73 16 29 C -0.11 -3.96 4.11 -9.32 -0.04 -4.00 16 30 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 31 C 0.19 9.11 4.97 86.41 0.43 9.53 16 32 H 0.24 14.55 8.31 -92.71 -0.77 13.78 16 33 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.03 1.19 7.44 -2.39 -0.02 1.17 16 35 H 0.06 1.83 7.29 -2.39 -0.02 1.81 16 36 H 0.10 2.00 7.99 -2.39 -0.02 1.98 16 37 H 0.05 1.57 8.08 -2.39 -0.02 1.55 16 38 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 1.35 8.10 -2.38 -0.02 1.33 16 41 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.10 1.27 8.13 -2.38 -0.02 1.25 16 43 H 0.15 1.87 8.05 -2.91 -0.02 1.85 16 44 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 45 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 46 H 0.10 2.85 7.27 -2.91 -0.02 2.83 16 47 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 48 H 0.04 1.79 7.92 -2.39 -0.02 1.77 16 49 H -0.02 -1.08 7.70 -2.39 -0.02 -1.10 16 50 H 0.05 2.82 6.28 -2.39 -0.01 2.81 16 Total: -1.00 -74.61 385.10 2.88 -71.73 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.92 Total: 19.65 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 4.84 Total: -1.23 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -4.85 Total: -113.32 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.05 Total: -24.53 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -74.61 2.88 -71.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048892983.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.436 kcal (2) G-P(sol) polarization free energy of solvation -74.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds